Wall clock time and date at job start Tue Mar 31 2020 16:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.08997 * 109.47030 * 305.00122 * 3 2 1 5 5 O 1.42898 * 109.47051 * 64.99959 * 3 2 1 6 6 C 1.42894 * 114.00507 * 269.99983 * 5 3 2 7 7 C 1.54266 * 110.03278 * 267.17048 * 6 5 3 8 8 C 1.54897 * 104.19543 * 217.09882 * 7 6 5 9 9 C 1.54899 * 102.74491 * 37.94078 * 8 7 6 10 10 C 1.53870 * 110.03748 * 149.99731 * 6 5 3 11 11 C 1.50700 * 109.47146 * 185.00174 * 3 2 1 12 12 O 1.21275 * 119.99745 * 245.00361 * 11 3 2 13 13 N 1.34770 * 120.00033 * 65.00054 * 11 3 2 14 14 C 1.46496 * 120.00229 * 180.02562 * 13 11 3 15 15 H 1.09002 * 110.88567 * 31.11827 * 14 13 11 16 16 C 1.54910 * 111.03806 * 267.21591 * 14 13 11 17 17 N 1.47425 * 104.83231 * 278.91717 * 16 14 13 18 18 C 1.36933 * 125.64542 * 156.13438 * 17 16 14 19 19 H 1.08001 * 120.00302 * 359.71759 * 18 17 16 20 20 C 1.38819 * 119.99866 * 179.71718 * 18 17 16 21 21 N 1.31626 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00125 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47402 * 90.00064 * 22 20 18 24 24 H 1.48498 * 109.46929 * 209.99599 * 22 20 18 25 25 H 1.48496 * 109.47115 * 329.99904 * 22 20 18 26 26 C 1.47026 * 108.70074 * 335.87083 * 17 16 14 27 27 C 1.54316 * 107.27365 * 1.05989 * 26 17 16 28 28 H 1.09002 * 110.72355 * 263.82891 * 27 26 17 29 29 O 1.42898 * 110.72412 * 140.55668 * 27 26 17 30 30 H 1.09004 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46977 * 299.99740 * 1 2 3 32 32 H 1.09000 * 109.47397 * 59.99656 * 1 2 3 33 33 H 1.09004 * 109.46664 * 240.00194 * 2 1 3 34 34 H 1.08998 * 109.46886 * 120.00315 * 2 1 3 35 35 H 1.09003 * 110.01630 * 28.60939 * 6 5 3 36 36 H 1.09000 * 110.48661 * 335.77897 * 7 6 5 37 37 H 1.09000 * 110.48962 * 98.42363 * 7 6 5 38 38 H 1.08991 * 110.75808 * 279.63153 * 8 7 6 39 39 H 1.08997 * 110.75149 * 156.25016 * 8 7 6 40 40 H 1.08994 * 110.48535 * 203.37604 * 9 8 7 41 41 H 1.09001 * 110.48255 * 80.73554 * 9 8 7 42 42 H 1.09004 * 110.03855 * 238.57334 * 10 6 5 43 43 H 1.09007 * 110.03130 * 0.02562 * 10 6 5 44 44 H 0.97001 * 120.00436 * 0.02562 * 13 11 3 45 45 H 1.09001 * 110.36852 * 160.08016 * 16 14 13 46 46 H 1.08998 * 110.36449 * 37.75664 * 16 14 13 47 47 H 0.97000 * 119.99477 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.87531 * 120.47707 * 26 17 16 49 49 H 1.09000 * 109.87938 * 241.63960 * 26 17 16 50 50 H 0.96702 * 114.00079 * 61.45168 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 0.3928 2.7356 1.1661 7 6 0.5781 4.2167 0.7766 8 6 -0.4852 4.9664 1.6172 9 6 -0.4580 4.2013 2.9637 10 6 -0.2661 2.7258 2.5566 11 6 3.5419 1.4443 -0.1239 12 8 4.2250 1.8610 0.7875 13 7 4.1260 0.9829 -1.2474 14 6 5.5860 0.9841 -1.3676 15 1 6.0562 0.8463 -0.3939 16 6 6.0869 2.2829 -2.0472 17 7 5.8973 2.0509 -3.4907 18 6 5.7552 3.0240 -4.4435 19 1 5.7730 4.0656 -4.1585 20 6 5.5882 2.6718 -5.7758 21 7 5.5660 1.4024 -6.1231 22 14 5.3951 3.9993 -7.0757 23 1 6.7321 4.3762 -7.6008 24 1 4.5540 3.4857 -8.1865 25 1 4.7459 5.1912 -6.4733 26 6 5.8924 0.6017 -3.7385 27 6 6.0622 -0.0973 -2.3732 28 1 7.1072 -0.3531 -2.1982 29 8 5.2356 -1.2602 -2.2942 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 -0.2531 2.2368 0.4434 36 1 1.5802 4.5572 1.0375 37 1 0.3915 4.3575 -0.2880 38 1 -1.4678 4.8934 1.1512 39 1 -0.2003 6.0089 1.7594 40 1 -1.4008 4.3309 3.4951 41 1 0.3767 4.5394 3.5777 42 1 -1.2320 2.2230 2.5087 43 1 0.3826 2.2223 3.2735 44 1 3.5797 0.6499 -1.9765 45 1 7.1415 2.4453 -1.8244 46 1 5.4932 3.1361 -1.7189 47 1 5.4497 1.1563 -7.0541 48 1 4.9457 0.3063 -4.1910 49 1 6.7193 0.3354 -4.3968 50 1 5.4425 -1.9355 -2.9546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220455319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:51 Heat of formation + Delta-G solvation = -115.702703 kcal Electronic energy + Delta-G solvation = -29614.775216 eV Core-core repulsion = 25642.333330 eV Total energy + Delta-G solvation = -3972.441885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.06526 -38.95563 -37.71994 -36.12544 -35.06932 -33.80436 -32.94506 -31.57708 -29.13089 -28.76326 -28.23461 -27.24461 -26.17065 -24.36281 -22.28873 -20.91049 -20.71101 -20.44340 -20.36619 -19.67096 -17.50491 -17.16844 -16.79670 -16.60686 -15.68295 -15.58277 -15.52613 -14.84155 -14.48037 -14.15058 -14.12234 -13.82727 -13.73991 -13.48470 -13.20560 -12.73473 -12.62350 -12.42903 -12.25586 -12.14981 -11.97647 -11.88666 -11.45772 -11.33463 -11.27436 -11.26099 -11.18780 -11.05445 -10.89834 -10.77245 -10.76084 -10.46459 -10.22987 -10.10621 -9.86723 -9.64918 -9.32290 -9.14155 -8.78727 -8.48785 -6.92619 -5.80579 -3.13860 2.97091 3.10903 3.35082 3.40905 3.42108 4.02088 4.40105 4.43173 4.45007 4.58846 4.77684 4.82063 4.84140 5.02068 5.09957 5.18254 5.26168 5.31005 5.36066 5.39083 5.41649 5.49331 5.49668 5.55543 5.62051 5.65954 5.72912 5.73602 5.81458 5.85409 5.89170 5.90874 6.04173 6.09027 6.11591 6.13359 6.20808 6.25634 6.44797 6.59550 7.00257 7.22500 7.29453 7.41172 7.68308 7.97879 8.06297 8.14228 8.63911 9.12067 9.72028 10.36124 11.31248 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003512 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.552395 B = 7969.837150 C = 9085.195674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.140 4.140 3 C 0.075 3.925 4 H 0.084 0.916 5 O -0.346 6.346 6 C 0.074 3.926 7 C -0.152 4.152 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.122 4.122 11 C 0.515 3.485 12 O -0.534 6.534 13 N -0.689 5.689 14 C 0.143 3.857 15 H 0.093 0.907 16 C 0.123 3.877 17 N -0.600 5.600 18 C -0.226 4.226 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.150 3.850 27 C 0.064 3.936 28 H 0.067 0.933 29 O -0.563 6.563 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.406 0.594 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.252 0.748 48 H 0.057 0.943 49 H 0.047 0.953 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -2.499 12.703 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.178 4.178 3 C 0.014 3.986 4 H 0.102 0.898 5 O -0.264 6.264 6 C 0.016 3.984 7 C -0.190 4.190 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.410 6.410 13 N -0.341 5.341 14 C 0.036 3.964 15 H 0.111 0.889 16 C -0.004 4.004 17 N -0.328 5.328 18 C -0.354 4.354 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.572 5.572 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.025 3.975 27 C 0.004 3.996 28 H 0.085 0.915 29 O -0.367 6.367 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.241 0.759 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.504 -1.857 13.797 18.059 hybrid contribution -0.114 0.226 -2.000 2.016 sum -11.618 -1.631 11.796 16.637 Atomic orbital electron populations 1.21947 0.95301 1.02300 1.01952 1.21998 0.96664 0.95285 1.03893 1.21937 0.92876 0.94684 0.89136 0.89818 1.88093 1.35936 1.70486 1.31879 1.23087 0.85173 0.92339 0.97769 1.22963 1.00668 0.95391 0.99953 1.22423 0.98773 0.99161 0.95660 1.22333 1.01633 0.94680 0.97375 1.22207 1.00087 0.97412 0.96266 1.20224 0.89417 0.77910 0.82481 1.90673 1.64846 1.46208 1.39312 1.45444 1.07359 1.63457 1.17814 1.22164 0.80417 0.95438 0.98333 0.88888 1.22017 0.97710 0.94952 0.85744 1.44319 1.85858 1.01799 1.00817 1.19077 1.42597 0.87293 0.86437 0.90332 1.24779 1.02105 0.96453 0.97031 1.69926 1.56730 1.14172 1.16387 0.86100 0.77615 0.80582 0.81367 1.21572 1.21671 1.20695 1.21865 1.01821 0.83640 0.90216 1.23555 0.92957 0.85086 0.98000 0.91531 1.86399 1.61384 1.29566 1.59396 0.92125 0.91948 0.92534 0.90047 0.90528 0.90939 0.90125 0.91487 0.91528 0.91378 0.91643 0.91306 0.91180 0.90248 0.75907 0.95028 0.93243 0.93742 0.92505 0.93487 0.77590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.58 37.16 0.32 -1.17 16 2 C -0.14 -1.66 5.61 -26.73 -0.15 -1.81 16 3 C 0.08 1.07 2.67 -27.88 -0.07 0.99 16 4 H 0.08 1.10 7.80 -51.93 -0.40 0.70 16 5 O -0.35 -5.11 9.01 -55.09 -0.50 -5.60 16 6 C 0.07 0.84 2.08 -25.62 -0.05 0.79 16 7 C -0.15 -1.73 6.56 -25.07 -0.16 -1.89 16 8 C -0.12 -1.11 6.91 -24.73 -0.17 -1.28 16 9 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 10 C -0.12 -1.18 6.44 -25.62 -0.16 -1.35 16 11 C 0.52 9.15 7.18 -10.99 -0.08 9.08 16 12 O -0.53 -11.38 16.15 -14.30 -0.23 -11.61 16 13 N -0.69 -12.08 4.70 -51.73 -0.24 -12.33 16 14 C 0.14 2.65 3.31 -65.78 -0.22 2.43 16 15 H 0.09 1.72 7.54 -51.93 -0.39 1.33 16 16 C 0.12 2.59 6.93 -2.53 -0.02 2.58 16 17 N -0.60 -14.67 3.39 -170.07 -0.58 -15.25 16 18 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.21 5.49 -17.42 -0.10 -0.31 16 21 N -0.92 -25.84 10.31 55.49 0.57 -25.27 16 22 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.15 3.35 5.13 -3.07 -0.02 3.34 16 27 C 0.06 1.14 4.12 -24.90 -0.10 1.04 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 O -0.56 -8.83 12.67 -35.23 -0.45 -9.27 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.57 5.79 -51.93 -0.30 0.27 16 32 H 0.06 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.72 5.34 -51.93 -0.28 0.45 16 36 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 44 H 0.41 6.91 8.09 -40.82 -0.33 6.58 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 48 H 0.06 1.40 7.31 -51.93 -0.38 1.02 16 49 H 0.05 1.17 7.49 -51.93 -0.39 0.78 16 50 H 0.38 4.55 9.11 45.56 0.42 4.96 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -32.02 391.21 -9.77 -41.79 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.91 Total: 10.14 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.31 Total: 4.92 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.25 Total: -52.84 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -1.17 Total: -26.48 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.02 -9.77 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220455319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.910 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds