Wall clock time and date at job start Tue Mar 31 2020 16:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.08997 * 109.47030 * 305.00122 * 3 2 1 5 5 O 1.42898 * 109.47051 * 64.99959 * 3 2 1 6 6 C 1.42894 * 114.00507 * 269.99983 * 5 3 2 7 7 C 1.54266 * 110.03278 * 267.17048 * 6 5 3 8 8 C 1.54897 * 104.19543 * 217.09882 * 7 6 5 9 9 C 1.54899 * 102.74491 * 37.94078 * 8 7 6 10 10 C 1.53870 * 110.03748 * 149.99731 * 6 5 3 11 11 C 1.50700 * 109.47146 * 185.00174 * 3 2 1 12 12 O 1.21275 * 119.99745 * 245.00361 * 11 3 2 13 13 N 1.34770 * 120.00033 * 65.00054 * 11 3 2 14 14 C 1.46496 * 120.00229 * 180.02562 * 13 11 3 15 15 H 1.09002 * 110.88567 * 31.11827 * 14 13 11 16 16 C 1.54910 * 111.03806 * 267.21591 * 14 13 11 17 17 N 1.47425 * 104.83231 * 278.91717 * 16 14 13 18 18 C 1.36933 * 125.64542 * 156.13438 * 17 16 14 19 19 H 1.08001 * 120.00302 * 359.71759 * 18 17 16 20 20 C 1.38819 * 119.99866 * 179.71718 * 18 17 16 21 21 N 1.31626 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00125 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47402 * 90.00064 * 22 20 18 24 24 H 1.48498 * 109.46929 * 209.99599 * 22 20 18 25 25 H 1.48496 * 109.47115 * 329.99904 * 22 20 18 26 26 C 1.47026 * 108.70074 * 335.87083 * 17 16 14 27 27 C 1.54316 * 107.27365 * 1.05989 * 26 17 16 28 28 H 1.09002 * 110.72355 * 263.82891 * 27 26 17 29 29 O 1.42898 * 110.72412 * 140.55668 * 27 26 17 30 30 H 1.09004 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46977 * 299.99740 * 1 2 3 32 32 H 1.09000 * 109.47397 * 59.99656 * 1 2 3 33 33 H 1.09004 * 109.46664 * 240.00194 * 2 1 3 34 34 H 1.08998 * 109.46886 * 120.00315 * 2 1 3 35 35 H 1.09003 * 110.01630 * 28.60939 * 6 5 3 36 36 H 1.09000 * 110.48661 * 335.77897 * 7 6 5 37 37 H 1.09000 * 110.48962 * 98.42363 * 7 6 5 38 38 H 1.08991 * 110.75808 * 279.63153 * 8 7 6 39 39 H 1.08997 * 110.75149 * 156.25016 * 8 7 6 40 40 H 1.08994 * 110.48535 * 203.37604 * 9 8 7 41 41 H 1.09001 * 110.48255 * 80.73554 * 9 8 7 42 42 H 1.09004 * 110.03855 * 238.57334 * 10 6 5 43 43 H 1.09007 * 110.03130 * 0.02562 * 10 6 5 44 44 H 0.97001 * 120.00436 * 0.02562 * 13 11 3 45 45 H 1.09001 * 110.36852 * 160.08016 * 16 14 13 46 46 H 1.08998 * 110.36449 * 37.75664 * 16 14 13 47 47 H 0.97000 * 119.99477 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.87531 * 120.47707 * 26 17 16 49 49 H 1.09000 * 109.87938 * 241.63960 * 26 17 16 50 50 H 0.96702 * 114.00079 * 61.45168 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 0.3928 2.7356 1.1661 7 6 0.5781 4.2167 0.7766 8 6 -0.4852 4.9664 1.6172 9 6 -0.4580 4.2013 2.9637 10 6 -0.2661 2.7258 2.5566 11 6 3.5419 1.4443 -0.1239 12 8 4.2250 1.8610 0.7875 13 7 4.1260 0.9829 -1.2474 14 6 5.5860 0.9841 -1.3676 15 1 6.0562 0.8463 -0.3939 16 6 6.0869 2.2829 -2.0472 17 7 5.8973 2.0509 -3.4907 18 6 5.7552 3.0240 -4.4435 19 1 5.7730 4.0656 -4.1585 20 6 5.5882 2.6718 -5.7758 21 7 5.5660 1.4024 -6.1231 22 14 5.3951 3.9993 -7.0757 23 1 6.7321 4.3762 -7.6008 24 1 4.5540 3.4857 -8.1865 25 1 4.7459 5.1912 -6.4733 26 6 5.8924 0.6017 -3.7385 27 6 6.0622 -0.0973 -2.3732 28 1 7.1072 -0.3531 -2.1982 29 8 5.2356 -1.2602 -2.2942 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 -0.2531 2.2368 0.4434 36 1 1.5802 4.5572 1.0375 37 1 0.3915 4.3575 -0.2880 38 1 -1.4678 4.8934 1.1512 39 1 -0.2003 6.0089 1.7594 40 1 -1.4008 4.3309 3.4951 41 1 0.3767 4.5394 3.5777 42 1 -1.2320 2.2230 2.5087 43 1 0.3826 2.2223 3.2735 44 1 3.5797 0.6499 -1.9765 45 1 7.1415 2.4453 -1.8244 46 1 5.4932 3.1361 -1.7189 47 1 5.4497 1.1563 -7.0541 48 1 4.9457 0.3063 -4.1910 49 1 6.7193 0.3354 -4.3968 50 1 5.4425 -1.9355 -2.9546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220455319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:50 Heat of formation + Delta-G solvation = -137.556785 kcal Electronic energy + Delta-G solvation = -29615.722880 eV Core-core repulsion = 25642.333330 eV Total energy + Delta-G solvation = -3973.389549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37109 -40.16863 -39.13027 -37.11513 -36.61224 -35.35680 -34.12425 -33.29281 -30.51405 -29.75255 -29.40275 -28.77271 -27.33250 -26.18964 -23.34665 -22.32497 -21.94221 -21.61310 -21.35155 -21.13197 -19.12627 -18.37314 -18.33524 -17.94245 -17.25380 -16.61381 -16.47485 -16.43456 -15.84065 -15.69848 -15.50067 -15.08348 -14.84666 -14.63746 -14.38370 -14.27286 -13.99719 -13.76548 -13.45639 -13.24276 -13.13504 -13.07180 -12.98722 -12.93157 -12.77088 -12.52895 -12.17623 -12.04284 -12.03527 -11.95705 -11.91679 -11.90776 -11.70850 -11.48869 -11.34636 -10.90495 -10.81730 -10.77193 -10.33273 -10.06034 -8.91325 -7.87615 -5.22654 1.46396 1.47029 1.55597 1.56833 1.86706 2.46851 2.89987 3.16040 3.33450 3.57229 3.59437 3.64469 3.71844 3.82462 3.84575 3.94045 4.00469 4.02352 4.27009 4.34470 4.36265 4.48746 4.52130 4.56896 4.57534 4.62068 4.72437 4.75339 4.81587 4.83962 4.87923 4.92997 5.00869 5.06982 5.09053 5.16712 5.20751 5.28955 5.33675 5.39979 5.45023 5.47988 5.51146 5.69569 6.14812 6.21527 6.58387 6.87601 7.07773 7.22298 7.71482 8.35030 9.21864 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003512 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.552395 B = 7969.837150 C = 9085.195674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.080 3.920 4 H 0.094 0.906 5 O -0.371 6.371 6 C 0.067 3.933 7 C -0.158 4.158 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.120 4.120 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.685 5.685 14 C 0.147 3.853 15 H 0.099 0.901 16 C 0.123 3.877 17 N -0.616 5.616 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.055 4.055 21 N -0.944 5.944 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.274 1.274 26 C 0.162 3.838 27 C 0.088 3.912 28 H 0.089 0.911 29 O -0.560 6.560 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.409 0.591 45 H 0.041 0.959 46 H 0.034 0.966 47 H 0.249 0.751 48 H 0.031 0.969 49 H 0.018 0.982 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 -2.915 13.030 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.019 3.981 4 H 0.112 0.888 5 O -0.289 6.289 6 C 0.010 3.990 7 C -0.195 4.195 8 C -0.155 4.155 9 C -0.159 4.159 10 C -0.158 4.158 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.336 5.336 14 C 0.041 3.959 15 H 0.117 0.883 16 C -0.004 4.004 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.249 4.249 21 N -0.592 5.592 22 Si 0.803 3.197 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.199 1.199 26 C 0.037 3.963 27 C 0.027 3.973 28 H 0.106 0.894 29 O -0.367 6.367 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.245 0.755 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.037 0.963 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.366 -2.291 14.128 19.583 hybrid contribution 0.489 0.373 -2.087 2.175 sum -12.877 -1.918 12.041 17.734 Atomic orbital electron populations 1.21930 0.93081 1.03506 1.02557 1.21960 0.98530 0.93184 1.03505 1.21939 0.90135 0.96497 0.89524 0.88838 1.88075 1.37807 1.70958 1.32084 1.23368 0.84210 0.91943 0.99448 1.22984 0.99896 0.96125 1.00545 1.22429 0.98732 0.98955 0.95347 1.22348 1.02320 0.93986 0.97250 1.22246 1.00711 0.98086 0.94727 1.20954 0.91052 0.76607 0.81663 1.90644 1.66133 1.47942 1.40608 1.45443 1.06999 1.63192 1.17947 1.22042 0.81202 0.94316 0.98380 0.88310 1.22082 0.97999 0.95880 0.84390 1.44515 1.85728 1.02365 1.01768 1.19349 1.42543 0.87924 0.87431 0.90709 1.25503 1.02252 0.98418 0.98701 1.70107 1.57299 1.15528 1.16310 0.85144 0.77328 0.78453 0.78765 1.21464 1.21725 1.19949 1.21656 0.99253 0.83076 0.92345 1.23216 0.94315 0.85264 0.94479 0.89366 1.86369 1.61089 1.29158 1.60085 0.90663 0.91607 0.91614 0.89800 0.91504 0.89131 0.93157 0.91344 0.89661 0.91167 0.89371 0.92571 0.88698 0.91710 0.75522 0.94171 0.94808 0.94209 0.95044 0.96343 0.75404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.58 71.98 0.62 -1.88 16 2 C -0.13 -2.97 5.61 30.60 0.17 -2.80 16 3 C 0.08 2.24 2.67 29.85 0.08 2.32 16 4 H 0.09 2.39 7.80 -2.39 -0.02 2.37 16 5 O -0.37 -10.89 9.01 -129.99 -1.17 -12.06 16 6 C 0.07 1.45 2.08 31.32 0.07 1.52 16 7 C -0.16 -3.52 6.56 31.67 0.21 -3.32 16 8 C -0.12 -1.93 6.91 31.89 0.22 -1.71 16 9 C -0.12 -1.93 6.83 31.67 0.22 -1.72 16 10 C -0.12 -2.12 6.44 31.32 0.20 -1.92 16 11 C 0.51 18.25 7.18 87.66 0.63 18.88 16 12 O -0.57 -24.94 16.15 15.98 0.26 -24.68 16 13 N -0.69 -23.87 4.70 -435.98 -2.05 -25.93 16 14 C 0.15 5.41 3.31 46.39 0.15 5.56 16 15 H 0.10 3.59 7.54 -2.39 -0.02 3.57 16 16 C 0.12 5.24 6.93 86.86 0.60 5.84 16 17 N -0.62 -30.51 3.39 -691.98 -2.35 -32.86 16 18 C -0.24 -13.37 10.28 84.04 0.86 -12.50 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.06 -3.01 5.49 84.86 0.47 -2.55 16 21 N -0.94 -53.40 10.31 21.65 0.22 -53.18 16 22 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.16 7.30 5.13 86.73 0.45 7.75 16 27 C 0.09 3.02 4.12 31.78 0.13 3.15 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 O -0.56 -16.51 12.67 -148.98 -1.89 -18.40 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.03 5.79 -2.39 -0.01 1.02 16 32 H 0.06 0.96 8.01 -2.39 -0.02 0.94 16 33 H 0.08 1.81 7.77 -2.38 -0.02 1.79 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.60 5.34 -2.39 -0.01 1.59 16 36 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.06 1.34 7.96 -2.38 -0.02 1.32 16 44 H 0.41 13.76 8.09 -92.71 -0.75 13.01 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.03 1.57 7.31 -2.38 -0.02 1.55 16 49 H 0.02 0.93 7.49 -2.39 -0.02 0.91 16 50 H 0.40 8.70 9.11 -74.06 -0.67 8.02 16 Total: -1.00 -70.06 391.21 -0.37 -70.43 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.49 Total: 33.44 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 5.07 Total: 16.64 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.18 Total: -111.97 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -2.80 Total: -55.14 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.06 -0.37 -70.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220455319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.130 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds