Wall clock time and date at job start Tue Mar 31 2020 16:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 H 1.08999 * 109.47174 * 54.70408 * 3 2 1 5 5 O 1.42898 * 109.47034 * 294.70071 * 3 2 1 6 6 C 1.42910 * 113.99893 * 149.47874 * 5 3 2 7 7 C 1.54263 * 110.03427 * 270.53678 * 6 5 3 8 8 C 1.54888 * 104.19481 * 217.10517 * 7 6 5 9 9 C 1.54889 * 102.75090 * 37.93955 * 8 7 6 10 10 C 1.53871 * 110.03236 * 153.36611 * 6 5 3 11 11 C 1.50703 * 109.46914 * 174.70652 * 3 2 1 12 12 O 1.21276 * 120.00006 * 119.99952 * 11 3 2 13 13 N 1.34778 * 119.99447 * 299.99883 * 11 3 2 14 14 C 1.46508 * 119.99737 * 180.02562 * 13 11 3 15 15 H 1.09000 * 110.88456 * 31.11458 * 14 13 11 16 16 C 1.55132 * 111.19003 * 267.18704 * 14 13 11 17 17 N 1.47423 * 104.71986 * 279.19269 * 16 14 13 18 18 C 1.36939 * 125.64516 * 155.82255 * 17 16 14 19 19 H 1.07996 * 120.00257 * 5.88404 * 18 17 16 20 20 C 1.38820 * 119.99354 * 185.88369 * 18 17 16 21 21 N 1.31614 * 120.00073 * 8.23420 * 20 18 17 22 22 Si 1.86802 * 119.99438 * 188.22946 * 20 18 17 23 23 H 1.48501 * 109.47442 * 265.01698 * 22 20 18 24 24 H 1.48510 * 109.46661 * 145.02120 * 22 20 18 25 25 H 1.48498 * 109.47204 * 25.02216 * 22 20 18 26 26 C 1.47022 * 108.70074 * 335.54819 * 17 16 14 27 27 C 1.54317 * 107.27264 * 1.29355 * 26 17 16 28 28 H 1.09004 * 110.71675 * 263.64826 * 27 26 17 29 29 O 1.42899 * 110.71969 * 140.55468 * 27 26 17 30 30 H 1.08996 * 109.47302 * 65.30873 * 1 2 3 31 31 H 1.08995 * 109.46950 * 185.30857 * 1 2 3 32 32 H 1.09003 * 109.46865 * 305.30730 * 1 2 3 33 33 H 1.08998 * 109.47174 * 240.00401 * 2 1 3 34 34 H 1.08996 * 109.47117 * 119.99680 * 2 1 3 35 35 H 1.09001 * 110.00994 * 31.97826 * 6 5 3 36 36 H 1.09003 * 110.48429 * 335.78276 * 7 6 5 37 37 H 1.09002 * 110.48317 * 98.42382 * 7 6 5 38 38 H 1.09004 * 110.75113 * 279.62425 * 8 7 6 39 39 H 1.08997 * 110.75358 * 156.26023 * 8 7 6 40 40 H 1.08993 * 110.48562 * 203.37987 * 9 8 7 41 41 H 1.09004 * 110.48135 * 80.73434 * 9 8 7 42 42 H 1.08998 * 110.03185 * 238.57298 * 10 6 5 43 43 H 1.09005 * 110.03326 * 0.02562 * 10 6 5 44 44 H 0.96994 * 120.00653 * 0.02562 * 13 11 3 45 45 H 1.08997 * 110.49579 * 160.34751 * 16 14 13 46 46 H 1.09007 * 110.34469 * 37.95291 * 16 14 13 47 47 H 0.97008 * 119.99427 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.87715 * 120.70927 * 26 17 16 49 49 H 1.08998 * 109.88052 * 241.87077 * 26 17 16 50 50 H 0.96695 * 114.00091 * 61.45299 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6012 1.9830 0.8387 5 8 1.6679 2.0793 -1.2240 6 6 1.4497 3.4865 -1.1042 7 6 -0.0253 3.7642 -0.7479 8 6 -0.3703 5.0524 -1.5355 9 6 0.3897 4.8510 -2.8700 10 6 1.7136 4.1776 -2.4535 11 6 3.5413 1.4446 0.1311 12 8 4.2252 1.9424 -0.7380 13 7 4.1238 0.8933 1.2142 14 6 5.5833 0.8958 1.3420 15 1 6.0142 1.7727 0.8588 16 6 6.1983 -0.4095 0.7722 17 7 6.0286 -1.4039 1.8472 18 6 5.9777 -2.7618 1.6774 19 1 6.1597 -3.1915 0.7035 20 6 5.6920 -3.5860 2.7574 21 7 5.3118 -3.0614 3.9030 22 14 5.8472 -5.4395 2.5844 23 1 4.5220 -6.0178 2.2460 24 1 6.3271 -6.0176 3.8653 25 1 6.8160 -5.7564 1.5045 26 6 5.9297 -0.6967 3.1323 27 6 6.0114 0.8146 2.8311 28 1 7.0300 1.1796 2.9628 29 8 5.1037 1.5449 3.6586 30 1 -0.3634 0.4293 -0.9337 31 1 -0.3633 -1.0232 0.0951 32 1 -0.3633 0.5940 0.8387 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.1043 3.9016 -0.3378 36 1 -0.6581 2.9379 -1.0719 37 1 -0.1338 3.9316 0.3237 38 1 -0.0039 5.9352 -1.0116 39 1 -1.4441 5.1230 -1.7093 40 1 0.5839 5.8116 -3.3471 41 1 -0.1761 4.2003 -3.5368 42 1 2.4956 4.9286 -2.3417 43 1 2.0076 3.4395 -3.1998 44 1 3.5769 0.4949 1.9092 45 1 7.2559 -0.2677 0.5499 46 1 5.6604 -0.7227 -0.1227 47 1 5.1118 -3.6374 4.6575 48 1 4.9780 -0.9284 3.6107 49 1 6.7546 -0.9904 3.7815 50 1 5.2818 1.4629 4.6055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220455320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:56 Heat of formation + Delta-G solvation = -120.644878 kcal Electronic energy + Delta-G solvation = -29679.682219 eV Core-core repulsion = 25707.026025 eV Total energy + Delta-G solvation = -3972.656194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.05074 -38.81329 -37.68664 -36.03534 -35.07392 -33.86863 -33.01388 -31.56755 -28.84586 -28.75730 -28.00969 -27.32038 -26.29511 -24.34908 -22.12160 -21.04026 -20.64099 -20.42281 -20.26425 -19.62575 -17.48763 -17.20219 -16.79969 -16.58321 -15.94258 -15.61780 -15.01990 -14.67104 -14.60796 -14.23952 -14.02687 -13.91721 -13.63882 -13.46560 -13.24371 -12.73042 -12.54920 -12.45088 -12.24348 -11.96759 -11.83500 -11.79690 -11.49419 -11.28617 -11.26679 -11.23605 -11.01944 -10.89088 -10.85150 -10.77370 -10.72430 -10.50784 -10.24875 -10.14251 -10.10086 -9.87783 -9.33543 -8.94840 -8.77024 -8.48716 -6.91053 -5.78863 -3.14950 2.94699 3.35116 3.38614 3.41859 3.43624 3.81771 4.40646 4.44042 4.47578 4.58205 4.78338 4.89719 4.97973 5.08726 5.18099 5.22539 5.32296 5.34219 5.38073 5.38943 5.48460 5.49467 5.56006 5.59523 5.64507 5.69942 5.74513 5.78729 5.81352 5.88473 5.99301 6.05457 6.11603 6.13966 6.16518 6.19835 6.24310 6.33832 6.45632 6.60104 7.01747 7.19347 7.23363 7.47283 7.67403 7.99768 8.05325 8.15928 8.64339 9.11254 9.72373 10.36407 11.30409 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.003213 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.331518 B = 8711.587601 C = 9370.809321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.083 0.917 5 O -0.346 6.346 6 C 0.087 3.913 7 C -0.150 4.150 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.119 4.119 11 C 0.489 3.511 12 O -0.541 6.541 13 N -0.688 5.688 14 C 0.141 3.859 15 H 0.091 0.909 16 C 0.123 3.877 17 N -0.598 5.598 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.142 3.858 27 C 0.065 3.935 28 H 0.065 0.935 29 O -0.563 6.563 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.407 0.593 45 H 0.032 0.968 46 H 0.050 0.950 47 H 0.252 0.748 48 H 0.076 0.924 49 H 0.031 0.969 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 14.172 -4.981 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.100 0.900 5 O -0.263 6.263 6 C 0.029 3.971 7 C -0.188 4.188 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.156 4.156 11 C 0.274 3.726 12 O -0.418 6.418 13 N -0.340 5.340 14 C 0.035 3.965 15 H 0.109 0.891 16 C -0.004 4.004 17 N -0.325 5.325 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.016 3.984 27 C 0.005 3.995 28 H 0.083 0.917 29 O -0.368 6.368 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.242 0.758 45 H 0.049 0.951 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.049 0.951 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.877 14.408 -6.237 18.548 hybrid contribution 0.331 -1.314 1.237 1.834 sum -9.545 13.095 -5.000 16.958 Atomic orbital electron populations 1.21708 0.94746 1.01851 1.01968 1.21608 0.96937 0.92826 1.04205 1.22075 0.91066 0.96236 0.88890 0.89971 1.88040 1.87736 1.20314 1.30223 1.22803 0.94732 0.81604 0.97989 1.22970 0.97133 0.98578 1.00072 1.22425 1.00040 0.97439 0.96147 1.22350 0.96147 1.00303 0.97263 1.22143 0.97452 0.99376 0.96657 1.21272 0.91080 0.78299 0.81953 1.90658 1.64984 1.46071 1.40116 1.45569 1.07302 1.58672 1.22469 1.22179 0.80810 0.99099 0.94416 0.89105 1.22070 0.97193 0.88105 0.93059 1.44305 1.86092 1.01536 1.00598 1.19059 1.40913 0.79854 0.95580 0.90380 1.24779 1.01291 0.98139 0.96143 1.69910 1.51299 1.33321 1.02312 0.86111 0.77735 0.85081 0.76914 1.21605 1.21665 1.20643 1.21955 1.02280 0.85230 0.88897 1.23506 0.91657 0.94624 0.89692 0.91731 1.86402 1.56922 1.72634 1.20813 0.92132 0.92295 0.92913 0.90396 0.89571 0.92071 0.90316 0.91651 0.91510 0.91480 0.91654 0.91458 0.91129 0.90177 0.75821 0.95054 0.93163 0.93777 0.90624 0.95085 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.76 37.16 0.36 -1.24 16 2 C -0.12 -1.59 5.59 -26.73 -0.15 -1.74 16 3 C 0.08 1.12 2.34 -27.88 -0.07 1.06 16 4 H 0.08 1.02 7.81 -51.93 -0.41 0.61 16 5 O -0.35 -5.06 8.72 -55.14 -0.48 -5.54 16 6 C 0.09 1.07 3.13 -25.62 -0.08 0.99 16 7 C -0.15 -1.46 6.53 -25.07 -0.16 -1.63 16 8 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 9 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 10 C -0.12 -1.35 6.61 -25.61 -0.17 -1.52 16 11 C 0.49 8.60 7.19 -10.98 -0.08 8.52 16 12 O -0.54 -11.19 16.13 -14.35 -0.23 -11.42 16 13 N -0.69 -12.14 4.67 -51.61 -0.24 -12.38 16 14 C 0.14 2.63 3.31 -65.66 -0.22 2.41 16 15 H 0.09 1.68 7.54 -51.93 -0.39 1.29 16 16 C 0.12 2.59 6.95 -2.41 -0.02 2.58 16 17 N -0.60 -14.57 3.39 -169.93 -0.58 -15.14 16 18 C -0.23 -6.10 10.26 -15.06 -0.15 -6.25 16 19 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 20 C -0.01 -0.20 5.44 -17.43 -0.09 -0.29 16 21 N -0.92 -25.60 10.49 55.49 0.58 -25.02 16 22 Si 0.91 21.59 29.56 -169.99 -5.03 16.56 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.14 3.16 5.22 -3.07 -0.02 3.15 16 27 C 0.07 1.16 4.12 -24.90 -0.10 1.06 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 O -0.56 -8.92 12.67 -35.23 -0.45 -9.36 16 30 H 0.06 0.66 7.97 -51.93 -0.41 0.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 35 H 0.06 0.80 7.87 -51.93 -0.41 0.40 16 36 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 44 H 0.41 7.07 7.74 -40.82 -0.32 6.75 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.08 1.87 6.76 -51.92 -0.35 1.52 16 49 H 0.03 0.76 8.01 -51.93 -0.42 0.34 16 50 H 0.38 4.58 9.11 45.56 0.42 4.99 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -31.35 397.26 -9.85 -41.20 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.13 Total: 10.49 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.29 Total: 4.63 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.24 Total: -52.54 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.16 Total: -26.33 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.35 -9.85 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220455320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.450 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds