Wall clock time and date at job start Tue Mar 31 2020 16:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 H 1.08999 * 109.47174 * 54.70408 * 3 2 1 5 5 O 1.42898 * 109.47034 * 294.70071 * 3 2 1 6 6 C 1.42910 * 113.99893 * 149.47874 * 5 3 2 7 7 C 1.54263 * 110.03427 * 270.53678 * 6 5 3 8 8 C 1.54888 * 104.19481 * 217.10517 * 7 6 5 9 9 C 1.54889 * 102.75090 * 37.93955 * 8 7 6 10 10 C 1.53871 * 110.03236 * 153.36611 * 6 5 3 11 11 C 1.50703 * 109.46914 * 174.70652 * 3 2 1 12 12 O 1.21276 * 120.00006 * 119.99952 * 11 3 2 13 13 N 1.34778 * 119.99447 * 299.99883 * 11 3 2 14 14 C 1.46508 * 119.99737 * 180.02562 * 13 11 3 15 15 H 1.09000 * 110.88456 * 31.11458 * 14 13 11 16 16 C 1.55132 * 111.19003 * 267.18704 * 14 13 11 17 17 N 1.47423 * 104.71986 * 279.19269 * 16 14 13 18 18 C 1.36939 * 125.64516 * 155.82255 * 17 16 14 19 19 H 1.07996 * 120.00257 * 5.88404 * 18 17 16 20 20 C 1.38820 * 119.99354 * 185.88369 * 18 17 16 21 21 N 1.31614 * 120.00073 * 8.23420 * 20 18 17 22 22 Si 1.86802 * 119.99438 * 188.22946 * 20 18 17 23 23 H 1.48501 * 109.47442 * 265.01698 * 22 20 18 24 24 H 1.48510 * 109.46661 * 145.02120 * 22 20 18 25 25 H 1.48498 * 109.47204 * 25.02216 * 22 20 18 26 26 C 1.47022 * 108.70074 * 335.54819 * 17 16 14 27 27 C 1.54317 * 107.27264 * 1.29355 * 26 17 16 28 28 H 1.09004 * 110.71675 * 263.64826 * 27 26 17 29 29 O 1.42899 * 110.71969 * 140.55468 * 27 26 17 30 30 H 1.08996 * 109.47302 * 65.30873 * 1 2 3 31 31 H 1.08995 * 109.46950 * 185.30857 * 1 2 3 32 32 H 1.09003 * 109.46865 * 305.30730 * 1 2 3 33 33 H 1.08998 * 109.47174 * 240.00401 * 2 1 3 34 34 H 1.08996 * 109.47117 * 119.99680 * 2 1 3 35 35 H 1.09001 * 110.00994 * 31.97826 * 6 5 3 36 36 H 1.09003 * 110.48429 * 335.78276 * 7 6 5 37 37 H 1.09002 * 110.48317 * 98.42382 * 7 6 5 38 38 H 1.09004 * 110.75113 * 279.62425 * 8 7 6 39 39 H 1.08997 * 110.75358 * 156.26023 * 8 7 6 40 40 H 1.08993 * 110.48562 * 203.37987 * 9 8 7 41 41 H 1.09004 * 110.48135 * 80.73434 * 9 8 7 42 42 H 1.08998 * 110.03185 * 238.57298 * 10 6 5 43 43 H 1.09005 * 110.03326 * 0.02562 * 10 6 5 44 44 H 0.96994 * 120.00653 * 0.02562 * 13 11 3 45 45 H 1.08997 * 110.49579 * 160.34751 * 16 14 13 46 46 H 1.09007 * 110.34469 * 37.95291 * 16 14 13 47 47 H 0.97008 * 119.99427 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.87715 * 120.70927 * 26 17 16 49 49 H 1.08998 * 109.88052 * 241.87077 * 26 17 16 50 50 H 0.96695 * 114.00091 * 61.45299 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6012 1.9830 0.8387 5 8 1.6679 2.0793 -1.2240 6 6 1.4497 3.4865 -1.1042 7 6 -0.0253 3.7642 -0.7479 8 6 -0.3703 5.0524 -1.5355 9 6 0.3897 4.8510 -2.8700 10 6 1.7136 4.1776 -2.4535 11 6 3.5413 1.4446 0.1311 12 8 4.2252 1.9424 -0.7380 13 7 4.1238 0.8933 1.2142 14 6 5.5833 0.8958 1.3420 15 1 6.0142 1.7727 0.8588 16 6 6.1983 -0.4095 0.7722 17 7 6.0286 -1.4039 1.8472 18 6 5.9777 -2.7618 1.6774 19 1 6.1597 -3.1915 0.7035 20 6 5.6920 -3.5860 2.7574 21 7 5.3118 -3.0614 3.9030 22 14 5.8472 -5.4395 2.5844 23 1 4.5220 -6.0178 2.2460 24 1 6.3271 -6.0176 3.8653 25 1 6.8160 -5.7564 1.5045 26 6 5.9297 -0.6967 3.1323 27 6 6.0114 0.8146 2.8311 28 1 7.0300 1.1796 2.9628 29 8 5.1037 1.5449 3.6586 30 1 -0.3634 0.4293 -0.9337 31 1 -0.3633 -1.0232 0.0951 32 1 -0.3633 0.5940 0.8387 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.1043 3.9016 -0.3378 36 1 -0.6581 2.9379 -1.0719 37 1 -0.1338 3.9316 0.3237 38 1 -0.0039 5.9352 -1.0116 39 1 -1.4441 5.1230 -1.7093 40 1 0.5839 5.8116 -3.3471 41 1 -0.1761 4.2003 -3.5368 42 1 2.4956 4.9286 -2.3417 43 1 2.0076 3.4395 -3.1998 44 1 3.5769 0.4949 1.9092 45 1 7.2559 -0.2677 0.5499 46 1 5.6604 -0.7227 -0.1227 47 1 5.1118 -3.6374 4.6575 48 1 4.9780 -0.9284 3.6107 49 1 6.7546 -0.9904 3.7815 50 1 5.2818 1.4629 4.6055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220455320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:54 Heat of formation + Delta-G solvation = -141.445143 kcal Electronic energy + Delta-G solvation = -29680.584186 eV Core-core repulsion = 25707.026025 eV Total energy + Delta-G solvation = -3973.558161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38510 -40.06064 -39.03120 -37.07773 -36.61678 -35.37743 -34.28107 -33.32460 -30.41777 -29.63038 -29.19388 -28.70590 -27.55899 -26.19090 -23.29320 -22.37279 -21.97057 -21.54994 -21.27277 -21.10262 -19.11151 -18.45360 -18.33931 -17.94964 -17.18141 -16.83672 -16.52504 -16.04980 -15.88831 -15.67233 -15.47836 -15.01231 -14.91330 -14.76110 -14.34942 -14.24211 -14.01594 -13.74839 -13.46728 -13.25917 -13.20013 -13.11823 -12.88548 -12.76584 -12.69510 -12.49146 -12.05865 -12.03648 -11.99935 -11.95649 -11.87970 -11.83468 -11.78033 -11.51373 -11.45142 -11.25024 -10.87281 -10.75698 -10.22227 -10.04111 -8.89197 -7.85103 -5.23099 1.46347 1.47275 1.55190 1.56379 2.08378 2.47409 2.69267 3.14147 3.32998 3.55834 3.62663 3.66581 3.72458 3.86433 3.88223 3.92701 3.97344 4.03385 4.25995 4.33378 4.38560 4.50901 4.54101 4.57607 4.60475 4.61822 4.71153 4.81228 4.81870 4.85211 4.88742 4.94819 5.04744 5.08954 5.10658 5.20302 5.23917 5.29608 5.32636 5.39564 5.47259 5.50073 5.53759 5.71100 6.16417 6.18368 6.59209 6.86617 7.07643 7.22775 7.72054 8.35774 9.21519 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.003213 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.331518 B = 8711.587601 C = 9370.809321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.087 3.913 4 H 0.107 0.893 5 O -0.361 6.361 6 C 0.077 3.923 7 C -0.144 4.144 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.485 3.515 12 O -0.575 6.575 13 N -0.686 5.686 14 C 0.146 3.854 15 H 0.098 0.902 16 C 0.123 3.877 17 N -0.613 5.613 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.972 3.028 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.152 3.848 27 C 0.089 3.911 28 H 0.088 0.912 29 O -0.561 6.561 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.408 0.592 45 H 0.042 0.958 46 H 0.032 0.968 47 H 0.248 0.752 48 H 0.050 0.950 49 H 0.005 0.995 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.414 15.340 -4.721 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.026 3.974 4 H 0.124 0.876 5 O -0.279 6.279 6 C 0.020 3.980 7 C -0.182 4.182 8 C -0.155 4.155 9 C -0.155 4.155 10 C -0.160 4.160 11 C 0.272 3.728 12 O -0.455 6.455 13 N -0.337 5.337 14 C 0.039 3.961 15 H 0.116 0.884 16 C -0.004 4.004 17 N -0.341 5.341 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.248 4.248 21 N -0.588 5.588 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.201 1.201 26 C 0.027 3.973 27 C 0.028 3.972 28 H 0.106 0.894 29 O -0.368 6.368 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.244 0.756 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.023 0.977 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.239 15.594 -5.969 20.128 hybrid contribution 0.794 -1.659 1.130 2.158 sum -10.446 13.935 -4.840 18.075 Atomic orbital electron populations 1.21661 0.92429 1.02638 1.02778 1.21573 0.98895 0.92018 1.02786 1.22074 0.88574 0.96985 0.89782 0.87556 1.88032 1.87617 1.21678 1.30568 1.23032 0.96451 0.80385 0.98149 1.22929 0.94883 0.99360 1.01012 1.22438 1.00978 0.96849 0.95280 1.22336 0.94635 1.00702 0.97876 1.22183 0.99057 0.98963 0.95823 1.21969 0.92553 0.77179 0.81088 1.90634 1.66123 1.47577 1.41166 1.45587 1.06954 1.58513 1.22633 1.22066 0.81412 0.97709 0.94897 0.88422 1.22136 0.97716 0.88715 0.91796 1.44490 1.85953 1.01427 1.02208 1.19306 1.40841 0.81491 0.95554 0.90874 1.25482 1.01421 1.01861 0.96022 1.70084 1.51842 1.34229 1.02600 0.85175 0.77628 0.80495 0.76678 1.21337 1.21828 1.20076 1.21770 0.99759 0.88179 0.87598 1.23183 0.93136 0.91543 0.89335 0.89410 1.86369 1.56539 1.71646 1.22278 0.91980 0.91713 0.91213 0.92450 0.90359 0.93203 0.90346 0.90564 0.90755 0.89789 0.90224 0.91342 0.91275 0.92241 0.75604 0.94045 0.94938 0.94217 0.93207 0.97657 0.75418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.76 71.98 0.70 -2.12 16 2 C -0.11 -3.07 5.59 30.60 0.17 -2.90 16 3 C 0.09 2.44 2.34 29.85 0.07 2.51 16 4 H 0.11 2.45 7.81 -2.39 -0.02 2.43 16 5 O -0.36 -10.46 8.72 -129.94 -1.13 -11.59 16 6 C 0.08 1.84 3.13 31.32 0.10 1.94 16 7 C -0.14 -2.49 6.53 31.67 0.21 -2.29 16 8 C -0.12 -1.64 6.91 31.88 0.22 -1.42 16 9 C -0.12 -1.88 6.83 31.67 0.22 -1.67 16 10 C -0.12 -2.74 6.61 31.32 0.21 -2.54 16 11 C 0.49 17.08 7.19 87.66 0.63 17.71 16 12 O -0.58 -24.10 16.13 16.02 0.26 -23.84 16 13 N -0.69 -24.01 4.67 -435.59 -2.04 -26.05 16 14 C 0.15 5.35 3.31 46.46 0.15 5.50 16 15 H 0.10 3.52 7.54 -2.39 -0.02 3.50 16 16 C 0.12 5.23 6.95 86.93 0.60 5.83 16 17 N -0.61 -30.29 3.39 -691.54 -2.35 -32.64 16 18 C -0.24 -13.32 10.26 84.03 0.86 -12.46 16 19 H 0.07 3.97 7.84 -2.91 -0.02 3.95 16 20 C -0.05 -2.94 5.44 84.86 0.46 -2.48 16 21 N -0.94 -52.85 10.49 21.65 0.23 -52.63 16 22 Si 0.97 44.64 29.56 68.60 2.03 46.67 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.15 6.84 5.22 86.73 0.45 7.29 16 27 C 0.09 3.04 4.12 31.78 0.13 3.17 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 O -0.56 -16.65 12.67 -148.98 -1.89 -18.53 16 30 H 0.06 1.26 7.97 -2.39 -0.02 1.24 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.20 7.42 -2.39 -0.02 2.18 16 35 H 0.05 1.28 7.87 -2.39 -0.02 1.26 16 36 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.55 7.96 -2.38 -0.02 1.54 16 44 H 0.41 14.06 7.74 -92.71 -0.72 13.34 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.25 13.64 8.31 -92.70 -0.77 12.87 16 48 H 0.05 2.50 6.76 -2.38 -0.02 2.48 16 49 H 0.01 0.26 8.01 -2.39 -0.02 0.24 16 50 H 0.40 8.72 9.11 -74.06 -0.67 8.05 16 Total: -1.00 -68.01 397.26 -0.17 -68.18 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.46 Total: 34.35 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 5.19 Total: 16.08 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.15 Total: -111.31 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -2.76 Total: -53.97 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.01 -0.17 -68.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220455320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.265 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds