Wall clock time and date at job start Tue Mar 31 2020 14:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47626 * 2 1 4 4 C 1.53002 * 109.47198 * 239.99790 * 2 1 3 5 5 O 1.45203 * 109.47051 * 119.99951 * 2 1 3 6 6 C 1.34638 * 116.99928 * 59.99467 * 5 2 1 7 7 O 1.21508 * 119.99950 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99967 * 179.97438 * 6 5 2 9 9 C 1.46505 * 120.00038 * 185.05098 * 8 6 5 10 10 C 1.53005 * 115.54939 * 65.41086 * 9 8 6 11 11 O 1.42894 * 109.47186 * 58.55602 * 10 9 8 12 12 C 1.42899 * 114.00189 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.63999 * 328.31144 * 12 11 10 14 14 C 1.55157 * 110.72344 * 204.97635 * 12 11 10 15 15 C 1.55123 * 101.48410 * 205.96831 * 14 12 11 16 16 N 1.47421 * 104.72576 * 37.29781 * 15 14 12 17 17 C 1.36938 * 125.64865 * 155.81997 * 16 15 14 18 18 H 1.08003 * 119.99746 * 190.15123 * 17 16 15 19 19 C 1.38805 * 120.00150 * 10.14341 * 17 16 15 20 20 N 1.31621 * 119.99956 * 8.97527 * 19 17 16 21 21 Si 1.86803 * 120.00197 * 188.96701 * 19 17 16 22 22 H 1.48508 * 109.46753 * 84.99524 * 21 19 17 23 23 H 1.48497 * 109.46903 * 325.00006 * 21 19 17 24 24 H 1.48493 * 109.47415 * 204.99715 * 21 19 17 25 25 C 1.47020 * 108.70105 * 335.54643 * 16 15 14 26 26 C 1.52996 * 117.49934 * 211.08116 * 9 8 6 27 27 C 1.53002 * 117.49903 * 279.73978 * 9 8 6 28 28 H 1.08999 * 109.47186 * 300.00382 * 1 2 3 29 29 H 1.09000 * 109.47034 * 60.00088 * 1 2 3 30 30 H 1.08999 * 109.47638 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47751 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46842 * 300.00029 * 3 2 1 33 33 H 1.08999 * 109.47150 * 59.99596 * 3 2 1 34 34 H 1.09008 * 109.47091 * 300.00419 * 4 2 1 35 35 H 1.09000 * 109.47029 * 60.00119 * 4 2 1 36 36 H 1.08998 * 109.47270 * 180.02562 * 4 2 1 37 37 H 0.96995 * 119.99988 * 5.05317 * 8 6 5 38 38 H 1.09004 * 109.46990 * 298.55440 * 10 9 8 39 39 H 1.09002 * 109.46684 * 178.55812 * 10 9 8 40 40 H 1.09000 * 111.00167 * 324.20910 * 14 12 11 41 41 H 1.08995 * 111.00238 * 88.05527 * 14 12 11 42 42 H 1.09003 * 110.49658 * 278.44531 * 15 14 12 43 43 H 1.09003 * 110.34401 * 156.06171 * 15 14 12 44 44 H 0.97002 * 120.00036 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.87970 * 120.70540 * 25 16 15 46 46 H 1.08998 * 109.88431 * 241.71856 * 25 16 15 47 47 H 1.09004 * 117.50058 * 215.00681 * 26 9 8 48 48 H 1.09006 * 117.49831 * 0.02562 * 26 9 8 49 49 H 1.08998 * 117.49614 * 359.97438 * 27 9 8 50 50 H 1.09000 * 117.49486 * 144.97353 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4167 9 6 1.7677 -4.0953 2.5288 10 6 2.4345 -4.9934 1.4848 11 8 3.8535 -4.8457 1.5659 12 6 4.5758 -5.6456 0.6276 13 1 4.0429 -6.5746 0.4243 14 6 6.0113 -5.9329 1.1414 15 6 6.7757 -6.1608 -0.1891 16 7 6.1859 -5.1919 -1.1308 17 6 6.8004 -4.6870 -2.2455 18 1 6.3538 -3.8625 -2.7815 19 6 7.9972 -5.2345 -2.6864 20 7 8.4518 -6.3449 -2.1453 21 14 8.9627 -4.3957 -4.0480 22 1 9.8262 -3.3384 -3.4633 23 1 8.0200 -3.7843 -5.0188 24 1 9.8094 -5.3976 -4.7440 25 6 4.8263 -4.8627 -0.6785 26 6 1.5747 -4.6686 3.9340 27 6 0.3689 -4.4879 3.0086 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.5658 -2.2182 3.1186 38 1 2.0957 -4.7066 0.4892 39 1 2.1658 -6.0325 1.6748 40 1 6.4110 -5.0759 1.6836 41 1 6.0325 -6.8295 1.7607 42 1 6.6234 -7.1790 -0.5471 43 1 7.8386 -5.9602 -0.0546 44 1 9.2880 -6.7278 -2.4536 45 1 4.7475 -3.7921 -0.4899 46 1 4.1014 -5.1598 -1.4364 47 1 1.9229 -5.6856 4.1149 48 1 1.6707 -3.9820 4.7753 49 1 -0.3278 -3.6826 3.2413 50 1 -0.0764 -5.3859 2.5802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224795673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:03 Heat of formation + Delta-G solvation = -72.033369 kcal Electronic energy + Delta-G solvation = -29537.376411 eV Core-core repulsion = 25566.828170 eV Total energy + Delta-G solvation = -3970.548241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.81190 -39.05754 -37.88578 -36.47751 -35.48455 -34.25696 -32.56684 -32.12749 -29.23588 -27.56090 -27.50032 -27.38212 -26.47094 -24.19195 -23.42561 -22.67922 -20.45759 -20.15334 -20.05811 -19.73985 -18.17307 -16.98799 -16.84513 -16.29258 -16.14140 -16.00306 -15.12651 -14.63595 -14.59112 -14.50411 -14.31510 -13.85084 -13.75375 -13.53844 -13.18606 -12.59100 -12.40682 -12.34517 -12.08653 -11.99972 -11.91086 -11.82540 -11.73577 -11.62760 -11.56383 -11.35893 -11.15667 -11.00474 -10.83066 -10.72112 -10.42878 -10.34110 -10.29804 -10.07371 -9.94293 -9.75050 -9.64334 -9.15553 -9.02811 -8.56083 -6.76770 -5.71529 -3.04233 2.07069 2.88781 3.34489 3.42615 3.47364 3.49101 3.91839 3.99128 4.49991 4.53975 4.64620 4.68627 4.74998 4.83864 4.86992 5.29174 5.35724 5.35898 5.39310 5.46348 5.47334 5.50795 5.55719 5.57257 5.60522 5.64848 5.73831 5.77977 5.79538 5.83839 5.84689 5.91035 5.92888 6.16877 6.29570 6.35615 6.44224 6.53949 6.55734 6.58865 6.68864 6.79314 7.41838 7.51534 7.58504 7.67131 7.81574 8.29240 8.43039 9.22636 9.84155 10.51831 11.41676 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.003788 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.969265 B = 7390.131512 C = 9500.048832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.365 6.365 6 C 0.657 3.343 7 O -0.562 6.562 8 N -0.674 5.674 9 C 0.125 3.875 10 C 0.088 3.912 11 O -0.372 6.372 12 C 0.078 3.922 13 H 0.062 0.938 14 C -0.137 4.137 15 C 0.174 3.826 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.119 3.881 26 C -0.161 4.161 27 C -0.164 4.164 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.407 0.593 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.028 0.972 43 H 0.073 0.927 44 H 0.253 0.747 45 H 0.030 0.970 46 H 0.019 0.981 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 8.596 12.148 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.411 3.589 7 O -0.450 6.450 8 N -0.332 5.332 9 C 0.038 3.962 10 C 0.010 3.990 11 O -0.291 6.291 12 C 0.020 3.980 13 H 0.080 0.920 14 C -0.176 4.176 15 C 0.049 3.951 16 N -0.328 5.328 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.207 1.207 24 H -0.217 1.217 25 C -0.007 4.007 26 C -0.198 4.198 27 C -0.202 4.202 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.037 0.963 47 H 0.129 0.871 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.113 8.497 11.657 22.382 hybrid contribution 0.612 0.480 -0.739 1.072 sum -16.502 8.977 10.918 21.728 Atomic orbital electron populations 1.22510 0.94219 1.04994 1.02187 1.22054 0.94059 0.91467 0.82293 1.21861 1.02579 0.92553 1.02819 1.22520 1.02199 1.03442 0.96029 1.86291 1.71451 1.23791 1.46493 1.17988 0.78588 0.80364 0.81990 1.90883 1.40784 1.70330 1.43017 1.43781 1.59803 1.07739 1.21837 1.20322 0.99261 0.79445 0.97134 1.22168 0.82479 0.96366 0.98016 1.87909 1.15884 1.67197 1.58074 1.23202 0.92898 0.92345 0.89543 0.91958 1.23152 0.93603 1.00700 1.00117 1.21465 0.97312 0.92523 0.83817 1.44369 1.10011 1.51199 1.27185 1.19022 1.03296 1.11171 1.02001 0.90717 1.24812 0.99098 0.96916 0.99539 1.69941 1.22219 1.19604 1.44990 0.86144 0.79961 0.78415 0.81310 1.21501 1.20703 1.21673 1.21687 0.88661 0.97335 0.93044 1.23384 1.01228 1.02954 0.92282 1.23375 0.90896 1.03749 1.02176 0.92472 0.91231 0.89341 0.91259 0.90195 0.91704 0.89274 0.91283 0.91720 0.75696 0.91630 0.92373 0.91215 0.91899 0.95408 0.90851 0.93688 0.95188 0.96308 0.87130 0.87995 0.88088 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.14 1.64 1.13 -90.62 -0.10 1.54 16 3 C -0.14 -1.30 8.85 37.15 0.33 -0.97 16 4 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 5 O -0.37 -5.02 9.94 -40.32 -0.40 -5.42 16 6 C 0.66 9.55 7.91 54.05 0.43 9.97 16 7 O -0.56 -9.12 10.98 -19.28 -0.21 -9.33 16 8 N -0.67 -8.42 5.44 -52.46 -0.29 -8.71 16 9 C 0.13 1.48 1.91 -131.81 -0.25 1.23 16 10 C 0.09 1.26 5.61 37.16 0.21 1.47 16 11 O -0.37 -6.44 10.05 -35.23 -0.35 -6.80 16 12 C 0.08 1.50 3.40 -24.90 -0.08 1.41 16 13 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 14 C -0.14 -2.73 6.82 -24.47 -0.17 -2.90 16 15 C 0.17 4.34 5.43 -2.42 -0.01 4.33 16 16 N -0.60 -16.20 3.39 -169.94 -0.58 -16.78 16 17 C -0.23 -6.58 10.24 -15.06 -0.15 -6.74 16 18 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 19 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 20 N -0.92 -27.47 10.67 55.49 0.59 -26.87 16 21 Si 0.91 22.55 29.56 -169.99 -5.03 17.53 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.12 2.75 7.02 -3.06 -0.02 2.72 16 26 C -0.16 -1.38 10.16 -26.70 -0.27 -1.66 16 27 C -0.16 -1.52 10.18 -26.69 -0.27 -1.79 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.40 5.88 -51.92 -0.31 1.09 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.41 4.30 8.94 -40.82 -0.36 3.94 16 38 H 0.07 1.08 7.27 -51.93 -0.38 0.71 16 39 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 43 H 0.07 2.01 6.92 -51.93 -0.36 1.65 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.03 0.72 8.06 -51.93 -0.42 0.31 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -33.18 399.28 -8.93 -42.11 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.84 Total: 3.70 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 0.16 Total: 4.55 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.27 Total: -52.36 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.97 Total: -21.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.18 -8.93 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224795673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.924 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds