Wall clock time and date at job start Tue Mar 31 2020 14:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47626 * 2 1 4 4 C 1.53002 * 109.47198 * 239.99790 * 2 1 3 5 5 O 1.45203 * 109.47051 * 119.99951 * 2 1 3 6 6 C 1.34638 * 116.99928 * 59.99467 * 5 2 1 7 7 O 1.21508 * 119.99950 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99967 * 179.97438 * 6 5 2 9 9 C 1.46505 * 120.00038 * 185.05098 * 8 6 5 10 10 C 1.53005 * 115.54939 * 65.41086 * 9 8 6 11 11 O 1.42894 * 109.47186 * 58.55602 * 10 9 8 12 12 C 1.42899 * 114.00189 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.63999 * 328.31144 * 12 11 10 14 14 C 1.55157 * 110.72344 * 204.97635 * 12 11 10 15 15 C 1.55123 * 101.48410 * 205.96831 * 14 12 11 16 16 N 1.47421 * 104.72576 * 37.29781 * 15 14 12 17 17 C 1.36938 * 125.64865 * 155.81997 * 16 15 14 18 18 H 1.08003 * 119.99746 * 190.15123 * 17 16 15 19 19 C 1.38805 * 120.00150 * 10.14341 * 17 16 15 20 20 N 1.31621 * 119.99956 * 8.97527 * 19 17 16 21 21 Si 1.86803 * 120.00197 * 188.96701 * 19 17 16 22 22 H 1.48508 * 109.46753 * 84.99524 * 21 19 17 23 23 H 1.48497 * 109.46903 * 325.00006 * 21 19 17 24 24 H 1.48493 * 109.47415 * 204.99715 * 21 19 17 25 25 C 1.47020 * 108.70105 * 335.54643 * 16 15 14 26 26 C 1.52996 * 117.49934 * 211.08116 * 9 8 6 27 27 C 1.53002 * 117.49903 * 279.73978 * 9 8 6 28 28 H 1.08999 * 109.47186 * 300.00382 * 1 2 3 29 29 H 1.09000 * 109.47034 * 60.00088 * 1 2 3 30 30 H 1.08999 * 109.47638 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47751 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46842 * 300.00029 * 3 2 1 33 33 H 1.08999 * 109.47150 * 59.99596 * 3 2 1 34 34 H 1.09008 * 109.47091 * 300.00419 * 4 2 1 35 35 H 1.09000 * 109.47029 * 60.00119 * 4 2 1 36 36 H 1.08998 * 109.47270 * 180.02562 * 4 2 1 37 37 H 0.96995 * 119.99988 * 5.05317 * 8 6 5 38 38 H 1.09004 * 109.46990 * 298.55440 * 10 9 8 39 39 H 1.09002 * 109.46684 * 178.55812 * 10 9 8 40 40 H 1.09000 * 111.00167 * 324.20910 * 14 12 11 41 41 H 1.08995 * 111.00238 * 88.05527 * 14 12 11 42 42 H 1.09003 * 110.49658 * 278.44531 * 15 14 12 43 43 H 1.09003 * 110.34401 * 156.06171 * 15 14 12 44 44 H 0.97002 * 120.00036 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.87970 * 120.70540 * 25 16 15 46 46 H 1.08998 * 109.88431 * 241.71856 * 25 16 15 47 47 H 1.09004 * 117.50058 * 215.00681 * 26 9 8 48 48 H 1.09006 * 117.49831 * 0.02562 * 26 9 8 49 49 H 1.08998 * 117.49614 * 359.97438 * 27 9 8 50 50 H 1.09000 * 117.49486 * 144.97353 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4167 9 6 1.7677 -4.0953 2.5288 10 6 2.4345 -4.9934 1.4848 11 8 3.8535 -4.8457 1.5659 12 6 4.5758 -5.6456 0.6276 13 1 4.0429 -6.5746 0.4243 14 6 6.0113 -5.9329 1.1414 15 6 6.7757 -6.1608 -0.1891 16 7 6.1859 -5.1919 -1.1308 17 6 6.8004 -4.6870 -2.2455 18 1 6.3538 -3.8625 -2.7815 19 6 7.9972 -5.2345 -2.6864 20 7 8.4518 -6.3449 -2.1453 21 14 8.9627 -4.3957 -4.0480 22 1 9.8262 -3.3384 -3.4633 23 1 8.0200 -3.7843 -5.0188 24 1 9.8094 -5.3976 -4.7440 25 6 4.8263 -4.8627 -0.6785 26 6 1.5747 -4.6686 3.9340 27 6 0.3689 -4.4879 3.0086 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.5658 -2.2182 3.1186 38 1 2.0957 -4.7066 0.4892 39 1 2.1658 -6.0325 1.6748 40 1 6.4110 -5.0759 1.6836 41 1 6.0325 -6.8295 1.7607 42 1 6.6234 -7.1790 -0.5471 43 1 7.8386 -5.9602 -0.0546 44 1 9.2880 -6.7278 -2.4536 45 1 4.7475 -3.7921 -0.4899 46 1 4.1014 -5.1598 -1.4364 47 1 1.9229 -5.6856 4.1149 48 1 1.6707 -3.9820 4.7753 49 1 -0.3278 -3.6826 3.2413 50 1 -0.0764 -5.3859 2.5802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224795673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:01 Heat of formation + Delta-G solvation = -94.132979 kcal Electronic energy + Delta-G solvation = -29538.334721 eV Core-core repulsion = 25566.828170 eV Total energy + Delta-G solvation = -3971.506552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.84265 -40.22340 -39.28696 -37.62664 -37.00109 -35.25453 -34.19405 -33.50240 -31.18229 -29.19550 -28.38394 -28.30748 -27.91801 -26.19299 -24.40986 -23.40132 -22.21120 -21.82346 -21.19160 -20.79785 -19.19747 -18.98117 -18.09678 -17.57120 -17.20229 -17.04742 -16.75700 -16.38725 -15.77883 -15.59890 -15.46414 -15.23279 -15.21473 -14.62439 -14.43922 -14.32508 -13.67740 -13.56611 -13.37875 -13.24971 -13.11077 -12.92987 -12.91517 -12.86148 -12.72851 -12.61742 -12.45197 -12.41860 -12.32519 -12.15824 -12.04127 -11.87231 -11.84223 -11.50049 -11.38117 -11.26725 -11.01717 -10.74711 -10.46044 -10.12237 -8.93739 -7.93086 -5.29494 1.12407 1.42872 1.45823 1.54000 1.81094 2.32198 2.47669 2.91988 3.08163 3.26097 3.62431 3.69635 3.74221 3.76296 3.79134 3.91446 3.93558 3.96764 4.05109 4.13944 4.34561 4.46998 4.54397 4.59757 4.60162 4.67505 4.71815 4.74684 4.75388 4.78556 4.84248 4.86637 4.93709 4.94847 4.99524 5.01609 5.09590 5.20194 5.26452 5.29686 5.37530 5.42222 5.54028 5.61562 5.65275 6.14047 6.26365 6.43177 7.02915 7.39320 7.68367 8.35117 9.18591 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.003788 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.969265 B = 7390.131512 C = 9500.048832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.128 3.872 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.373 6.373 6 C 0.648 3.352 7 O -0.585 6.585 8 N -0.667 5.667 9 C 0.089 3.911 10 C 0.085 3.915 11 O -0.375 6.375 12 C 0.094 3.906 13 H 0.082 0.918 14 C -0.119 4.119 15 C 0.178 3.822 16 N -0.622 5.622 17 C -0.253 4.253 18 H 0.070 0.930 19 C -0.056 4.056 20 N -0.945 5.945 21 Si 0.980 3.020 22 H -0.282 1.282 23 H -0.272 1.272 24 H -0.288 1.288 25 C 0.119 3.881 26 C -0.133 4.133 27 C -0.154 4.154 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.415 0.585 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.008 0.992 43 H 0.042 0.958 44 H 0.252 0.748 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.103 0.897 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.109 9.220 13.636 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.092 3.908 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.288 6.288 6 C 0.402 3.598 7 O -0.475 6.475 8 N -0.326 5.326 9 C 0.003 3.997 10 C 0.007 3.993 11 O -0.293 6.293 12 C 0.036 3.964 13 H 0.100 0.900 14 C -0.158 4.158 15 C 0.053 3.947 16 N -0.349 5.349 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.592 5.592 21 Si 0.807 3.193 22 H -0.209 1.209 23 H -0.197 1.197 24 H -0.214 1.214 25 C -0.007 4.007 26 C -0.170 4.170 27 C -0.192 4.192 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.252 0.748 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.121 0.879 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.193 9.132 13.179 24.250 hybrid contribution 0.887 0.295 -1.227 1.542 sum -17.306 9.427 11.952 23.048 Atomic orbital electron populations 1.22430 0.93093 1.03846 1.03769 1.22353 0.95066 0.92439 0.80970 1.21886 1.02052 0.90774 1.04594 1.22475 1.00823 1.02330 0.98220 1.86298 1.71658 1.23586 1.47254 1.18284 0.78616 0.80620 0.82324 1.90868 1.41901 1.70809 1.43926 1.43843 1.59301 1.08080 1.21347 1.20456 1.01577 0.78653 0.99021 1.22335 0.80665 0.98599 0.97675 1.87898 1.17688 1.66997 1.56751 1.22928 0.93247 0.92484 0.87730 0.89990 1.22964 0.92931 1.02294 0.97564 1.21299 0.96289 0.91020 0.86088 1.44672 1.11667 1.51403 1.27191 1.19330 1.04183 1.11602 1.03092 0.91170 1.25660 0.99775 0.97549 1.02042 1.70124 1.22319 1.20641 1.46142 0.85095 0.78368 0.77376 0.78474 1.20878 1.19711 1.21351 1.21768 0.86837 0.96944 0.95143 1.23536 0.99087 1.03659 0.90716 1.23448 0.90110 1.04008 1.01612 0.91261 0.89214 0.91788 0.92111 0.87949 0.90382 0.92228 0.89062 0.93663 0.74770 0.94704 0.89720 0.91439 0.88206 0.97378 0.93984 0.93907 0.96919 0.97138 0.85754 0.86162 0.87866 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 8.37 71.98 0.60 -2.97 16 2 C 0.13 3.01 1.13 -10.80 -0.01 3.00 16 3 C -0.14 -2.32 8.85 71.98 0.64 -1.68 16 4 C -0.18 -4.98 8.37 71.98 0.60 -4.38 16 5 O -0.37 -10.35 9.94 -55.47 -0.55 -10.90 16 6 C 0.65 19.13 7.91 129.79 1.03 20.16 16 7 O -0.58 -19.70 10.98 19.81 0.22 -19.48 16 8 N -0.67 -16.29 5.44 -550.31 -2.99 -19.28 16 9 C 0.09 1.98 1.91 3.60 0.01 1.99 16 10 C 0.08 2.35 5.61 71.98 0.40 2.75 16 11 O -0.37 -12.57 10.05 -148.98 -1.50 -14.07 16 12 C 0.09 3.56 3.40 31.78 0.11 3.67 16 13 H 0.08 2.79 7.88 -2.38 -0.02 2.77 16 14 C -0.12 -4.62 6.82 32.06 0.22 -4.40 16 15 C 0.18 9.07 5.43 86.93 0.47 9.55 16 16 N -0.62 -34.63 3.39 -691.57 -2.35 -36.98 16 17 C -0.25 -15.17 10.24 84.03 0.86 -14.31 16 18 H 0.07 4.13 7.84 -2.91 -0.02 4.11 16 19 C -0.06 -3.31 5.41 84.86 0.46 -2.85 16 20 N -0.94 -57.63 10.67 21.65 0.23 -57.40 16 21 Si 0.98 46.98 29.56 68.60 2.03 49.00 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.12 5.66 7.02 86.73 0.61 6.27 16 26 C -0.13 -1.83 10.16 30.62 0.31 -1.52 16 27 C -0.15 -2.49 10.18 30.62 0.31 -2.18 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.66 5.88 -2.39 -0.01 1.64 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 2.00 5.88 -2.38 -0.01 1.98 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.42 8.38 8.94 -92.71 -0.83 7.55 16 38 H 0.03 1.18 7.27 -2.38 -0.02 1.16 16 39 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.01 0.44 8.07 -2.39 -0.02 0.43 16 43 H 0.04 2.37 6.92 -2.39 -0.02 2.36 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.01 0.64 8.06 -2.39 -0.02 0.62 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.93 399.28 1.79 -73.14 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.09 Total: 22.88 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.62 Total: 13.09 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -5.11 Total: -113.66 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.83 Total: -44.45 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.93 1.79 -73.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224795673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.993 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds