Wall clock time and date at job start Tue Mar 31 2020 14:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53007 * 109.47120 * 240.00490 * 2 1 3 5 5 O 1.45191 * 109.47344 * 120.00426 * 2 1 3 6 6 C 1.34637 * 116.99818 * 59.27553 * 5 2 1 7 7 O 1.21512 * 120.00346 * 3.00834 * 6 5 2 8 8 N 1.34777 * 120.00031 * 183.01633 * 6 5 2 9 9 C 1.46497 * 120.00162 * 184.62328 * 8 6 5 10 10 C 1.53003 * 115.54899 * 56.55098 * 9 8 6 11 11 O 1.42903 * 109.47262 * 58.77931 * 10 9 8 12 12 C 1.42892 * 114.00079 * 184.94704 * 11 10 9 13 13 C 1.53517 * 114.16983 * 145.72440 * 12 11 10 14 14 N 1.47486 * 87.93001 * 87.62398 * 13 12 11 15 15 C 1.46899 * 110.99760 * 138.70403 * 14 13 12 16 16 C 1.50704 * 109.46966 * 169.99992 * 15 14 13 17 17 H 1.07994 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99995 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00246 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00216 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46812 * 270.00306 * 20 18 16 22 22 H 1.48493 * 109.46724 * 30.00073 * 20 18 16 23 23 H 1.48493 * 109.47097 * 150.00020 * 20 18 16 24 24 C 1.47476 * 87.83566 * 27.01259 * 14 13 12 25 25 C 1.52999 * 117.49975 * 202.22094 * 9 8 6 26 26 C 1.53002 * 117.50042 * 270.88026 * 9 8 6 27 27 H 1.08997 * 109.46743 * 304.62260 * 1 2 3 28 28 H 1.09007 * 109.46761 * 64.62403 * 1 2 3 29 29 H 1.09004 * 109.47102 * 184.62026 * 1 2 3 30 30 H 1.08995 * 109.47276 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47643 * 300.00366 * 3 2 1 32 32 H 1.09006 * 109.46776 * 60.00388 * 3 2 1 33 33 H 1.09000 * 109.47206 * 300.00293 * 4 2 1 34 34 H 1.09002 * 109.46964 * 60.00097 * 4 2 1 35 35 H 1.08995 * 109.47036 * 179.97438 * 4 2 1 36 36 H 0.97003 * 119.99925 * 4.61901 * 8 6 5 37 37 H 1.08997 * 109.47527 * 298.77737 * 10 9 8 38 38 H 1.08998 * 109.47299 * 178.77557 * 10 9 8 39 39 H 1.09001 * 113.38753 * 12.64766 * 12 11 10 40 40 H 1.08998 * 113.47811 * 332.86136 * 13 12 11 41 41 H 1.09000 * 113.47512 * 202.38929 * 13 12 11 42 42 H 1.09003 * 109.47476 * 49.99920 * 15 14 13 43 43 H 1.09006 * 109.47003 * 289.99907 * 15 14 13 44 44 H 0.96997 * 120.00536 * 179.97438 * 19 18 16 45 45 H 1.09004 * 113.48124 * 87.75340 * 24 14 13 46 46 H 1.09005 * 113.47700 * 218.22037 * 24 14 13 47 47 H 1.09013 * 117.50033 * 215.00565 * 25 9 8 48 48 H 1.09001 * 117.50259 * 0.02562 * 25 9 8 49 49 H 1.08995 * 117.49746 * 359.97438 * 26 9 8 50 50 H 1.09007 * 117.49826 * 144.97303 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6399 -1.9679 1.3457 7 8 0.9739 -2.5179 0.4910 8 7 2.0040 -2.6426 2.4542 9 6 1.6845 -4.0664 2.5832 10 6 2.2120 -4.9652 1.4629 11 8 3.6350 -4.8540 1.3931 12 6 4.2212 -5.5698 0.3041 13 6 5.4568 -4.8900 -0.3023 14 7 6.2727 -5.5964 0.7029 15 6 7.5163 -6.1046 0.1088 16 6 8.4295 -6.5988 1.2011 17 1 8.1170 -6.5415 2.2332 18 6 9.6634 -7.1251 0.8825 19 7 10.0437 -7.1954 -0.3745 20 14 10.7956 -7.7371 2.2364 21 1 11.6652 -6.6241 2.6951 22 1 9.9821 -8.2316 3.3760 23 1 11.6395 -8.8418 1.7143 24 6 5.2335 -6.6426 0.7294 25 6 1.6329 -4.6538 3.9950 26 6 0.3377 -4.4344 3.2091 27 1 -0.3633 0.5839 0.8457 28 1 -0.3633 0.4404 -0.9286 29 1 -0.3633 -1.0244 0.0828 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9565 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2495 34 1 1.6767 -0.2072 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 2.4777 -2.1853 3.1666 37 1 1.7763 -4.6555 0.5130 38 1 1.9381 -6.0001 1.6680 39 1 3.4928 -5.9103 -0.4319 40 1 5.4601 -3.8068 -0.1808 41 1 5.6646 -5.2007 -1.3263 42 1 8.0094 -5.3039 -0.4425 43 1 7.2855 -6.9250 -0.5708 44 1 10.9119 -7.5653 -0.5986 45 1 5.3817 -7.4209 -0.0192 46 1 5.0475 -7.0448 1.7253 47 1 1.9748 -5.6807 4.1257 48 1 1.8362 -3.9808 4.8279 49 1 -0.3103 -3.6171 3.5253 50 1 -0.1727 -5.3166 2.8225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224796664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:57 Heat of formation + Delta-G solvation = -54.947483 kcal Electronic energy + Delta-G solvation = -28913.242717 eV Core-core repulsion = 24943.435375 eV Total energy + Delta-G solvation = -3969.807341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92303 -39.58342 -38.74641 -36.65407 -35.82264 -34.35943 -32.77579 -32.64357 -29.24722 -27.62299 -27.52374 -26.96217 -25.35068 -24.90239 -23.49650 -22.71175 -21.63523 -20.38369 -19.89958 -19.32576 -18.27593 -17.12567 -16.41499 -16.31490 -16.18249 -15.85678 -15.33940 -15.06323 -14.68837 -14.59977 -14.42508 -14.21628 -13.78119 -13.57750 -13.27788 -13.19390 -12.69501 -12.47098 -12.20254 -12.11227 -12.05593 -12.03186 -11.84822 -11.78330 -11.72857 -11.47540 -11.18624 -11.17673 -10.99464 -10.81379 -10.51885 -10.45483 -10.38335 -10.19195 -9.95581 -9.60289 -9.23588 -9.16168 -9.04173 -8.38939 -7.73736 -5.99734 -4.00360 1.99346 2.76455 3.26538 3.34796 3.40023 3.44939 3.83557 3.90778 4.44459 4.46581 4.52843 4.57168 4.66230 4.71683 4.73418 4.93722 5.10136 5.24887 5.25984 5.35096 5.35786 5.36134 5.38771 5.43949 5.46678 5.51006 5.61393 5.62334 5.67632 5.69389 5.79504 5.83174 5.93380 6.03079 6.05772 6.16269 6.22771 6.30752 6.33644 6.44226 6.47056 6.73852 7.22070 7.33964 7.53373 7.72325 7.92812 8.17586 8.33183 8.52894 9.07659 9.63469 11.11496 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.002752 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.991597 B =10171.906641 C =11200.001140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.659 3.341 7 O -0.565 6.565 8 N -0.672 5.672 9 C 0.126 3.874 10 C 0.084 3.916 11 O -0.342 6.342 12 C 0.057 3.943 13 C -0.008 4.008 14 N -0.454 5.454 15 C 0.156 3.844 16 C -0.501 4.501 17 H 0.063 0.937 18 C 0.052 3.948 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.005 4.005 25 C -0.159 4.159 26 C -0.169 4.169 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.409 0.591 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.002 0.998 44 H 0.261 0.739 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.325 12.256 2.907 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.412 3.588 7 O -0.454 6.454 8 N -0.330 5.330 9 C 0.039 3.961 10 C 0.006 3.994 11 O -0.260 6.260 12 C -0.002 4.002 13 C -0.137 4.137 14 N -0.177 5.177 15 C 0.029 3.971 16 C -0.539 4.539 17 H 0.081 0.919 18 C -0.148 4.148 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.135 4.135 25 C -0.196 4.196 26 C -0.208 4.208 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.020 0.980 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.131 0.869 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.107 12.446 3.044 26.421 hybrid contribution 0.804 -0.680 -0.111 1.058 sum -22.303 11.767 2.932 25.386 Atomic orbital electron populations 1.22509 0.94186 1.04869 1.02400 1.22051 0.94095 0.91508 0.82283 1.21868 1.02552 0.92516 1.02910 1.22529 1.01982 1.03535 0.96099 1.86305 1.70720 1.24269 1.46658 1.17965 0.78157 0.80340 0.82297 1.90857 1.42449 1.69434 1.42673 1.43826 1.61532 1.08521 1.19079 1.20311 1.00546 0.79520 0.95754 1.22274 0.82822 0.96605 0.97690 1.87985 1.17892 1.71575 1.48570 1.23293 0.93668 0.94408 0.88825 1.24042 0.92597 1.01063 0.96028 1.69025 1.01926 1.13006 1.33716 1.20297 0.87298 0.94558 0.94909 1.21114 1.00115 1.39039 0.93660 0.91863 1.25014 0.98047 0.96171 0.95598 1.69960 1.20964 1.46514 1.16764 0.86472 0.80539 0.78352 0.81920 1.20626 1.19827 1.21336 1.24201 0.92485 0.94886 1.01946 1.23398 1.00125 1.03105 0.92996 1.23444 0.90852 1.03801 1.02654 0.92380 0.91156 0.89463 0.91267 0.90186 0.91618 0.89193 0.91357 0.91895 0.75578 0.91107 0.92260 0.91195 0.90403 0.91388 0.95420 0.98015 0.92981 0.91292 0.90303 0.86929 0.87876 0.88080 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 8.42 37.16 0.31 -1.37 16 2 C 0.14 1.41 1.13 -90.61 -0.10 1.31 16 3 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 4 C -0.18 -1.99 8.38 37.16 0.31 -1.68 16 5 O -0.36 -4.53 9.94 -40.32 -0.40 -4.93 16 6 C 0.66 8.70 7.83 54.06 0.42 9.13 16 7 O -0.57 -8.23 10.35 -19.28 -0.20 -8.43 16 8 N -0.67 -7.85 5.48 -52.47 -0.29 -8.14 16 9 C 0.13 1.41 2.11 -131.82 -0.28 1.13 16 10 C 0.08 1.10 5.42 37.16 0.20 1.30 16 11 O -0.34 -5.71 10.38 -35.23 -0.37 -6.07 16 12 C 0.06 0.96 4.67 -26.20 -0.12 0.84 16 13 C -0.01 -0.15 7.52 -7.54 -0.06 -0.21 16 14 N -0.45 -10.56 6.32 -246.09 -1.55 -12.11 16 15 C 0.16 4.23 4.57 -4.97 -0.02 4.21 16 16 C -0.50 -14.77 9.39 -34.44 -0.32 -15.09 16 17 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 20 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C -0.01 -0.11 7.55 -7.55 -0.06 -0.16 16 25 C -0.16 -1.39 10.16 -26.69 -0.27 -1.66 16 26 C -0.17 -1.44 10.17 -26.69 -0.27 -1.72 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.09 0.99 5.83 -51.93 -0.30 0.69 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.17 5.83 -51.93 -0.30 0.87 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.41 4.09 8.93 -40.82 -0.36 3.73 16 37 H 0.07 1.00 6.63 -51.93 -0.34 0.66 16 38 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 39 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 42 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 46 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 47 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -33.90 404.12 -9.81 -43.70 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.78 Total: 2.67 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.02 Total: -3.32 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -1.11 Total: -46.96 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.97 Total: -19.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.90 -9.81 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224796664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.243 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds