Wall clock time and date at job start Tue Mar 31 2020 14:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53007 * 109.47120 * 240.00490 * 2 1 3 5 5 O 1.45191 * 109.47344 * 120.00426 * 2 1 3 6 6 C 1.34637 * 116.99818 * 59.27553 * 5 2 1 7 7 O 1.21512 * 120.00346 * 3.00834 * 6 5 2 8 8 N 1.34777 * 120.00031 * 183.01633 * 6 5 2 9 9 C 1.46497 * 120.00162 * 184.62328 * 8 6 5 10 10 C 1.53003 * 115.54899 * 56.55098 * 9 8 6 11 11 O 1.42903 * 109.47262 * 58.77931 * 10 9 8 12 12 C 1.42892 * 114.00079 * 184.94704 * 11 10 9 13 13 C 1.53517 * 114.16983 * 145.72440 * 12 11 10 14 14 N 1.47486 * 87.93001 * 87.62398 * 13 12 11 15 15 C 1.46899 * 110.99760 * 138.70403 * 14 13 12 16 16 C 1.50704 * 109.46966 * 169.99992 * 15 14 13 17 17 H 1.07994 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99995 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00246 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00216 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46812 * 270.00306 * 20 18 16 22 22 H 1.48493 * 109.46724 * 30.00073 * 20 18 16 23 23 H 1.48493 * 109.47097 * 150.00020 * 20 18 16 24 24 C 1.47476 * 87.83566 * 27.01259 * 14 13 12 25 25 C 1.52999 * 117.49975 * 202.22094 * 9 8 6 26 26 C 1.53002 * 117.50042 * 270.88026 * 9 8 6 27 27 H 1.08997 * 109.46743 * 304.62260 * 1 2 3 28 28 H 1.09007 * 109.46761 * 64.62403 * 1 2 3 29 29 H 1.09004 * 109.47102 * 184.62026 * 1 2 3 30 30 H 1.08995 * 109.47276 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47643 * 300.00366 * 3 2 1 32 32 H 1.09006 * 109.46776 * 60.00388 * 3 2 1 33 33 H 1.09000 * 109.47206 * 300.00293 * 4 2 1 34 34 H 1.09002 * 109.46964 * 60.00097 * 4 2 1 35 35 H 1.08995 * 109.47036 * 179.97438 * 4 2 1 36 36 H 0.97003 * 119.99925 * 4.61901 * 8 6 5 37 37 H 1.08997 * 109.47527 * 298.77737 * 10 9 8 38 38 H 1.08998 * 109.47299 * 178.77557 * 10 9 8 39 39 H 1.09001 * 113.38753 * 12.64766 * 12 11 10 40 40 H 1.08998 * 113.47811 * 332.86136 * 13 12 11 41 41 H 1.09000 * 113.47512 * 202.38929 * 13 12 11 42 42 H 1.09003 * 109.47476 * 49.99920 * 15 14 13 43 43 H 1.09006 * 109.47003 * 289.99907 * 15 14 13 44 44 H 0.96997 * 120.00536 * 179.97438 * 19 18 16 45 45 H 1.09004 * 113.48124 * 87.75340 * 24 14 13 46 46 H 1.09005 * 113.47700 * 218.22037 * 24 14 13 47 47 H 1.09013 * 117.50033 * 215.00565 * 25 9 8 48 48 H 1.09001 * 117.50259 * 0.02562 * 25 9 8 49 49 H 1.08995 * 117.49746 * 359.97438 * 26 9 8 50 50 H 1.09007 * 117.49826 * 144.97303 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6399 -1.9679 1.3457 7 8 0.9739 -2.5179 0.4910 8 7 2.0040 -2.6426 2.4542 9 6 1.6845 -4.0664 2.5832 10 6 2.2120 -4.9652 1.4629 11 8 3.6350 -4.8540 1.3931 12 6 4.2212 -5.5698 0.3041 13 6 5.4568 -4.8900 -0.3023 14 7 6.2727 -5.5964 0.7029 15 6 7.5163 -6.1046 0.1088 16 6 8.4295 -6.5988 1.2011 17 1 8.1170 -6.5415 2.2332 18 6 9.6634 -7.1251 0.8825 19 7 10.0437 -7.1954 -0.3745 20 14 10.7956 -7.7371 2.2364 21 1 11.6652 -6.6241 2.6951 22 1 9.9821 -8.2316 3.3760 23 1 11.6395 -8.8418 1.7143 24 6 5.2335 -6.6426 0.7294 25 6 1.6329 -4.6538 3.9950 26 6 0.3377 -4.4344 3.2091 27 1 -0.3633 0.5839 0.8457 28 1 -0.3633 0.4404 -0.9286 29 1 -0.3633 -1.0244 0.0828 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9565 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2495 34 1 1.6767 -0.2072 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 2.4777 -2.1853 3.1666 37 1 1.7763 -4.6555 0.5130 38 1 1.9381 -6.0001 1.6680 39 1 3.4928 -5.9103 -0.4319 40 1 5.4601 -3.8068 -0.1808 41 1 5.6646 -5.2007 -1.3263 42 1 8.0094 -5.3039 -0.4425 43 1 7.2855 -6.9250 -0.5708 44 1 10.9119 -7.5653 -0.5986 45 1 5.3817 -7.4209 -0.0192 46 1 5.0475 -7.0448 1.7253 47 1 1.9748 -5.6807 4.1257 48 1 1.8362 -3.9808 4.8279 49 1 -0.3103 -3.6171 3.5253 50 1 -0.1727 -5.3166 2.8225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224796664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:56 Heat of formation + Delta-G solvation = -80.315691 kcal Electronic energy + Delta-G solvation = -28914.342765 eV Core-core repulsion = 24943.435375 eV Total energy + Delta-G solvation = -3970.907389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84318 -41.07850 -39.69395 -37.66857 -37.03769 -35.22704 -34.96937 -33.49055 -31.16115 -28.34207 -28.29495 -28.14597 -27.05168 -26.68161 -24.37454 -23.63944 -23.37281 -21.22015 -20.88488 -20.78838 -19.18131 -18.60727 -18.12311 -17.36136 -17.19560 -17.07564 -16.84316 -16.29506 -16.11574 -15.68769 -15.50841 -15.22831 -15.20989 -14.96883 -14.53486 -14.32535 -13.98869 -13.64802 -13.37838 -13.29077 -13.12969 -13.01684 -12.88895 -12.84284 -12.75295 -12.55505 -12.51519 -12.41196 -12.33694 -12.28685 -11.98271 -11.93840 -11.52110 -11.36496 -11.28324 -11.26601 -10.93740 -10.63465 -10.37375 -10.04262 -9.57920 -8.24239 -6.34776 1.15108 1.38375 1.40661 1.52226 1.80594 2.27593 2.38578 2.91306 3.07445 3.10262 3.38478 3.43561 3.71305 3.77440 3.82152 3.89610 3.93488 3.97087 4.01346 4.31666 4.39674 4.45414 4.55238 4.59402 4.63042 4.63586 4.67865 4.71152 4.75100 4.78484 4.78949 4.83271 4.87639 4.89580 4.97472 4.99333 5.02991 5.12349 5.19333 5.30662 5.31472 5.44674 5.56674 5.62474 5.77909 6.07550 6.28665 6.44086 6.47246 6.79434 7.34800 7.40016 8.87048 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.002752 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.991597 B =10171.906641 C =11200.001140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.126 3.874 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.375 6.375 6 C 0.651 3.349 7 O -0.583 6.583 8 N -0.669 5.669 9 C 0.093 3.907 10 C 0.082 3.918 11 O -0.361 6.361 12 C 0.083 3.917 13 C -0.011 4.011 14 N -0.480 5.480 15 C 0.172 3.828 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.265 1.265 23 H -0.277 1.277 24 C -0.007 4.007 25 C -0.146 4.146 26 C -0.151 4.151 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.414 0.586 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.075 0.925 42 H -0.003 1.003 43 H -0.016 1.016 44 H 0.266 0.734 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.107 0.893 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.558 12.446 4.171 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.090 3.910 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.290 6.290 6 C 0.405 3.595 7 O -0.473 6.473 8 N -0.327 5.327 9 C 0.006 3.994 10 C 0.005 3.995 11 O -0.279 6.279 12 C 0.024 3.976 13 C -0.140 4.140 14 N -0.202 5.202 15 C 0.045 3.955 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.189 1.189 23 H -0.203 1.203 24 C -0.136 4.136 25 C -0.184 4.184 26 C -0.189 4.189 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.015 0.985 43 H 0.002 0.998 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.125 0.875 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.359 12.649 4.321 27.785 hybrid contribution 1.126 -0.696 -0.538 1.429 sum -23.233 11.953 3.784 26.400 Atomic orbital electron populations 1.22436 0.93308 1.03692 1.03814 1.22382 0.94931 0.92442 0.81283 1.21895 1.02116 0.90955 1.04440 1.22488 1.01113 1.02532 0.97673 1.86312 1.70948 1.24047 1.47646 1.18185 0.78170 0.80583 0.82532 1.90841 1.43306 1.69844 1.43348 1.43892 1.61189 1.08804 1.18791 1.20481 1.03159 0.78992 0.96721 1.22445 0.80620 0.98330 0.98110 1.87964 1.20230 1.71447 1.48269 1.23031 0.93306 0.92172 0.89114 1.24098 0.93438 1.00683 0.95817 1.68950 1.01563 1.14889 1.34831 1.19971 0.88932 0.92741 0.93901 1.21397 1.01279 1.39955 0.93764 0.92597 1.25955 0.99573 0.95947 0.98235 1.70075 1.21649 1.46891 1.18870 0.85340 0.78232 0.78048 0.78756 1.19826 1.18930 1.20253 1.24236 0.92200 0.94993 1.02185 1.23504 0.99685 1.03334 0.91838 1.23510 0.90139 1.04213 1.01062 0.91511 0.89234 0.91770 0.91972 0.87884 0.90847 0.91659 0.89102 0.93116 0.74943 0.92399 0.90189 0.87974 0.90857 0.90733 0.98466 0.99818 0.92533 0.91119 0.90247 0.86505 0.86581 0.87471 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.42 71.98 0.61 -2.45 16 2 C 0.13 2.50 1.13 -10.79 -0.01 2.49 16 3 C -0.14 -1.93 8.85 71.98 0.64 -1.29 16 4 C -0.18 -3.90 8.38 71.98 0.60 -3.29 16 5 O -0.37 -9.30 9.94 -55.46 -0.55 -9.85 16 6 C 0.65 17.22 7.83 129.79 1.02 18.24 16 7 O -0.58 -17.13 10.35 19.80 0.21 -16.93 16 8 N -0.67 -15.27 5.48 -550.32 -3.02 -18.29 16 9 C 0.09 1.96 2.11 3.61 0.01 1.97 16 10 C 0.08 2.05 5.42 71.98 0.39 2.44 16 11 O -0.36 -11.75 10.38 -148.98 -1.55 -13.30 16 12 C 0.08 2.73 4.67 30.94 0.14 2.87 16 13 C -0.01 -0.43 7.52 83.58 0.63 0.20 16 14 N -0.48 -22.78 6.32 -932.88 -5.89 -28.67 16 15 C 0.17 9.66 4.57 85.56 0.39 10.06 16 16 C -0.53 -31.64 9.39 25.60 0.24 -31.40 16 17 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.01 -0.26 7.55 83.58 0.63 0.37 16 25 C -0.15 -2.23 10.16 30.62 0.31 -1.92 16 26 C -0.15 -2.24 10.17 30.62 0.31 -1.93 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.06 1.45 5.83 -2.39 -0.01 1.43 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 1.75 5.83 -2.39 -0.01 1.73 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.41 8.10 8.93 -92.71 -0.83 7.27 16 37 H 0.06 1.60 6.63 -2.39 -0.02 1.58 16 38 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 39 H 0.10 2.75 7.84 -2.39 -0.02 2.74 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.07 2.81 7.91 -2.39 -0.02 2.79 16 42 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 43 H -0.02 -0.93 7.30 -2.38 -0.02 -0.95 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.07 2.74 7.42 -2.38 -0.02 2.72 16 46 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 47 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -74.47 404.12 -2.03 -76.50 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.09 Total: 23.30 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 6.37 Total: -3.14 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -8.62 Total: -104.30 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.89 Total: -40.07 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.47 -2.03 -76.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224796664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.815 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds