Wall clock time and date at job start Tue Mar 31 2020 14:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 C 1.52993 * 109.47455 * 239.99773 * 2 1 3 5 5 O 1.45208 * 109.47209 * 119.99578 * 2 1 3 6 6 C 1.34634 * 116.99817 * 60.00075 * 5 2 1 7 7 O 1.21513 * 119.99817 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99987 * 180.02562 * 6 5 2 9 9 C 1.47805 * 134.45584 * 359.86511 * 8 6 5 10 10 C 1.53950 * 86.03824 * 204.64698 * 9 8 6 11 11 C 1.47582 * 134.48994 * 180.02562 * 8 6 5 12 12 H 1.09004 * 113.76624 * 269.64983 * 11 8 6 13 13 C 1.52996 * 113.77274 * 41.05497 * 11 8 6 14 14 O 1.42895 * 109.47161 * 271.49339 * 13 11 8 15 15 C 1.42897 * 114.00145 * 179.97438 * 14 13 11 16 16 C 1.53938 * 113.73633 * 248.76609 * 15 14 13 17 17 N 1.48182 * 86.10312 * 221.95796 * 16 15 14 18 18 C 1.46904 * 111.07160 * 137.52139 * 17 16 15 19 19 C 1.50699 * 109.47259 * 70.56710 * 18 17 16 20 20 H 1.07997 * 120.00078 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99932 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00200 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99741 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47429 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47033 * 119.99839 * 23 21 19 26 26 H 1.48505 * 109.47015 * 239.99354 * 23 21 19 27 27 C 1.47963 * 90.79939 * 24.59797 * 17 16 15 28 28 H 1.08997 * 109.47417 * 299.99921 * 1 2 3 29 29 H 1.08998 * 109.47221 * 60.00475 * 1 2 3 30 30 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47095 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46702 * 299.99843 * 3 2 1 33 33 H 1.08997 * 109.46927 * 59.99779 * 3 2 1 34 34 H 1.09002 * 109.47147 * 299.99775 * 4 2 1 35 35 H 1.08994 * 109.47532 * 59.99935 * 4 2 1 36 36 H 1.09004 * 109.47169 * 180.02562 * 4 2 1 37 37 H 1.08999 * 113.77157 * 90.38364 * 9 8 6 38 38 H 1.09002 * 113.84143 * 318.91627 * 9 8 6 39 39 H 1.09002 * 113.74409 * 222.08469 * 10 9 8 40 40 H 1.09006 * 113.74165 * 90.87920 * 10 9 8 41 41 H 1.09005 * 109.46885 * 31.49057 * 13 11 8 42 42 H 1.08995 * 109.47317 * 151.48965 * 13 11 8 43 43 H 1.09005 * 112.93924 * 20.33408 * 15 14 13 44 44 H 1.09001 * 113.75925 * 336.24180 * 16 15 14 45 45 H 1.08997 * 113.76241 * 107.60149 * 16 15 14 46 46 H 1.09006 * 109.46867 * 190.56912 * 18 17 16 47 47 H 1.08998 * 109.46948 * 310.56230 * 18 17 16 48 48 H 0.97002 * 120.00322 * 180.02562 * 22 21 19 49 49 H 1.09003 * 113.75928 * 221.08048 * 27 17 16 50 50 H 1.09000 * 113.85780 * 89.73552 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6653 2.4174 9 6 2.9028 -2.3463 3.5941 10 6 3.1928 -3.8566 3.6639 11 6 1.8722 -4.0475 2.8964 12 1 1.0026 -4.1700 3.5422 13 6 1.9493 -5.1006 1.7893 14 8 0.6529 -5.2866 1.2177 15 6 0.6141 -6.2548 0.1675 16 6 0.3488 -5.6502 -1.2232 17 7 -0.5556 -6.8037 -1.4406 18 6 -1.8006 -6.3823 -2.0967 19 6 -1.5119 -6.0046 -3.5267 20 1 -0.5043 -6.0705 -3.9097 21 6 -2.5339 -5.5738 -4.3458 22 7 -3.7609 -5.4931 -3.8792 23 14 -2.1759 -5.1050 -6.1181 24 1 -0.7276 -5.2823 -6.3942 25 1 -2.9639 -5.9738 -7.0289 26 1 -2.5516 -3.6855 -6.3402 27 6 -0.7495 -6.9532 0.0187 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1300 -0.7216 -1.2488 37 1 2.3368 -1.9678 4.4452 38 1 3.7790 -1.7410 3.3612 39 1 3.1747 -4.2606 4.6762 40 1 4.0753 -4.1605 3.1008 41 1 2.6422 -4.7660 1.0172 42 1 2.3002 -6.0435 2.2085 43 1 1.4591 -6.9430 0.1927 44 1 -0.1645 -4.6891 -1.1936 45 1 1.2227 -5.6470 -1.8746 46 1 -2.5182 -7.2026 -2.0753 47 1 -2.2157 -5.5228 -1.5705 48 1 -4.4800 -5.1904 -4.4556 49 1 -0.7517 -7.9892 0.3576 50 1 -1.5846 -6.3749 0.4140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225054564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:57 Heat of formation + Delta-G solvation = -47.680824 kcal Electronic energy + Delta-G solvation = -29534.533164 eV Core-core repulsion = 25565.040929 eV Total energy + Delta-G solvation = -3969.492235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84941 -39.51235 -38.98049 -36.36872 -36.11468 -33.97965 -32.72548 -30.11598 -29.30904 -28.22499 -27.43614 -27.31696 -25.42273 -24.74483 -23.46552 -23.11593 -21.39547 -20.77543 -19.25325 -18.98121 -17.83291 -16.85972 -16.64502 -16.34946 -16.09163 -15.57288 -15.43135 -14.93517 -14.67180 -14.26001 -14.19839 -14.04100 -13.67068 -13.38966 -12.88065 -12.83228 -12.58997 -12.53472 -12.20911 -12.09251 -11.87525 -11.87354 -11.85405 -11.79888 -11.73047 -11.34404 -11.25801 -11.17204 -10.97532 -10.92232 -10.76703 -10.49549 -10.29324 -10.14221 -9.76689 -9.51906 -9.04404 -8.97077 -8.85679 -8.40111 -7.66599 -5.95975 -3.96835 1.93954 3.00766 3.35539 3.41991 3.47909 3.58738 3.81260 4.13571 4.49696 4.64103 4.71293 4.74730 4.84830 4.90343 4.95629 4.98608 5.03582 5.09525 5.17355 5.28118 5.32358 5.38887 5.41067 5.41987 5.50791 5.53640 5.60383 5.70880 5.71935 5.77685 5.88802 5.93141 6.01627 6.07015 6.27862 6.33829 6.38925 6.43010 6.57528 6.66458 6.71977 6.83803 7.38517 7.63200 7.67631 7.73792 7.98749 8.23478 8.50011 8.53224 9.10297 9.66747 11.15608 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003924 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.070358 B = 7133.708031 C = 9257.837043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.369 6.369 6 C 0.662 3.338 7 O -0.530 6.530 8 N -0.634 5.634 9 C 0.107 3.893 10 C -0.147 4.147 11 C 0.165 3.835 12 H 0.103 0.897 13 C 0.060 3.940 14 O -0.360 6.360 15 C 0.055 3.945 16 C 0.014 3.986 17 N -0.479 5.479 18 C 0.164 3.836 19 C -0.505 4.505 20 H 0.061 0.939 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.003 3.997 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.031 0.969 47 H 0.000 1.000 48 H 0.260 0.740 49 H 0.079 0.921 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.601 9.781 17.984 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.101 3.899 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.285 6.285 6 C 0.418 3.582 7 O -0.416 6.416 8 N -0.379 5.379 9 C -0.015 4.015 10 C -0.185 4.185 11 C 0.064 3.936 12 H 0.121 0.879 13 C -0.017 4.017 14 O -0.278 6.278 15 C -0.003 4.003 16 C -0.115 4.115 17 N -0.204 5.204 18 C 0.038 3.962 19 C -0.544 4.544 20 H 0.079 0.921 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.018 0.982 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.135 9.401 17.055 25.291 hybrid contribution -0.283 1.002 -0.782 1.302 sum 15.852 10.403 16.273 24.987 Atomic orbital electron populations 1.22514 0.93839 1.05584 1.02180 1.22040 0.94469 0.91190 0.82191 1.21843 1.01912 0.92829 1.02944 1.22520 1.01052 1.04122 0.96423 1.86255 1.72016 1.23757 1.46448 1.17651 0.78512 0.80177 0.81856 1.91068 1.38986 1.69602 1.41925 1.48936 1.54679 1.13642 1.20609 1.23130 0.94194 0.96770 0.87435 1.23612 0.97454 0.95950 1.01438 1.22855 0.98287 0.79344 0.93129 0.87899 1.22600 0.87556 0.96724 0.94868 1.88059 1.27277 1.60695 1.51784 1.24341 0.98262 0.90356 0.87378 1.24138 0.98113 0.95786 0.93487 1.68540 1.14824 1.30587 1.06461 1.20172 0.86556 0.94949 0.94529 1.21131 0.94755 1.43112 0.95408 0.92060 1.24977 0.94992 0.95808 0.98777 1.69974 0.99891 1.47814 1.36110 0.86455 0.78407 0.77959 0.84702 1.19691 1.20997 1.21088 1.24107 0.95866 0.99713 0.92935 0.92552 0.91100 0.88945 0.91739 0.90171 0.91747 0.88903 0.91110 0.92547 0.89664 0.89775 0.88862 0.88534 0.92844 0.92236 0.89985 0.90205 0.91112 0.95102 0.98181 0.93042 0.90301 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.37 37.15 0.31 -2.20 16 2 C 0.14 1.75 1.13 -90.62 -0.10 1.65 16 3 C -0.14 -1.28 8.85 37.16 0.33 -0.95 16 4 C -0.18 -2.48 8.37 37.15 0.31 -2.17 16 5 O -0.37 -5.13 9.87 -40.31 -0.40 -5.53 16 6 C 0.66 10.20 8.12 54.05 0.44 10.64 16 7 O -0.53 -10.02 11.43 -22.16 -0.25 -10.28 16 8 N -0.63 -7.63 3.49 -176.78 -0.62 -8.25 16 9 C 0.11 0.77 8.89 -2.84 -0.03 0.75 16 10 C -0.15 -0.86 7.85 -25.81 -0.20 -1.06 16 11 C 0.17 1.70 4.54 -66.86 -0.30 1.39 16 12 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.06 0.76 5.21 37.16 0.19 0.95 16 14 O -0.36 -6.20 9.69 -39.18 -0.38 -6.58 16 15 C 0.05 0.99 4.48 -25.80 -0.12 0.87 16 16 C 0.01 0.31 7.32 -2.63 -0.02 0.29 16 17 N -0.48 -11.44 6.25 -239.75 -1.50 -12.94 16 18 C 0.16 4.64 4.58 -4.97 -0.02 4.62 16 19 C -0.51 -15.20 8.84 -34.44 -0.30 -15.51 16 20 H 0.06 1.84 7.80 -52.49 -0.41 1.43 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -27.98 13.29 55.43 0.74 -27.24 16 23 Si 0.90 22.69 29.54 -169.99 -5.02 17.67 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.00 0.06 7.81 -2.76 -0.02 0.04 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.59 5.88 -51.93 -0.31 1.29 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 44 H 0.08 2.00 7.79 -51.93 -0.40 1.60 16 45 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.00 0.01 7.70 -51.93 -0.40 -0.39 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 50 H 0.07 1.45 7.80 -51.93 -0.40 1.05 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -35.89 402.11 -9.96 -45.85 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.96 Total: 0.37 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 0.37 Total: 0.88 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.38 Total: -48.44 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -1.03 Total: -22.39 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.89 -9.96 -45.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225054564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.829 kcal (2) G-P(sol) polarization free energy of solvation -35.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds