Wall clock time and date at job start Tue Mar 31 2020 14:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 C 1.52993 * 109.47455 * 239.99773 * 2 1 3 5 5 O 1.45208 * 109.47209 * 119.99578 * 2 1 3 6 6 C 1.34634 * 116.99817 * 60.00075 * 5 2 1 7 7 O 1.21513 * 119.99817 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99987 * 180.02562 * 6 5 2 9 9 C 1.47805 * 134.45584 * 359.86511 * 8 6 5 10 10 C 1.53950 * 86.03824 * 204.64698 * 9 8 6 11 11 C 1.47582 * 134.48994 * 180.02562 * 8 6 5 12 12 H 1.09004 * 113.76624 * 269.64983 * 11 8 6 13 13 C 1.52996 * 113.77274 * 41.05497 * 11 8 6 14 14 O 1.42895 * 109.47161 * 271.49339 * 13 11 8 15 15 C 1.42897 * 114.00145 * 179.97438 * 14 13 11 16 16 C 1.53938 * 113.73633 * 248.76609 * 15 14 13 17 17 N 1.48182 * 86.10312 * 221.95796 * 16 15 14 18 18 C 1.46904 * 111.07160 * 137.52139 * 17 16 15 19 19 C 1.50699 * 109.47259 * 70.56710 * 18 17 16 20 20 H 1.07997 * 120.00078 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99932 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00200 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99741 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47429 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47033 * 119.99839 * 23 21 19 26 26 H 1.48505 * 109.47015 * 239.99354 * 23 21 19 27 27 C 1.47963 * 90.79939 * 24.59797 * 17 16 15 28 28 H 1.08997 * 109.47417 * 299.99921 * 1 2 3 29 29 H 1.08998 * 109.47221 * 60.00475 * 1 2 3 30 30 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47095 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46702 * 299.99843 * 3 2 1 33 33 H 1.08997 * 109.46927 * 59.99779 * 3 2 1 34 34 H 1.09002 * 109.47147 * 299.99775 * 4 2 1 35 35 H 1.08994 * 109.47532 * 59.99935 * 4 2 1 36 36 H 1.09004 * 109.47169 * 180.02562 * 4 2 1 37 37 H 1.08999 * 113.77157 * 90.38364 * 9 8 6 38 38 H 1.09002 * 113.84143 * 318.91627 * 9 8 6 39 39 H 1.09002 * 113.74409 * 222.08469 * 10 9 8 40 40 H 1.09006 * 113.74165 * 90.87920 * 10 9 8 41 41 H 1.09005 * 109.46885 * 31.49057 * 13 11 8 42 42 H 1.08995 * 109.47317 * 151.48965 * 13 11 8 43 43 H 1.09005 * 112.93924 * 20.33408 * 15 14 13 44 44 H 1.09001 * 113.75925 * 336.24180 * 16 15 14 45 45 H 1.08997 * 113.76241 * 107.60149 * 16 15 14 46 46 H 1.09006 * 109.46867 * 190.56912 * 18 17 16 47 47 H 1.08998 * 109.46948 * 310.56230 * 18 17 16 48 48 H 0.97002 * 120.00322 * 180.02562 * 22 21 19 49 49 H 1.09003 * 113.75928 * 221.08048 * 27 17 16 50 50 H 1.09000 * 113.85780 * 89.73552 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6653 2.4174 9 6 2.9028 -2.3463 3.5941 10 6 3.1928 -3.8566 3.6639 11 6 1.8722 -4.0475 2.8964 12 1 1.0026 -4.1700 3.5422 13 6 1.9493 -5.1006 1.7893 14 8 0.6529 -5.2866 1.2177 15 6 0.6141 -6.2548 0.1675 16 6 0.3488 -5.6502 -1.2232 17 7 -0.5556 -6.8037 -1.4406 18 6 -1.8006 -6.3823 -2.0967 19 6 -1.5119 -6.0046 -3.5267 20 1 -0.5043 -6.0705 -3.9097 21 6 -2.5339 -5.5738 -4.3458 22 7 -3.7609 -5.4931 -3.8792 23 14 -2.1759 -5.1050 -6.1181 24 1 -0.7276 -5.2823 -6.3942 25 1 -2.9639 -5.9738 -7.0289 26 1 -2.5516 -3.6855 -6.3402 27 6 -0.7495 -6.9532 0.0187 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1300 -0.7216 -1.2488 37 1 2.3368 -1.9678 4.4452 38 1 3.7790 -1.7410 3.3612 39 1 3.1747 -4.2606 4.6762 40 1 4.0753 -4.1605 3.1008 41 1 2.6422 -4.7660 1.0172 42 1 2.3002 -6.0435 2.2085 43 1 1.4591 -6.9430 0.1927 44 1 -0.1645 -4.6891 -1.1936 45 1 1.2227 -5.6470 -1.8746 46 1 -2.5182 -7.2026 -2.0753 47 1 -2.2157 -5.5228 -1.5705 48 1 -4.4800 -5.1904 -4.4556 49 1 -0.7517 -7.9892 0.3576 50 1 -1.5846 -6.3749 0.4140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225054564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:56 Heat of formation + Delta-G solvation = -74.626106 kcal Electronic energy + Delta-G solvation = -29535.701599 eV Core-core repulsion = 25565.040929 eV Total energy + Delta-G solvation = -3970.660670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83953 -40.87260 -40.19115 -37.61797 -37.41541 -35.05328 -34.97478 -31.38199 -30.73569 -29.42347 -28.43148 -28.31707 -27.28408 -26.67104 -24.41066 -23.94462 -23.35827 -21.67138 -20.85855 -20.05595 -18.81733 -18.64051 -18.04045 -17.69842 -17.37791 -16.90446 -16.64199 -16.32592 -16.10749 -15.88937 -15.33204 -15.26308 -15.01062 -14.72822 -14.23029 -14.03855 -13.90977 -13.68570 -13.51232 -13.33380 -13.32433 -13.12757 -12.93724 -12.91406 -12.87198 -12.67624 -12.63264 -12.57594 -12.33094 -12.24183 -12.20000 -12.06279 -11.86357 -11.45758 -11.37921 -11.20066 -10.91144 -10.70875 -10.40026 -9.76350 -9.69257 -8.28716 -6.40100 1.02320 1.33465 1.35503 1.49418 1.89984 2.34063 2.58631 2.84245 3.03744 3.26957 3.47232 3.56937 3.72908 3.75706 3.87471 3.90967 4.01025 4.08533 4.17595 4.25018 4.38364 4.47297 4.50964 4.54301 4.54818 4.59508 4.66015 4.67180 4.69436 4.74701 4.77734 4.78141 4.84822 4.85521 4.92729 4.99740 5.02954 5.10303 5.11841 5.23173 5.31865 5.32505 5.44242 5.55840 5.69451 6.04312 6.30830 6.36689 6.70577 6.73686 7.29400 7.40734 8.83965 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003924 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.070358 B = 7133.708031 C = 9257.837043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.131 3.869 3 C -0.130 4.130 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.578 6.578 8 N -0.643 5.643 9 C 0.105 3.895 10 C -0.116 4.116 11 C 0.150 3.850 12 H 0.105 0.895 13 C 0.053 3.947 14 O -0.383 6.383 15 C 0.086 3.914 16 C 0.009 3.991 17 N -0.487 5.487 18 C 0.182 3.818 19 C -0.531 4.531 20 H 0.058 0.942 21 C 0.001 3.999 22 N -0.933 5.933 23 Si 0.974 3.026 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.276 1.276 27 C 0.001 3.999 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.098 0.902 43 H 0.120 0.880 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.007 0.993 47 H -0.038 1.038 48 H 0.266 0.734 49 H 0.113 0.887 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.395 10.220 19.293 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.095 3.905 3 C -0.187 4.187 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.405 3.595 7 O -0.467 6.467 8 N -0.388 5.388 9 C -0.016 4.016 10 C -0.154 4.154 11 C 0.049 3.951 12 H 0.122 0.878 13 C -0.024 4.024 14 O -0.301 6.301 15 C 0.027 3.973 16 C -0.120 4.120 17 N -0.211 5.211 18 C 0.055 3.945 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.197 4.197 22 N -0.574 5.574 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.202 1.202 27 C -0.128 4.128 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.149 0.851 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.055 0.945 45 H 0.093 0.907 46 H 0.025 0.975 47 H -0.020 1.020 48 H 0.075 0.925 49 H 0.131 0.869 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.969 9.839 18.426 28.216 hybrid contribution -1.149 0.879 -1.080 1.805 sum 17.820 10.718 17.346 27.080 Atomic orbital electron populations 1.22449 0.95108 1.02956 1.03204 1.22261 0.93677 0.93019 0.81583 1.21839 1.02578 0.90013 1.04239 1.22449 1.01671 1.01915 0.97627 1.86261 1.71888 1.23248 1.46791 1.18100 0.78338 0.80484 0.82580 1.91061 1.41153 1.70518 1.44008 1.49409 1.54254 1.14403 1.20720 1.23489 0.93965 0.98277 0.85849 1.23561 0.94737 0.94439 1.02650 1.23222 1.01192 0.77897 0.92759 0.87762 1.22946 0.85039 0.99356 0.95063 1.88044 1.30437 1.60441 1.51163 1.23989 0.98110 0.89914 0.85250 1.24049 0.97256 0.93494 0.97234 1.68436 1.12796 1.30809 1.09051 1.19796 0.87965 0.92394 0.94369 1.21402 0.94870 1.44162 0.96438 0.92409 1.25991 0.94556 0.95163 1.03990 1.70100 1.00991 1.48089 1.38180 0.85274 0.78732 0.78005 0.78266 1.18826 1.19495 1.20163 1.24178 0.96667 1.01701 0.90207 0.91585 0.89947 0.93304 0.90619 0.88517 0.90810 0.93039 0.90028 0.91348 0.87823 0.88729 0.85085 0.87674 0.94377 0.88467 0.86238 0.94497 0.90748 0.97517 1.02010 0.92479 0.86929 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.20 8.37 71.98 0.60 -4.59 16 2 C 0.13 3.38 1.13 -10.80 -0.01 3.37 16 3 C -0.13 -2.18 8.85 71.98 0.64 -1.55 16 4 C -0.18 -5.04 8.37 71.98 0.60 -4.44 16 5 O -0.37 -10.31 9.87 -55.43 -0.55 -10.86 16 6 C 0.65 20.81 8.12 129.79 1.05 21.86 16 7 O -0.58 -23.78 11.43 22.56 0.26 -23.52 16 8 N -0.64 -15.07 3.49 -943.62 -3.30 -18.37 16 9 C 0.10 1.21 8.89 86.44 0.77 1.97 16 10 C -0.12 -0.90 7.85 31.25 0.25 -0.66 16 11 C 0.15 2.83 4.54 45.09 0.20 3.03 16 12 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 13 C 0.05 1.25 5.21 71.98 0.38 1.63 16 14 O -0.38 -13.33 9.69 -145.21 -1.41 -14.74 16 15 C 0.09 3.10 4.48 31.24 0.14 3.24 16 16 C 0.01 0.42 7.32 86.37 0.63 1.05 16 17 N -0.49 -24.21 6.25 -915.64 -5.72 -29.94 16 18 C 0.18 10.97 4.58 85.56 0.39 11.37 16 19 C -0.53 -33.34 8.84 25.60 0.23 -33.11 16 20 H 0.06 3.59 7.80 -2.91 -0.02 3.56 16 21 C 0.00 0.07 5.46 84.65 0.46 0.53 16 22 N -0.93 -60.15 13.29 21.45 0.28 -59.87 16 23 Si 0.97 47.41 29.54 68.60 2.03 49.44 16 24 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 C 0.00 0.06 7.81 86.41 0.67 0.73 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.86 5.88 -2.39 -0.01 1.85 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.90 5.88 -2.39 -0.01 1.89 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.10 0.71 8.10 -2.38 -0.02 0.69 16 41 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.12 3.45 7.89 -2.38 -0.02 3.43 16 44 H 0.04 2.03 7.79 -2.39 -0.02 2.01 16 45 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 47 H -0.04 -2.51 7.70 -2.39 -0.02 -2.53 16 48 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 49 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 50 H 0.05 2.16 7.80 -2.39 -0.02 2.14 16 Total: -1.00 -85.77 402.11 -0.50 -86.27 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.89 Total: 17.15 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 7.01 Total: 4.43 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -8.74 Total: -108.17 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -1.70 Total: -49.12 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -85.77 -0.50 -86.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225054564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.648 kcal (2) G-P(sol) polarization free energy of solvation -85.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds