Wall clock time and date at job start Tue Mar 31 2020 14:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47502 * 2 1 4 4 C 1.53004 * 109.47353 * 240.00068 * 2 1 3 5 5 O 1.45198 * 109.46841 * 120.00371 * 2 1 3 6 6 C 1.34638 * 117.00226 * 60.00132 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99962 * 179.97438 * 6 5 2 9 9 C 1.47061 * 136.05697 * 359.62803 * 8 6 5 10 10 C 1.53758 * 87.88595 * 152.96014 * 9 8 6 11 11 C 1.47062 * 136.05762 * 179.97438 * 8 6 5 12 12 H 1.09000 * 113.46348 * 92.30239 * 11 8 6 13 13 C 1.52997 * 113.46717 * 321.87119 * 11 8 6 14 14 O 1.42899 * 109.47613 * 84.50403 * 13 11 8 15 15 C 1.42904 * 114.00453 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.88307 * 26.11743 * 15 14 13 17 17 C 1.55152 * 111.00490 * 149.99403 * 15 14 13 18 18 C 1.54329 * 102.94199 * 153.57657 * 17 15 14 19 19 N 1.47021 * 107.26743 * 337.81061 * 18 17 15 20 20 C 1.36943 * 125.64854 * 178.95888 * 19 18 17 21 21 H 1.08000 * 119.99943 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99913 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99939 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00360 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47182 * 89.99118 * 24 22 20 26 26 H 1.48501 * 109.47259 * 209.99691 * 24 22 20 27 27 H 1.48508 * 109.46814 * 329.99707 * 24 22 20 28 28 C 1.47422 * 108.70815 * 358.93951 * 19 18 17 29 29 H 1.08998 * 109.47144 * 299.99721 * 1 2 3 30 30 H 1.08999 * 109.46619 * 59.99987 * 1 2 3 31 31 H 1.08996 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47145 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47198 * 300.00218 * 3 2 1 34 34 H 1.09006 * 109.46544 * 59.99729 * 3 2 1 35 35 H 1.09005 * 109.46836 * 300.00480 * 4 2 1 36 36 H 1.08999 * 109.46845 * 60.00089 * 4 2 1 37 37 H 1.08994 * 109.47403 * 180.02562 * 4 2 1 38 38 H 1.09001 * 113.47097 * 267.69486 * 9 8 6 39 39 H 1.09001 * 113.46791 * 38.13825 * 9 8 6 40 40 H 1.08993 * 114.39708 * 272.67548 * 10 9 8 41 41 H 1.09006 * 114.26434 * 139.79295 * 10 9 8 42 42 H 1.09006 * 109.47550 * 204.50374 * 13 11 8 43 43 H 1.09004 * 109.47304 * 324.49655 * 13 11 8 44 44 H 1.08999 * 110.72669 * 271.94095 * 17 15 14 45 45 H 1.08997 * 110.72317 * 35.03967 * 17 15 14 46 46 H 1.09000 * 109.88268 * 97.22307 * 18 17 15 47 47 H 1.09001 * 109.88593 * 218.39417 * 18 17 15 48 48 H 0.97000 * 120.00421 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.36379 * 265.29486 * 28 19 18 50 50 H 1.08994 * 110.37377 * 142.96737 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6659 2.4166 9 6 2.8984 -2.3886 3.5982 10 6 2.1050 -3.4765 4.3405 11 6 1.8959 -4.0346 2.9263 12 1 2.6832 -4.7182 2.6085 13 6 0.4926 -4.5988 2.6953 14 8 0.4130 -5.1548 1.3813 15 6 -0.8639 -5.7115 1.0621 16 1 -1.6522 -5.2349 1.6448 17 6 -1.1533 -5.6032 -0.4583 18 6 -2.1256 -6.7751 -0.7094 19 7 -1.9289 -7.7458 0.3771 20 6 -2.6165 -8.9198 0.5327 21 1 -2.3965 -9.5678 1.3683 22 6 -3.5964 -9.2769 -0.3834 23 7 -3.8648 -8.4869 -1.4014 24 14 -4.5350 -10.8778 -0.1708 25 1 -5.7455 -10.6361 0.6548 26 1 -4.9394 -11.3952 -1.5027 27 1 -3.6662 -11.8750 0.5047 28 6 -0.8684 -7.2464 1.2711 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9502 -2.6380 3.4578 39 1 2.7527 -1.3884 4.0062 40 1 1.1930 -3.1206 4.8197 41 1 2.7116 -4.1112 4.9865 42 1 0.2877 -5.3760 3.4317 43 1 -0.2416 -3.7996 2.7969 44 1 -1.6284 -4.6508 -0.6937 45 1 -0.2371 -5.7284 -1.0353 46 1 -3.1535 -6.4123 -0.7008 47 1 -1.9032 -7.2423 -1.6688 48 1 -4.5493 -8.7365 -2.0418 49 1 0.0957 -7.6703 0.9898 50 1 -1.1016 -7.4873 2.3082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225054643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:19 Heat of formation + Delta-G solvation = -52.641950 kcal Electronic energy + Delta-G solvation = -29342.488295 eV Core-core repulsion = 25372.780929 eV Total energy + Delta-G solvation = -3969.707366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96218 -39.60735 -37.98165 -36.44502 -35.64217 -34.08744 -32.12458 -30.13612 -29.27572 -28.43108 -27.55823 -27.46243 -26.76647 -24.26034 -23.42454 -23.07097 -20.92826 -20.16606 -19.92180 -19.14255 -17.87614 -16.87996 -16.71855 -16.62640 -16.11934 -15.56177 -15.28576 -14.63982 -14.56694 -14.34102 -14.16948 -13.87557 -13.55206 -13.21849 -13.04449 -12.81850 -12.65352 -12.32979 -12.31605 -12.06067 -12.00428 -11.95573 -11.89924 -11.77104 -11.48597 -11.38817 -11.29503 -10.95727 -10.89059 -10.75823 -10.61775 -10.40465 -10.06723 -10.01474 -9.87128 -9.63759 -9.61717 -8.91421 -8.84178 -8.52594 -6.75508 -5.64035 -2.97991 1.89278 2.93844 3.44001 3.48302 3.50940 3.62480 3.86899 4.15795 4.56536 4.58938 4.61075 4.65223 4.77379 4.90653 5.01769 5.06521 5.14110 5.25088 5.29826 5.38479 5.38735 5.47269 5.52771 5.55231 5.57651 5.60950 5.64482 5.70790 5.75223 5.76823 5.84801 5.93861 5.98811 6.02790 6.22836 6.27288 6.45664 6.49291 6.58866 6.75475 6.82926 6.86010 7.63454 7.66231 7.74142 7.79503 7.92414 8.33320 8.42907 9.28590 9.89036 10.55923 11.47443 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002838 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.512139 B = 9862.826345 C =11143.734018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.671 3.329 7 O -0.533 6.533 8 N -0.634 5.634 9 C 0.104 3.896 10 C -0.148 4.148 11 C 0.163 3.837 12 H 0.104 0.896 13 C 0.059 3.941 14 O -0.361 6.361 15 C 0.079 3.921 16 H 0.061 0.939 17 C -0.132 4.132 18 C 0.179 3.821 19 N -0.605 5.605 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.120 3.880 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.252 0.748 49 H 0.026 0.974 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.258 19.758 9.903 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.284 6.284 6 C 0.427 3.573 7 O -0.419 6.419 8 N -0.379 5.379 9 C -0.019 4.019 10 C -0.186 4.186 11 C 0.061 3.939 12 H 0.122 0.878 13 C -0.019 4.019 14 O -0.279 6.279 15 C 0.020 3.980 16 H 0.079 0.921 17 C -0.170 4.170 18 C 0.054 3.946 19 N -0.332 5.332 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.007 4.007 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.927 19.675 9.105 26.322 hybrid contribution -0.708 -0.757 0.083 1.040 sum 14.219 18.918 9.188 25.387 Atomic orbital electron populations 1.22520 0.93933 1.05426 1.02221 1.22034 0.94421 0.91264 0.82236 1.21844 1.02023 0.92752 1.02960 1.22517 1.01268 1.03934 0.96374 1.86268 1.71729 1.23994 1.46432 1.17374 0.79427 0.80215 0.80263 1.91033 1.40003 1.69902 1.40946 1.48390 1.53622 1.14054 1.21789 1.22955 0.95658 1.00227 0.83043 1.23549 1.01784 0.98201 0.95108 1.22744 0.98278 0.82881 0.89984 0.87840 1.22633 0.95249 0.96992 0.87008 1.87967 1.33204 1.76889 1.29854 1.23311 0.83711 0.93805 0.97147 0.92093 1.22899 1.00393 0.99905 0.93844 1.21165 0.95456 0.86192 0.91772 1.44373 1.40704 1.21537 1.26620 1.19063 1.12989 0.95210 1.08222 0.90468 1.24820 0.99524 0.98850 0.97418 1.69977 1.34894 1.36980 1.15093 0.86107 0.79862 0.82892 0.76825 1.21662 1.21681 1.20721 1.21905 0.92770 0.91846 0.94158 0.92429 0.91203 0.89043 0.91673 0.90190 0.91675 0.89007 0.91206 0.92440 0.89657 0.90134 0.88284 0.88337 0.92178 0.93210 0.92094 0.91734 0.93557 0.93774 0.93787 0.95602 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 2 C 0.14 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 5 O -0.37 -4.78 9.91 -40.32 -0.40 -5.18 16 6 C 0.67 9.90 8.17 54.06 0.44 10.34 16 7 O -0.53 -9.47 11.30 -23.21 -0.26 -9.73 16 8 N -0.63 -7.66 3.56 -183.15 -0.65 -8.32 16 9 C 0.10 0.77 8.65 -8.38 -0.07 0.70 16 10 C -0.15 -0.96 8.04 -26.09 -0.21 -1.17 16 11 C 0.16 1.77 4.32 -72.42 -0.31 1.46 16 12 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 13 C 0.06 0.82 5.22 37.16 0.19 1.02 16 14 O -0.36 -6.68 9.28 -43.62 -0.40 -7.09 16 15 C 0.08 1.61 3.54 -24.59 -0.09 1.53 16 16 H 0.06 1.23 7.83 -51.93 -0.41 0.82 16 17 C -0.13 -2.92 6.69 -24.90 -0.17 -3.08 16 18 C 0.18 4.71 5.37 -3.06 -0.02 4.70 16 19 N -0.60 -16.53 3.39 -170.07 -0.58 -17.11 16 20 C -0.23 -6.59 10.28 -15.06 -0.15 -6.75 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -28.09 10.31 55.49 0.57 -27.52 16 24 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 C 0.12 2.73 6.97 -2.53 -0.02 2.71 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 47 H 0.04 1.27 7.51 -51.93 -0.39 0.88 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -35.20 395.23 -9.38 -44.59 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.94 Total: -1.39 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.35 Total: 8.13 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.66 Total: -52.95 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.07 Total: -22.01 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.20 -9.38 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225054643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.055 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds