Wall clock time and date at job start Tue Mar 31 2020 14:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47502 * 2 1 4 4 C 1.53004 * 109.47353 * 240.00068 * 2 1 3 5 5 O 1.45198 * 109.46841 * 120.00371 * 2 1 3 6 6 C 1.34638 * 117.00226 * 60.00132 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99962 * 179.97438 * 6 5 2 9 9 C 1.47061 * 136.05697 * 359.62803 * 8 6 5 10 10 C 1.53758 * 87.88595 * 152.96014 * 9 8 6 11 11 C 1.47062 * 136.05762 * 179.97438 * 8 6 5 12 12 H 1.09000 * 113.46348 * 92.30239 * 11 8 6 13 13 C 1.52997 * 113.46717 * 321.87119 * 11 8 6 14 14 O 1.42899 * 109.47613 * 84.50403 * 13 11 8 15 15 C 1.42904 * 114.00453 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.88307 * 26.11743 * 15 14 13 17 17 C 1.55152 * 111.00490 * 149.99403 * 15 14 13 18 18 C 1.54329 * 102.94199 * 153.57657 * 17 15 14 19 19 N 1.47021 * 107.26743 * 337.81061 * 18 17 15 20 20 C 1.36943 * 125.64854 * 178.95888 * 19 18 17 21 21 H 1.08000 * 119.99943 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99913 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99939 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00360 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47182 * 89.99118 * 24 22 20 26 26 H 1.48501 * 109.47259 * 209.99691 * 24 22 20 27 27 H 1.48508 * 109.46814 * 329.99707 * 24 22 20 28 28 C 1.47422 * 108.70815 * 358.93951 * 19 18 17 29 29 H 1.08998 * 109.47144 * 299.99721 * 1 2 3 30 30 H 1.08999 * 109.46619 * 59.99987 * 1 2 3 31 31 H 1.08996 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47145 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47198 * 300.00218 * 3 2 1 34 34 H 1.09006 * 109.46544 * 59.99729 * 3 2 1 35 35 H 1.09005 * 109.46836 * 300.00480 * 4 2 1 36 36 H 1.08999 * 109.46845 * 60.00089 * 4 2 1 37 37 H 1.08994 * 109.47403 * 180.02562 * 4 2 1 38 38 H 1.09001 * 113.47097 * 267.69486 * 9 8 6 39 39 H 1.09001 * 113.46791 * 38.13825 * 9 8 6 40 40 H 1.08993 * 114.39708 * 272.67548 * 10 9 8 41 41 H 1.09006 * 114.26434 * 139.79295 * 10 9 8 42 42 H 1.09006 * 109.47550 * 204.50374 * 13 11 8 43 43 H 1.09004 * 109.47304 * 324.49655 * 13 11 8 44 44 H 1.08999 * 110.72669 * 271.94095 * 17 15 14 45 45 H 1.08997 * 110.72317 * 35.03967 * 17 15 14 46 46 H 1.09000 * 109.88268 * 97.22307 * 18 17 15 47 47 H 1.09001 * 109.88593 * 218.39417 * 18 17 15 48 48 H 0.97000 * 120.00421 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.36379 * 265.29486 * 28 19 18 50 50 H 1.08994 * 110.37377 * 142.96737 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6659 2.4166 9 6 2.8984 -2.3886 3.5982 10 6 2.1050 -3.4765 4.3405 11 6 1.8959 -4.0346 2.9263 12 1 2.6832 -4.7182 2.6085 13 6 0.4926 -4.5988 2.6953 14 8 0.4130 -5.1548 1.3813 15 6 -0.8639 -5.7115 1.0621 16 1 -1.6522 -5.2349 1.6448 17 6 -1.1533 -5.6032 -0.4583 18 6 -2.1256 -6.7751 -0.7094 19 7 -1.9289 -7.7458 0.3771 20 6 -2.6165 -8.9198 0.5327 21 1 -2.3965 -9.5678 1.3683 22 6 -3.5964 -9.2769 -0.3834 23 7 -3.8648 -8.4869 -1.4014 24 14 -4.5350 -10.8778 -0.1708 25 1 -5.7455 -10.6361 0.6548 26 1 -4.9394 -11.3952 -1.5027 27 1 -3.6662 -11.8750 0.5047 28 6 -0.8684 -7.2464 1.2711 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9502 -2.6380 3.4578 39 1 2.7527 -1.3884 4.0062 40 1 1.1930 -3.1206 4.8197 41 1 2.7116 -4.1112 4.9865 42 1 0.2877 -5.3760 3.4317 43 1 -0.2416 -3.7996 2.7969 44 1 -1.6284 -4.6508 -0.6937 45 1 -0.2371 -5.7284 -1.0353 46 1 -3.1535 -6.4123 -0.7008 47 1 -1.9032 -7.2423 -1.6688 48 1 -4.5493 -8.7365 -2.0418 49 1 0.0957 -7.6703 0.9898 50 1 -1.1016 -7.4873 2.3082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225054643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:18 Heat of formation + Delta-G solvation = -75.376378 kcal Electronic energy + Delta-G solvation = -29343.474134 eV Core-core repulsion = 25372.780929 eV Total energy + Delta-G solvation = -3970.693205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88354 -40.50945 -39.63259 -37.49170 -37.33849 -34.99996 -34.20552 -31.36057 -30.85874 -29.70215 -28.53491 -28.37502 -28.28020 -26.31481 -24.33496 -23.89709 -22.08121 -21.96493 -21.60539 -20.07838 -19.00769 -18.72666 -18.01496 -17.67592 -17.23059 -16.72143 -16.54897 -16.31564 -15.92744 -15.65543 -15.27330 -15.18509 -14.85244 -14.59391 -14.18556 -14.03110 -13.83835 -13.67564 -13.39603 -13.31169 -13.11172 -12.94000 -12.87289 -12.84690 -12.82611 -12.72609 -12.58858 -12.34123 -12.28749 -12.19829 -12.06187 -12.03807 -11.80117 -11.57631 -11.44728 -11.34823 -10.91819 -10.74464 -10.39817 -9.76642 -8.95748 -7.86587 -5.24799 1.01970 1.45066 1.48471 1.57245 1.89679 2.44777 2.64699 2.90641 3.31815 3.41114 3.69534 3.76852 3.79826 3.80330 3.90998 3.95086 4.04566 4.10256 4.16196 4.22014 4.26646 4.43850 4.51207 4.56487 4.59998 4.61992 4.67135 4.73450 4.74637 4.75520 4.82332 4.88170 4.93774 4.99037 5.00878 5.02487 5.06093 5.13264 5.27933 5.31583 5.35738 5.41150 5.56260 5.56976 5.66971 6.12872 6.37621 6.75267 7.05159 7.40518 7.71701 8.37780 9.24239 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002838 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.512139 B = 9862.826345 C =11143.734018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 C -0.131 4.131 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.660 3.340 7 O -0.575 6.575 8 N -0.645 5.645 9 C 0.104 3.896 10 C -0.121 4.121 11 C 0.152 3.848 12 H 0.108 0.892 13 C 0.051 3.949 14 O -0.374 6.374 15 C 0.099 3.901 16 H 0.065 0.935 17 C -0.120 4.120 18 C 0.192 3.808 19 N -0.626 5.626 20 C -0.246 4.246 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.986 3.014 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.266 1.266 28 C 0.121 3.879 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.009 0.991 48 H 0.248 0.752 49 H 0.024 0.976 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.777 20.597 12.403 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.188 4.188 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.416 3.584 7 O -0.464 6.464 8 N -0.390 5.390 9 C -0.017 4.017 10 C -0.159 4.159 11 C 0.050 3.950 12 H 0.126 0.874 13 C -0.026 4.026 14 O -0.292 6.292 15 C 0.040 3.960 16 H 0.083 0.917 17 C -0.158 4.158 18 C 0.067 3.933 19 N -0.353 5.353 20 C -0.374 4.374 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.814 3.186 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.191 1.191 28 C -0.005 4.005 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.152 0.848 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.027 0.973 48 H 0.057 0.943 49 H 0.042 0.958 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.500 20.534 11.672 28.812 hybrid contribution -1.115 -0.978 -0.664 1.626 sum 15.385 19.556 11.008 27.208 Atomic orbital electron populations 1.22457 0.94527 1.03304 1.03358 1.22338 0.94177 0.92840 0.81525 1.21850 1.02422 0.90256 1.04292 1.22452 1.01498 1.02032 0.97643 1.86275 1.71625 1.23325 1.47173 1.17741 0.79380 0.80666 0.80611 1.91011 1.41904 1.70764 1.42704 1.48763 1.53797 1.14600 1.21796 1.23257 0.96269 1.01346 0.80865 1.23546 1.02233 0.97318 0.92776 1.23069 0.96242 0.82652 0.93039 0.87449 1.22963 0.97338 0.97158 0.85121 1.87955 1.31537 1.76862 1.32848 1.22912 0.85051 0.92487 0.95547 0.91718 1.22685 0.99111 0.98349 0.95692 1.20841 0.94860 0.87211 0.90415 1.44680 1.41578 1.21480 1.27594 1.19518 1.13253 0.96085 1.08550 0.89472 1.25784 1.00694 1.02572 0.97173 1.70210 1.35349 1.38844 1.15892 0.84967 0.78441 0.78680 0.76538 1.20950 1.22072 1.19087 1.22018 0.91236 0.93162 0.94097 0.91870 0.89440 0.92693 0.91012 0.88187 0.91007 0.92707 0.89393 0.91897 0.87646 0.89038 0.87868 0.84770 0.90158 0.94307 0.91256 0.92063 0.96482 0.97290 0.94296 0.95809 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 8.37 71.98 0.60 -3.53 16 2 C 0.13 2.76 1.13 -10.79 -0.01 2.75 16 3 C -0.13 -1.78 8.85 71.98 0.64 -1.14 16 4 C -0.18 -4.13 8.37 71.98 0.60 -3.52 16 5 O -0.37 -9.42 9.91 -55.47 -0.55 -9.97 16 6 C 0.66 19.62 8.17 129.79 1.06 20.68 16 7 O -0.57 -21.34 11.30 23.58 0.27 -21.08 16 8 N -0.65 -14.81 3.56 -963.77 -3.43 -18.25 16 9 C 0.10 1.21 8.65 83.26 0.72 1.93 16 10 C -0.12 -1.12 8.04 31.01 0.25 -0.87 16 11 C 0.15 3.00 4.32 41.78 0.18 3.18 16 12 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 13 C 0.05 1.37 5.22 71.98 0.38 1.75 16 14 O -0.37 -13.81 9.28 -140.96 -1.31 -15.12 16 15 C 0.10 4.08 3.54 31.98 0.11 4.20 16 16 H 0.06 2.61 7.83 -2.39 -0.02 2.59 16 17 C -0.12 -5.50 6.69 31.78 0.21 -5.28 16 18 C 0.19 10.60 5.37 86.73 0.47 11.07 16 19 N -0.63 -34.93 3.39 -691.98 -2.35 -37.28 16 20 C -0.25 -14.43 10.28 84.03 0.86 -13.57 16 21 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 22 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 23 N -0.95 -60.12 10.31 21.65 0.22 -59.90 16 24 Si 0.99 47.08 29.55 68.60 2.03 49.10 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C 0.12 5.47 6.97 86.85 0.61 6.07 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.70 5.88 -2.39 -0.01 1.69 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 1.70 5.88 -2.38 -0.01 1.69 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.93 8.12 -2.39 -0.02 0.91 16 41 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.04 1.12 8.12 -2.38 -0.02 1.10 16 44 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.02 1.02 7.38 -2.39 -0.02 1.01 16 47 H 0.01 0.54 7.51 -2.39 -0.02 0.53 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.02 1.10 8.14 -2.38 -0.02 1.09 16 50 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -80.33 395.23 2.91 -77.42 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.90 Total: 15.01 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 7.14 Total: 20.05 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -5.56 Total: -115.42 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -1.59 Total: -46.16 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -80.33 2.91 -77.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225054643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.043 kcal (2) G-P(sol) polarization free energy of solvation -80.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds