Wall clock time and date at job start Tue Mar 31 2020 14:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47316 * 2 1 4 4 C 1.52997 * 109.47553 * 239.99477 * 2 1 3 5 5 O 1.45208 * 109.46599 * 119.99480 * 2 1 3 6 6 C 1.34636 * 116.99716 * 60.00397 * 5 2 1 7 7 O 1.21510 * 120.00519 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99623 * 179.97438 * 6 5 2 9 9 C 1.47070 * 136.06093 * 359.94654 * 8 6 5 10 10 C 1.53491 * 87.98616 * 152.91312 * 9 8 6 11 11 C 1.47065 * 136.05902 * 179.97438 * 8 6 5 12 12 H 1.09003 * 113.46492 * 92.24387 * 11 8 6 13 13 C 1.53001 * 113.46956 * 321.87103 * 11 8 6 14 14 O 1.42906 * 109.47157 * 84.49815 * 13 11 8 15 15 C 1.42898 * 113.99684 * 180.02562 * 14 13 11 16 16 C 1.53518 * 114.16882 * 209.99886 * 15 14 13 17 17 N 1.47476 * 87.93258 * 220.32939 * 16 15 14 18 18 C 1.46904 * 110.99795 * 138.70552 * 17 16 15 19 19 C 1.50695 * 109.46907 * 170.00052 * 18 17 16 20 20 H 1.07999 * 120.00538 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99661 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 C 1.47479 * 87.83549 * 27.01042 * 17 16 15 28 28 H 1.08999 * 109.47253 * 300.01097 * 1 2 3 29 29 H 1.09000 * 109.46607 * 60.00023 * 1 2 3 30 30 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47178 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47264 * 299.99575 * 3 2 1 33 33 H 1.08999 * 109.47855 * 59.99272 * 3 2 1 34 34 H 1.09008 * 109.46625 * 300.00512 * 4 2 1 35 35 H 1.09002 * 109.47193 * 59.99958 * 4 2 1 36 36 H 1.08996 * 109.47412 * 180.02562 * 4 2 1 37 37 H 1.09002 * 113.46773 * 267.69803 * 9 8 6 38 38 H 1.09011 * 113.46579 * 38.07588 * 9 8 6 39 39 H 1.09007 * 114.20748 * 272.48015 * 10 9 8 40 40 H 1.09003 * 114.20460 * 139.65889 * 10 9 8 41 41 H 1.09007 * 109.46991 * 324.50463 * 13 11 8 42 42 H 1.08997 * 109.47506 * 204.49729 * 13 11 8 43 43 H 1.09000 * 113.38952 * 343.07872 * 15 14 13 44 44 H 1.09004 * 113.47752 * 105.56064 * 16 15 14 45 45 H 1.09005 * 113.47748 * 335.10308 * 16 15 14 46 46 H 1.09002 * 109.47117 * 49.99632 * 18 17 16 47 47 H 1.09000 * 109.46655 * 289.99965 * 18 17 16 48 48 H 0.97001 * 119.99697 * 359.97438 * 22 21 19 49 49 H 1.09007 * 113.47539 * 87.75738 * 27 17 16 50 50 H 1.09002 * 113.47822 * 218.21858 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9722 1.3385 7 8 0.9508 -2.5095 0.5042 8 7 2.0678 -2.6655 2.4169 9 6 2.8936 -2.3865 3.6015 10 6 2.1048 -3.4759 4.3410 11 6 1.8957 -4.0342 2.9268 12 1 2.6825 -4.7181 2.6083 13 6 0.4925 -4.5985 2.6958 14 8 0.4130 -5.1546 1.3818 15 6 -0.8638 -5.7113 1.0626 16 6 -0.8088 -6.8827 0.0719 17 7 -2.0138 -6.3260 -0.5708 18 6 -1.9156 -6.4083 -2.0342 19 6 -3.2483 -6.0633 -2.6472 20 1 -4.0848 -5.8089 -2.0132 21 6 -3.3998 -6.0726 -4.0177 22 7 -2.3811 -6.3820 -4.7898 23 14 -5.0520 -5.6457 -4.7776 24 1 -5.1182 -4.1836 -5.0292 25 1 -6.1410 -6.0377 -3.8471 26 1 -5.2103 -6.3764 -6.0607 27 6 -1.5908 -4.9988 -0.0864 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 3.9469 -2.6310 3.4637 38 1 2.7430 -1.3872 4.0100 39 1 1.1926 -3.1200 4.8201 40 1 2.7141 -4.1090 4.9860 41 1 -0.2418 -3.7993 2.7971 42 1 0.2876 -5.3757 3.4322 43 1 -1.4864 -5.8962 1.9381 44 1 -0.9747 -7.8540 0.5381 45 1 0.0721 -6.8676 -0.5700 46 1 -1.6339 -7.4209 -2.3231 47 1 -1.1604 -5.7062 -2.3876 48 1 -1.5231 -6.6033 -4.3952 49 1 -0.9186 -4.4808 -0.7706 50 1 -2.4194 -4.3733 0.2456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225056546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:02 Heat of formation + Delta-G solvation = -43.777185 kcal Electronic energy + Delta-G solvation = -29402.735018 eV Core-core repulsion = 25433.412057 eV Total energy + Delta-G solvation = -3969.322961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00762 -39.72315 -39.29784 -36.47329 -36.29766 -34.05945 -33.05265 -30.23572 -29.31355 -28.11933 -27.50039 -27.39271 -25.27881 -24.51064 -23.50099 -23.20947 -21.69693 -20.92601 -19.46024 -19.12007 -17.92846 -17.11996 -16.75027 -16.58361 -16.11650 -15.67555 -15.46452 -15.04458 -14.73175 -14.29666 -14.19436 -13.76439 -13.63791 -13.58288 -13.12138 -13.05807 -12.64523 -12.61006 -12.50997 -12.28926 -12.02726 -11.96353 -11.94189 -11.89536 -11.61313 -11.39771 -11.28201 -11.18278 -11.05713 -10.72776 -10.67317 -10.51441 -10.37087 -10.05262 -9.89600 -9.85840 -9.02204 -8.94018 -8.64700 -8.29733 -7.85136 -6.29983 -3.97447 1.85997 2.91984 3.48655 3.53334 3.54779 3.69460 3.74522 4.02760 4.54521 4.59333 4.64298 4.67774 4.81103 4.83384 4.87557 4.89760 4.98408 5.02807 5.10764 5.18145 5.26091 5.32916 5.35847 5.44375 5.44679 5.45858 5.53046 5.63584 5.65895 5.69818 5.81449 5.85700 5.93103 5.96956 6.13368 6.19545 6.30422 6.34334 6.44158 6.47965 6.53441 6.61676 7.02405 7.52232 7.53862 7.61884 7.92989 8.30674 8.41473 8.65942 8.94009 9.73007 11.09545 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.003483 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.618825 B = 8038.002466 C = 9951.737159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.671 3.329 7 O -0.531 6.531 8 N -0.635 5.635 9 C 0.104 3.896 10 C -0.148 4.148 11 C 0.162 3.838 12 H 0.103 0.897 13 C 0.058 3.942 14 O -0.357 6.357 15 C 0.057 3.943 16 C -0.004 4.004 17 N -0.460 5.460 18 C 0.152 3.848 19 C -0.583 4.583 20 H 0.056 0.944 21 C 0.012 3.988 22 N -0.916 5.916 23 Si 1.077 2.923 24 H -0.289 1.289 25 H -0.288 1.288 26 H -0.285 1.285 27 C 0.005 3.995 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.018 0.982 47 H -0.005 1.005 48 H 0.266 0.734 49 H 0.075 0.925 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 12.443 20.632 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.101 3.899 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.284 6.284 6 C 0.427 3.573 7 O -0.416 6.416 8 N -0.380 5.380 9 C -0.019 4.019 10 C -0.186 4.186 11 C 0.060 3.940 12 H 0.121 0.879 13 C -0.020 4.020 14 O -0.275 6.275 15 C -0.002 4.002 16 C -0.133 4.133 17 N -0.184 5.184 18 C 0.025 3.975 19 C -0.621 4.621 20 H 0.075 0.925 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.905 3.095 24 H -0.215 1.215 25 H -0.214 1.214 26 H -0.210 1.210 27 C -0.125 4.125 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.036 0.964 47 H 0.012 0.988 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.997 12.369 18.618 25.368 hybrid contribution 1.493 0.206 1.114 1.874 sum 13.490 12.575 19.732 27.009 Atomic orbital electron populations 1.22522 0.93813 1.05497 1.02283 1.22055 0.94488 0.91231 0.82099 1.21844 1.01982 0.92718 1.03006 1.22519 1.01174 1.03985 0.96464 1.86261 1.71706 1.23850 1.46556 1.17386 0.79392 0.80323 0.80202 1.91057 1.39831 1.69902 1.40842 1.48348 1.53994 1.13828 1.21806 1.22900 0.95744 1.00257 0.82989 1.23506 1.01845 0.98232 0.95005 1.22724 0.97970 0.83147 0.90137 0.87939 1.22686 0.95747 0.97238 0.86327 1.88045 1.32375 1.76572 1.30466 1.23890 0.84528 0.95295 0.96466 1.24050 0.95269 0.97562 0.96429 1.68906 1.30397 1.06972 1.12118 1.20344 0.97956 0.95916 0.83245 1.21941 0.96422 1.50094 0.93692 0.92532 1.25888 1.04614 0.94700 0.93947 1.70763 1.02409 1.43793 1.38341 0.83442 0.74079 0.76460 0.75540 1.21543 1.21390 1.21031 1.24138 0.97871 0.94282 0.96191 0.92469 0.91045 0.89037 0.91694 0.90102 0.91689 0.89068 0.91030 0.92469 0.89675 0.90070 0.88270 0.88357 0.92848 0.92174 0.89262 0.90496 0.91581 0.96445 0.98763 0.92373 0.90699 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 2 C 0.14 1.68 1.13 -90.62 -0.10 1.58 16 3 C -0.14 -1.22 8.85 37.15 0.33 -0.89 16 4 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 5 O -0.37 -4.98 9.91 -40.31 -0.40 -5.38 16 6 C 0.67 10.08 8.17 54.06 0.44 10.52 16 7 O -0.53 -9.76 11.30 -23.21 -0.26 -10.02 16 8 N -0.64 -7.47 3.57 -183.30 -0.65 -8.12 16 9 C 0.10 0.72 8.64 -8.52 -0.07 0.65 16 10 C -0.15 -0.81 8.03 -26.23 -0.21 -1.02 16 11 C 0.16 1.59 4.33 -72.42 -0.31 1.28 16 12 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 13 C 0.06 0.70 5.23 37.16 0.19 0.90 16 14 O -0.36 -6.02 9.52 -43.62 -0.42 -6.43 16 15 C 0.06 1.01 4.65 -26.20 -0.12 0.89 16 16 C 0.00 -0.07 7.52 -7.55 -0.06 -0.13 16 17 N -0.46 -11.11 6.32 -246.12 -1.55 -12.67 16 18 C 0.15 4.30 3.88 -4.98 -0.02 4.28 16 19 C -0.58 -17.87 9.39 -34.44 -0.32 -18.19 16 20 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 22 N -0.92 -29.34 13.65 55.43 0.76 -28.59 16 23 Si 1.08 26.70 29.90 -169.99 -5.08 21.62 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.00 0.10 7.55 -7.55 -0.06 0.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.48 5.88 -51.93 -0.31 1.18 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.52 5.88 -51.92 -0.31 1.21 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.40 7.88 -51.93 -0.41 0.99 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 46 H 0.02 0.52 7.95 -51.93 -0.41 0.10 16 47 H -0.01 -0.16 7.17 -51.93 -0.37 -0.53 16 48 H 0.27 8.54 7.22 -40.82 -0.29 8.25 16 49 H 0.07 1.83 7.42 -51.92 -0.39 1.45 16 50 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -36.99 400.44 -10.23 -47.22 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.86 Total: 0.33 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.21 Total: -4.00 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -1.45 Total: -49.38 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.08 Total: -21.83 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -5.08 Total: 21.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.99 -10.23 -47.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225056546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.447 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds