Wall clock time and date at job start Tue Mar 31 2020 14:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47316 * 2 1 4 4 C 1.52997 * 109.47553 * 239.99477 * 2 1 3 5 5 O 1.45208 * 109.46599 * 119.99480 * 2 1 3 6 6 C 1.34636 * 116.99716 * 60.00397 * 5 2 1 7 7 O 1.21510 * 120.00519 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99623 * 179.97438 * 6 5 2 9 9 C 1.47070 * 136.06093 * 359.94654 * 8 6 5 10 10 C 1.53491 * 87.98616 * 152.91312 * 9 8 6 11 11 C 1.47065 * 136.05902 * 179.97438 * 8 6 5 12 12 H 1.09003 * 113.46492 * 92.24387 * 11 8 6 13 13 C 1.53001 * 113.46956 * 321.87103 * 11 8 6 14 14 O 1.42906 * 109.47157 * 84.49815 * 13 11 8 15 15 C 1.42898 * 113.99684 * 180.02562 * 14 13 11 16 16 C 1.53518 * 114.16882 * 209.99886 * 15 14 13 17 17 N 1.47476 * 87.93258 * 220.32939 * 16 15 14 18 18 C 1.46904 * 110.99795 * 138.70552 * 17 16 15 19 19 C 1.50695 * 109.46907 * 170.00052 * 18 17 16 20 20 H 1.07999 * 120.00538 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99661 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 C 1.47479 * 87.83549 * 27.01042 * 17 16 15 28 28 H 1.08999 * 109.47253 * 300.01097 * 1 2 3 29 29 H 1.09000 * 109.46607 * 60.00023 * 1 2 3 30 30 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47178 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47264 * 299.99575 * 3 2 1 33 33 H 1.08999 * 109.47855 * 59.99272 * 3 2 1 34 34 H 1.09008 * 109.46625 * 300.00512 * 4 2 1 35 35 H 1.09002 * 109.47193 * 59.99958 * 4 2 1 36 36 H 1.08996 * 109.47412 * 180.02562 * 4 2 1 37 37 H 1.09002 * 113.46773 * 267.69803 * 9 8 6 38 38 H 1.09011 * 113.46579 * 38.07588 * 9 8 6 39 39 H 1.09007 * 114.20748 * 272.48015 * 10 9 8 40 40 H 1.09003 * 114.20460 * 139.65889 * 10 9 8 41 41 H 1.09007 * 109.46991 * 324.50463 * 13 11 8 42 42 H 1.08997 * 109.47506 * 204.49729 * 13 11 8 43 43 H 1.09000 * 113.38952 * 343.07872 * 15 14 13 44 44 H 1.09004 * 113.47752 * 105.56064 * 16 15 14 45 45 H 1.09005 * 113.47748 * 335.10308 * 16 15 14 46 46 H 1.09002 * 109.47117 * 49.99632 * 18 17 16 47 47 H 1.09000 * 109.46655 * 289.99965 * 18 17 16 48 48 H 0.97001 * 119.99697 * 359.97438 * 22 21 19 49 49 H 1.09007 * 113.47539 * 87.75738 * 27 17 16 50 50 H 1.09002 * 113.47822 * 218.21858 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9722 1.3385 7 8 0.9508 -2.5095 0.5042 8 7 2.0678 -2.6655 2.4169 9 6 2.8936 -2.3865 3.6015 10 6 2.1048 -3.4759 4.3410 11 6 1.8957 -4.0342 2.9268 12 1 2.6825 -4.7181 2.6083 13 6 0.4925 -4.5985 2.6958 14 8 0.4130 -5.1546 1.3818 15 6 -0.8638 -5.7113 1.0626 16 6 -0.8088 -6.8827 0.0719 17 7 -2.0138 -6.3260 -0.5708 18 6 -1.9156 -6.4083 -2.0342 19 6 -3.2483 -6.0633 -2.6472 20 1 -4.0848 -5.8089 -2.0132 21 6 -3.3998 -6.0726 -4.0177 22 7 -2.3811 -6.3820 -4.7898 23 14 -5.0520 -5.6457 -4.7776 24 1 -5.1182 -4.1836 -5.0292 25 1 -6.1410 -6.0377 -3.8471 26 1 -5.2103 -6.3764 -6.0607 27 6 -1.5908 -4.9988 -0.0864 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 3.9469 -2.6310 3.4637 38 1 2.7430 -1.3872 4.0100 39 1 1.1926 -3.1200 4.8201 40 1 2.7141 -4.1090 4.9860 41 1 -0.2418 -3.7993 2.7971 42 1 0.2876 -5.3757 3.4322 43 1 -1.4864 -5.8962 1.9381 44 1 -0.9747 -7.8540 0.5381 45 1 0.0721 -6.8676 -0.5700 46 1 -1.6339 -7.4209 -2.3231 47 1 -1.1604 -5.7062 -2.3876 48 1 -1.5231 -6.6033 -4.3952 49 1 -0.9186 -4.4808 -0.7706 50 1 -2.4194 -4.3733 0.2456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225056546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:01 Heat of formation + Delta-G solvation = -71.700208 kcal Electronic energy + Delta-G solvation = -29403.945851 eV Core-core repulsion = 25433.412057 eV Total energy + Delta-G solvation = -3970.533794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94709 -41.17102 -40.41759 -37.74811 -37.51167 -35.37900 -35.05216 -31.34279 -30.77142 -29.36680 -28.46079 -28.34297 -27.08050 -26.55423 -24.41116 -24.09080 -23.65242 -21.79287 -21.07056 -20.12678 -19.21734 -18.79027 -18.01687 -17.74256 -17.36788 -16.95593 -16.70132 -16.22299 -16.06698 -15.70447 -15.55417 -15.30670 -15.02661 -14.93404 -14.59963 -14.16086 -13.85989 -13.81930 -13.70955 -13.36865 -13.20213 -13.14321 -13.01932 -12.94666 -12.90283 -12.75083 -12.62540 -12.48333 -12.35642 -12.23951 -12.12747 -11.94460 -11.81440 -11.59059 -11.41686 -10.98279 -10.87121 -10.65775 -10.43412 -9.91439 -9.81222 -8.79123 -6.49011 0.96990 1.47385 1.58126 1.77460 1.84560 2.46705 2.53622 2.84649 3.04798 3.24095 3.36143 3.42641 3.69651 3.72612 3.78246 3.88054 3.94551 4.01519 4.12175 4.20654 4.30779 4.33989 4.40765 4.46755 4.49176 4.51641 4.55346 4.58153 4.64341 4.65336 4.66897 4.68643 4.71356 4.75369 4.82188 4.85536 4.97785 4.98822 5.07994 5.19813 5.28369 5.29146 5.36312 5.51523 5.74779 5.94315 6.25181 6.27614 6.46803 6.69854 7.32235 7.35510 8.60026 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.003483 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.618825 B = 8038.002466 C = 9951.737159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.131 3.869 3 C -0.130 4.130 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.658 3.342 7 O -0.578 6.578 8 N -0.646 5.646 9 C 0.101 3.899 10 C -0.116 4.116 11 C 0.148 3.852 12 H 0.107 0.893 13 C 0.049 3.951 14 O -0.378 6.378 15 C 0.091 3.909 16 C -0.005 4.005 17 N -0.472 5.472 18 C 0.166 3.834 19 C -0.603 4.603 20 H 0.052 0.948 21 C -0.039 4.039 22 N -0.934 5.934 23 Si 1.128 2.872 24 H -0.272 1.272 25 H -0.267 1.267 26 H -0.276 1.276 27 C -0.001 4.001 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.039 0.961 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.048 0.952 46 H 0.000 1.000 47 H -0.037 1.037 48 H 0.251 0.749 49 H 0.037 0.963 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 13.356 23.565 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.095 3.905 3 C -0.187 4.187 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.414 3.586 7 O -0.467 6.467 8 N -0.391 5.391 9 C -0.020 4.020 10 C -0.154 4.154 11 C 0.047 3.953 12 H 0.124 0.876 13 C -0.028 4.028 14 O -0.296 6.296 15 C 0.032 3.968 16 C -0.134 4.134 17 N -0.195 5.195 18 C 0.038 3.962 19 C -0.641 4.641 20 H 0.070 0.930 21 C -0.236 4.236 22 N -0.571 5.571 23 Si 0.948 3.052 24 H -0.198 1.198 25 H -0.192 1.192 26 H -0.201 1.201 27 C -0.131 4.131 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.018 0.982 47 H -0.020 1.020 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.242 13.285 21.629 28.181 hybrid contribution 1.538 -0.070 0.287 1.566 sum 13.780 13.214 21.916 29.066 Atomic orbital electron populations 1.22452 0.94684 1.03114 1.03396 1.22283 0.94009 0.92928 0.81315 1.21843 1.02500 0.89996 1.04382 1.22458 1.01601 1.01774 0.97920 1.86266 1.71578 1.23402 1.46939 1.17803 0.79396 0.80686 0.80694 1.91048 1.41994 1.70788 1.42842 1.48779 1.54008 1.14739 1.21538 1.23241 0.96394 1.01556 0.80856 1.23491 1.02272 0.97004 0.92597 1.23129 0.96565 0.82572 0.93060 0.87568 1.23053 0.97183 0.97812 0.84717 1.88036 1.31220 1.76600 1.33711 1.23566 0.85110 0.92142 0.95957 1.24099 0.92876 0.99929 0.96524 1.68801 1.32880 1.08759 1.09099 1.20036 0.96215 0.93725 0.86203 1.22261 0.97027 1.50454 0.94379 0.92992 1.27645 1.07726 0.93406 0.94809 1.70904 1.02433 1.45250 1.38523 0.82820 0.69787 0.77245 0.75363 1.19771 1.19219 1.20086 1.24091 0.97875 0.93434 0.97653 0.91324 0.89873 0.93081 0.90834 0.88406 0.90614 0.93322 0.89806 0.91602 0.87826 0.89163 0.87612 0.84491 0.94256 0.88505 0.85744 0.87517 0.93345 0.98238 1.01976 0.94020 0.94490 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.81 8.37 71.98 0.60 -4.21 16 2 C 0.13 3.26 1.13 -10.80 -0.01 3.24 16 3 C -0.13 -2.09 8.85 71.98 0.64 -1.45 16 4 C -0.18 -5.01 8.37 71.98 0.60 -4.41 16 5 O -0.37 -10.05 9.91 -55.45 -0.55 -10.60 16 6 C 0.66 20.55 8.17 129.79 1.06 21.61 16 7 O -0.58 -23.06 11.30 23.57 0.27 -22.79 16 8 N -0.65 -14.74 3.57 -964.26 -3.44 -18.18 16 9 C 0.10 1.11 8.64 83.17 0.72 1.83 16 10 C -0.12 -0.81 8.03 30.92 0.25 -0.56 16 11 C 0.15 2.62 4.33 41.78 0.18 2.80 16 12 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 13 C 0.05 1.12 5.23 71.98 0.38 1.50 16 14 O -0.38 -12.81 9.52 -140.96 -1.34 -14.15 16 15 C 0.09 3.24 4.65 30.94 0.14 3.38 16 16 C -0.01 -0.21 7.52 83.57 0.63 0.42 16 17 N -0.47 -23.64 6.32 -932.96 -5.89 -29.53 16 18 C 0.17 9.94 3.88 85.55 0.33 10.27 16 19 C -0.60 -38.29 9.39 25.60 0.24 -38.05 16 20 H 0.05 3.28 7.81 -2.91 -0.02 3.26 16 21 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 22 N -0.93 -61.77 13.65 21.45 0.29 -61.48 16 23 Si 1.13 53.79 29.90 68.60 2.05 55.84 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 C 0.00 -0.04 7.55 83.57 0.63 0.59 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.81 5.88 -2.39 -0.01 1.80 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.79 5.88 -2.38 -0.01 1.78 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.11 0.67 8.12 -2.38 -0.02 0.65 16 40 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.13 3.58 7.88 -2.39 -0.02 3.57 16 44 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 45 H 0.05 2.14 7.91 -2.38 -0.02 2.12 16 46 H 0.00 -0.02 7.95 -2.39 -0.02 -0.04 16 47 H -0.04 -2.44 7.17 -2.39 -0.02 -2.45 16 48 H 0.25 16.98 7.22 -92.71 -0.67 16.31 16 49 H 0.04 1.99 7.42 -2.38 -0.02 1.97 16 50 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -87.59 400.44 -0.76 -88.36 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.00 Total: 17.55 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 6.85 Total: -5.01 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -9.04 Total: -109.19 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -1.63 Total: -47.54 kcal Atomic # 14 Polarization: 53.79 SS G_CDS: 2.05 Total: 55.84 kcal Total: -87.59 -0.76 -88.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225056546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.656 kcal (2) G-P(sol) polarization free energy of solvation -87.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds