Wall clock time and date at job start Tue Mar 31 2020 15:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46927 * 2 1 4 4 H 1.08991 * 109.47190 * 183.40891 * 3 2 1 5 5 C 1.50708 * 109.47079 * 63.40815 * 3 2 1 6 6 H 1.07994 * 119.99973 * 245.41414 * 5 3 2 7 7 C 1.37882 * 119.99426 * 65.69244 * 5 3 2 8 8 N 1.31514 * 119.99451 * 192.93033 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 12.92559 * 7 5 3 10 10 H 1.48495 * 109.47309 * 86.29676 * 9 7 5 11 11 H 1.48502 * 109.46938 * 206.29921 * 9 7 5 12 12 H 1.48504 * 109.47094 * 326.29396 * 9 7 5 13 13 N 1.46904 * 109.47353 * 303.41100 * 3 2 1 14 14 C 1.46893 * 110.99963 * 273.10245 * 13 3 2 15 15 H 1.09001 * 109.67502 * 34.06275 * 14 13 3 16 16 C 1.53345 * 109.67566 * 154.60210 * 14 13 3 17 17 C 1.52937 * 108.66466 * 187.27506 * 16 14 13 18 18 N 1.45753 * 110.47761 * 309.21737 * 17 16 14 19 19 C 1.34773 * 117.94414 * 199.08421 * 18 17 16 20 20 O 1.21461 * 120.00560 * 0.02585 * 19 18 17 21 21 O 1.34590 * 120.00053 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00230 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47174 * 60.00227 * 22 21 19 24 24 C 1.52999 * 109.47382 * 180.02562 * 22 21 19 25 25 C 1.53005 * 109.47002 * 300.00299 * 22 21 19 26 26 C 1.33354 * 124.10724 * 19.11098 * 18 17 16 27 27 O 1.21237 * 118.24222 * 177.73538 * 26 18 17 28 28 C 1.50171 * 123.50860 * 357.75239 * 26 18 17 29 29 H 1.09006 * 109.46887 * 183.65423 * 1 2 3 30 30 H 1.08994 * 109.47223 * 303.65071 * 1 2 3 31 31 H 1.09000 * 109.47724 * 63.65543 * 1 2 3 32 32 H 1.09003 * 109.46963 * 240.00828 * 2 1 3 33 33 H 1.08993 * 109.47094 * 120.00393 * 2 1 3 34 34 H 0.97005 * 119.99681 * 180.02562 * 8 7 5 35 35 H 1.00898 * 111.00016 * 149.14682 * 13 3 2 36 36 H 1.08999 * 109.60288 * 307.01694 * 16 14 13 37 37 H 1.08998 * 109.60712 * 67.50190 * 16 14 13 38 38 H 1.08994 * 109.29555 * 188.91011 * 17 16 14 39 39 H 1.09004 * 109.14655 * 69.42347 * 17 16 14 40 40 H 1.08993 * 109.47214 * 59.99884 * 23 22 21 41 41 H 1.08997 * 109.46982 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.47197 * 300.00206 * 23 22 21 43 43 H 1.09005 * 109.46806 * 59.99535 * 24 22 21 44 44 H 1.08997 * 109.47158 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.47000 * 300.00361 * 24 22 21 46 46 H 1.08993 * 109.47123 * 59.99786 * 25 22 21 47 47 H 1.08999 * 109.46964 * 180.02562 * 25 22 21 48 48 H 1.09004 * 109.46516 * 299.99937 * 25 22 21 49 49 H 1.09000 * 109.40427 * 257.45483 * 28 26 18 50 50 H 1.08998 * 109.40046 * 137.71197 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1281 1.4432 -0.0611 5 6 1.6077 2.1281 1.2706 6 1 0.9129 2.9538 1.2291 7 6 2.1039 1.7048 2.4854 8 7 1.5482 2.1192 3.6030 9 14 3.5654 0.5428 2.5437 10 1 4.8246 1.3283 2.4951 11 1 3.5215 -0.2448 3.8018 12 1 3.5116 -0.3789 1.3806 13 7 1.4841 2.1584 -1.1561 14 6 2.3265 1.9726 -2.3451 15 1 2.7645 0.9745 -2.3321 16 6 1.4791 2.1490 -3.6109 17 6 2.3295 1.7736 -4.8254 18 7 3.6069 2.4745 -4.7897 19 6 4.3038 2.5762 -5.9388 20 8 3.8626 2.0920 -6.9616 21 8 5.4887 3.2144 -5.9530 22 6 6.1837 3.2861 -7.2259 23 6 5.3090 4.0206 -8.2438 24 6 7.5016 4.0421 -7.0456 25 6 6.4730 1.8705 -7.7294 26 6 4.1296 3.0210 -3.6913 27 8 5.2205 3.5435 -3.7738 28 6 3.4394 3.0235 -2.3576 29 1 -0.3633 -1.0256 0.0655 30 1 -0.3633 0.5694 0.8554 31 1 -0.3634 0.4560 -0.9209 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.8975 1.8217 4.4577 35 1 1.3612 3.1384 -0.9497 36 1 0.6064 1.4979 -3.5604 37 1 1.1591 3.1875 -3.6951 38 1 1.7955 2.0438 -5.7363 39 1 2.5082 0.6983 -4.8181 40 1 5.1028 5.0290 -7.8852 41 1 5.8305 4.0740 -9.1995 42 1 4.3702 3.4816 -8.3722 43 1 8.1245 3.5185 -6.3204 44 1 8.0234 4.0955 -8.0010 45 1 7.2958 5.0506 -6.6867 46 1 5.5344 1.3316 -7.8577 47 1 6.9951 1.9244 -8.6847 48 1 7.0962 1.3473 -7.0040 49 1 3.0095 4.0083 -2.1742 50 1 4.1627 2.7942 -1.5752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254238981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:09 Heat of formation + Delta-G solvation = -110.014071 kcal Electronic energy + Delta-G solvation = -29715.233474 eV Core-core repulsion = 25743.038266 eV Total energy + Delta-G solvation = -3972.195208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.97900 -39.93118 -37.67995 -37.37790 -35.62630 -34.36638 -33.54768 -31.82400 -30.33318 -29.34503 -27.62085 -27.60571 -26.76406 -24.53236 -23.66732 -23.13909 -21.93738 -20.44160 -19.35916 -19.00266 -18.03125 -17.19438 -17.03200 -16.57086 -15.98980 -15.42556 -15.24176 -15.16683 -14.56728 -14.52862 -14.15690 -13.90754 -13.76983 -13.68100 -13.51027 -13.11683 -12.69225 -12.67111 -12.43440 -12.21864 -12.15847 -12.11559 -12.06730 -11.83584 -11.69029 -11.64486 -11.24276 -11.20609 -10.94294 -10.75550 -10.55003 -10.50591 -10.40484 -10.27873 -10.06060 -9.91583 -9.72921 -9.30578 -9.11723 -8.52273 -7.66466 -6.18393 -4.14954 1.74103 1.83933 2.89003 3.22313 3.31036 3.34198 3.42324 4.32099 4.34688 4.48384 4.53053 4.55005 4.68189 4.70416 4.78929 5.12173 5.16586 5.20628 5.24832 5.29586 5.30039 5.41614 5.48568 5.51163 5.56816 5.60832 5.70269 5.76842 5.83693 5.89234 6.02182 6.02419 6.07763 6.12921 6.16503 6.27007 6.39038 6.46290 6.65769 6.74989 6.88124 7.08391 7.20208 7.46023 7.57715 7.69742 7.78122 7.95629 8.17835 8.50324 8.88765 9.46398 10.94350 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.003034 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.377508 B = 9227.660110 C = 9840.327038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.189 3.811 4 H -0.002 1.002 5 C -0.522 4.522 6 H 0.078 0.922 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.859 3.141 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.664 5.664 14 C 0.082 3.918 15 H 0.082 0.918 16 C -0.123 4.123 17 C 0.113 3.887 18 N -0.542 5.542 19 C 0.647 3.353 20 O -0.543 6.543 21 O -0.313 6.313 22 C 0.120 3.880 23 C -0.182 4.182 24 C -0.137 4.137 25 C -0.182 4.182 26 C 0.518 3.482 27 O -0.486 6.486 28 C -0.162 4.162 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.023 0.977 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.343 0.657 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.111 0.889 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 0.766 -21.243 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.150 4.150 3 C 0.080 3.920 4 H 0.015 0.985 5 C -0.560 4.560 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.686 3.314 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.175 1.175 13 N -0.294 5.294 14 C -0.030 4.030 15 H 0.100 0.900 16 C -0.161 4.161 17 C -0.008 4.008 18 N -0.292 5.292 19 C 0.404 3.596 20 O -0.431 6.431 21 O -0.226 6.226 22 C 0.083 3.917 23 C -0.239 4.239 24 C -0.194 4.194 25 C -0.240 4.240 26 C 0.307 3.693 27 O -0.357 6.357 28 C -0.203 4.203 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.129 0.871 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.708 0.425 -21.541 22.288 hybrid contribution 1.590 -0.125 0.418 1.649 sum 7.297 0.300 -21.122 22.349 Atomic orbital electron populations 1.21457 0.95849 0.98187 1.02641 1.21863 0.96986 0.97724 0.98449 1.19509 0.92026 0.91611 0.88840 0.98484 1.20952 1.28210 1.18102 0.88735 0.90385 1.24857 0.96406 0.95603 0.95531 1.69943 1.39642 1.45396 0.97707 0.87332 0.83878 0.81975 0.78195 1.20587 1.21394 1.17543 1.60624 1.47627 1.17204 1.03926 1.21769 0.90775 0.97742 0.92719 0.89965 1.21984 0.98802 1.03665 0.91681 1.21734 0.80903 0.96866 1.01285 1.45895 1.22095 1.53791 1.07455 1.18598 0.80458 0.76953 0.83561 1.90891 1.70593 1.50311 1.31326 1.86888 1.30129 1.69342 1.36225 1.22239 0.92004 0.96611 0.80835 1.22501 1.01940 1.00857 0.98625 1.21802 0.94072 1.00803 1.02744 1.22504 1.03985 0.95843 1.01629 1.20979 0.86007 0.76275 0.86018 1.90824 1.19728 1.40700 1.84423 1.22650 1.01138 1.03886 0.92629 0.96243 0.91524 0.92966 0.95781 0.92824 0.92574 0.83752 0.87811 0.90734 0.88700 0.90065 0.92083 0.91074 0.89672 0.91356 0.90351 0.91377 0.89662 0.91077 0.92067 0.87080 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.51 37.16 0.35 -2.03 16 2 C -0.11 -2.26 5.12 -26.73 -0.14 -2.40 16 3 C 0.19 3.91 1.68 -68.86 -0.12 3.79 16 4 H 0.00 -0.05 6.10 -51.93 -0.32 -0.37 16 5 C -0.52 -13.15 7.84 -34.43 -0.27 -13.42 16 6 H 0.08 2.14 7.89 -52.49 -0.41 1.73 16 7 C 0.08 2.13 5.37 -17.82 -0.10 2.03 16 8 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 9 Si 0.86 20.15 25.86 -169.99 -4.40 15.75 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.25 -5.52 5.30 56.52 0.30 -5.22 16 13 N -0.66 -11.04 5.24 -100.73 -0.53 -11.56 16 14 C 0.08 1.10 2.34 -67.50 -0.16 0.94 16 15 H 0.08 1.17 7.29 -51.93 -0.38 0.80 16 16 C -0.12 -1.29 5.64 -26.58 -0.15 -1.44 16 17 C 0.11 1.18 5.91 -4.48 -0.03 1.15 16 18 N -0.54 -7.16 2.92 -121.98 -0.36 -7.52 16 19 C 0.65 9.27 7.54 54.05 0.41 9.68 16 20 O -0.54 -7.81 11.43 -19.24 -0.22 -8.03 16 21 O -0.31 -4.58 7.09 -48.37 -0.34 -4.92 16 22 C 0.12 1.35 1.13 -90.62 -0.10 1.25 16 23 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 24 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 25 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 26 C 0.52 7.55 7.41 -11.87 -0.09 7.46 16 27 O -0.49 -8.51 14.78 -19.04 -0.28 -8.79 16 28 C -0.16 -2.19 5.35 -28.10 -0.15 -2.34 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 1.46 7.21 -51.93 -0.37 1.09 16 31 H 0.05 0.92 7.64 -51.93 -0.40 0.53 16 32 H 0.02 0.43 7.63 -51.93 -0.40 0.04 16 33 H 0.05 1.17 4.68 -51.93 -0.24 0.93 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.34 5.73 7.79 -39.29 -0.31 5.42 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.09 0.91 7.60 -51.93 -0.39 0.52 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.99 5.88 -51.93 -0.31 0.69 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.02 5.88 -51.93 -0.31 0.71 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.11 1.39 7.90 -51.93 -0.41 0.98 16 50 H 0.11 1.65 7.74 -51.93 -0.40 1.24 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -30.11 380.29 -7.73 -37.84 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.53 Total: 5.78 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.42 Total: 0.67 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.11 Total: -44.03 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.84 Total: -21.75 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.40 Total: 15.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.11 -7.73 -37.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254238981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.171 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds