Wall clock time and date at job start Tue Mar 31 2020 15:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46927 * 2 1 4 4 H 1.08991 * 109.47190 * 183.40891 * 3 2 1 5 5 C 1.50708 * 109.47079 * 63.40815 * 3 2 1 6 6 H 1.07994 * 119.99973 * 245.41414 * 5 3 2 7 7 C 1.37882 * 119.99426 * 65.69244 * 5 3 2 8 8 N 1.31514 * 119.99451 * 192.93033 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 12.92559 * 7 5 3 10 10 H 1.48495 * 109.47309 * 86.29676 * 9 7 5 11 11 H 1.48502 * 109.46938 * 206.29921 * 9 7 5 12 12 H 1.48504 * 109.47094 * 326.29396 * 9 7 5 13 13 N 1.46904 * 109.47353 * 303.41100 * 3 2 1 14 14 C 1.46893 * 110.99963 * 273.10245 * 13 3 2 15 15 H 1.09001 * 109.67502 * 34.06275 * 14 13 3 16 16 C 1.53345 * 109.67566 * 154.60210 * 14 13 3 17 17 C 1.52937 * 108.66466 * 187.27506 * 16 14 13 18 18 N 1.45753 * 110.47761 * 309.21737 * 17 16 14 19 19 C 1.34773 * 117.94414 * 199.08421 * 18 17 16 20 20 O 1.21461 * 120.00560 * 0.02585 * 19 18 17 21 21 O 1.34590 * 120.00053 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00230 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47174 * 60.00227 * 22 21 19 24 24 C 1.52999 * 109.47382 * 180.02562 * 22 21 19 25 25 C 1.53005 * 109.47002 * 300.00299 * 22 21 19 26 26 C 1.33354 * 124.10724 * 19.11098 * 18 17 16 27 27 O 1.21237 * 118.24222 * 177.73538 * 26 18 17 28 28 C 1.50171 * 123.50860 * 357.75239 * 26 18 17 29 29 H 1.09006 * 109.46887 * 183.65423 * 1 2 3 30 30 H 1.08994 * 109.47223 * 303.65071 * 1 2 3 31 31 H 1.09000 * 109.47724 * 63.65543 * 1 2 3 32 32 H 1.09003 * 109.46963 * 240.00828 * 2 1 3 33 33 H 1.08993 * 109.47094 * 120.00393 * 2 1 3 34 34 H 0.97005 * 119.99681 * 180.02562 * 8 7 5 35 35 H 1.00898 * 111.00016 * 149.14682 * 13 3 2 36 36 H 1.08999 * 109.60288 * 307.01694 * 16 14 13 37 37 H 1.08998 * 109.60712 * 67.50190 * 16 14 13 38 38 H 1.08994 * 109.29555 * 188.91011 * 17 16 14 39 39 H 1.09004 * 109.14655 * 69.42347 * 17 16 14 40 40 H 1.08993 * 109.47214 * 59.99884 * 23 22 21 41 41 H 1.08997 * 109.46982 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.47197 * 300.00206 * 23 22 21 43 43 H 1.09005 * 109.46806 * 59.99535 * 24 22 21 44 44 H 1.08997 * 109.47158 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.47000 * 300.00361 * 24 22 21 46 46 H 1.08993 * 109.47123 * 59.99786 * 25 22 21 47 47 H 1.08999 * 109.46964 * 180.02562 * 25 22 21 48 48 H 1.09004 * 109.46516 * 299.99937 * 25 22 21 49 49 H 1.09000 * 109.40427 * 257.45483 * 28 26 18 50 50 H 1.08998 * 109.40046 * 137.71197 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1281 1.4432 -0.0611 5 6 1.6077 2.1281 1.2706 6 1 0.9129 2.9538 1.2291 7 6 2.1039 1.7048 2.4854 8 7 1.5482 2.1192 3.6030 9 14 3.5654 0.5428 2.5437 10 1 4.8246 1.3283 2.4951 11 1 3.5215 -0.2448 3.8018 12 1 3.5116 -0.3789 1.3806 13 7 1.4841 2.1584 -1.1561 14 6 2.3265 1.9726 -2.3451 15 1 2.7645 0.9745 -2.3321 16 6 1.4791 2.1490 -3.6109 17 6 2.3295 1.7736 -4.8254 18 7 3.6069 2.4745 -4.7897 19 6 4.3038 2.5762 -5.9388 20 8 3.8626 2.0920 -6.9616 21 8 5.4887 3.2144 -5.9530 22 6 6.1837 3.2861 -7.2259 23 6 5.3090 4.0206 -8.2438 24 6 7.5016 4.0421 -7.0456 25 6 6.4730 1.8705 -7.7294 26 6 4.1296 3.0210 -3.6913 27 8 5.2205 3.5435 -3.7738 28 6 3.4394 3.0235 -2.3576 29 1 -0.3633 -1.0256 0.0655 30 1 -0.3633 0.5694 0.8554 31 1 -0.3634 0.4560 -0.9209 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.8975 1.8217 4.4577 35 1 1.3612 3.1384 -0.9497 36 1 0.6064 1.4979 -3.5604 37 1 1.1591 3.1875 -3.6951 38 1 1.7955 2.0438 -5.7363 39 1 2.5082 0.6983 -4.8181 40 1 5.1028 5.0290 -7.8852 41 1 5.8305 4.0740 -9.1995 42 1 4.3702 3.4816 -8.3722 43 1 8.1245 3.5185 -6.3204 44 1 8.0234 4.0955 -8.0010 45 1 7.2958 5.0506 -6.6867 46 1 5.5344 1.3316 -7.8577 47 1 6.9951 1.9244 -8.6847 48 1 7.0962 1.3473 -7.0040 49 1 3.0095 4.0083 -2.1742 50 1 4.1627 2.7942 -1.5752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254238981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:07 Heat of formation + Delta-G solvation = -128.666106 kcal Electronic energy + Delta-G solvation = -29716.042287 eV Core-core repulsion = 25743.038266 eV Total energy + Delta-G solvation = -3973.004021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.03818 -40.97892 -38.90491 -38.53112 -36.86242 -35.47447 -34.78090 -33.66609 -31.50160 -30.56738 -28.47353 -28.40374 -28.34926 -25.68204 -24.82040 -24.73014 -23.04648 -21.40824 -20.96496 -20.03800 -19.15109 -18.51029 -18.18929 -17.97748 -17.12050 -16.91709 -16.33512 -16.19888 -15.74455 -15.56947 -15.37731 -15.16394 -15.04633 -14.90953 -14.61655 -14.58038 -14.44430 -13.65936 -13.44198 -13.22322 -13.20435 -12.99008 -12.96120 -12.91885 -12.88101 -12.65332 -12.53613 -12.49305 -12.38608 -12.23476 -12.02123 -11.80183 -11.64560 -11.44783 -11.37953 -11.16742 -11.01457 -10.94525 -10.74731 -10.49049 -9.07672 -8.25671 -6.23597 0.61608 0.87707 1.35015 1.40642 1.45985 1.80629 2.37562 2.42656 3.10427 3.21969 3.49228 3.67685 3.70882 3.75329 3.79388 3.90824 4.04567 4.26406 4.32731 4.41793 4.50049 4.55749 4.58044 4.64574 4.66562 4.70194 4.71986 4.78635 4.82506 4.82740 4.87976 4.92636 5.08928 5.10102 5.12689 5.22671 5.24063 5.27615 5.30695 5.46381 5.49443 5.51302 5.61702 5.81117 5.90371 6.05850 6.54022 6.59360 6.72780 6.91253 6.92822 7.41411 8.90622 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.003034 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.377508 B = 9227.660110 C = 9840.327038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C 0.193 3.807 4 H -0.005 1.005 5 C -0.509 4.509 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.942 5.942 9 Si 0.912 3.088 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.223 1.223 13 N -0.658 5.658 14 C 0.085 3.915 15 H 0.081 0.919 16 C -0.110 4.110 17 C 0.112 3.888 18 N -0.540 5.540 19 C 0.641 3.359 20 O -0.546 6.546 21 O -0.334 6.334 22 C 0.105 3.895 23 C -0.176 4.176 24 C -0.133 4.133 25 C -0.177 4.177 26 C 0.524 3.476 27 O -0.520 6.520 28 C -0.155 4.155 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.342 0.658 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.054 0.946 49 H 0.121 0.879 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -0.323 -24.140 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.153 4.153 3 C 0.084 3.916 4 H 0.013 0.987 5 C -0.547 4.547 6 H 0.062 0.938 7 C -0.175 4.175 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.208 1.208 11 H -0.221 1.221 12 H -0.146 1.146 13 N -0.288 5.288 14 C -0.027 4.027 15 H 0.099 0.901 16 C -0.148 4.148 17 C -0.007 4.007 18 N -0.290 5.290 19 C 0.399 3.601 20 O -0.435 6.435 21 O -0.248 6.248 22 C 0.069 3.931 23 C -0.233 4.233 24 C -0.190 4.190 25 C -0.234 4.234 26 C 0.314 3.686 27 O -0.394 6.394 28 C -0.196 4.196 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.074 0.926 49 H 0.139 0.861 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.202 -0.682 -24.487 25.270 hybrid contribution 1.389 0.284 1.226 1.874 sum 7.591 -0.398 -23.262 24.472 Atomic orbital electron populations 1.21352 0.95208 0.98981 1.01729 1.21834 0.97573 0.96908 0.98941 1.19338 0.91840 0.92209 0.88238 0.98711 1.21239 1.26142 1.16647 0.90682 0.93802 1.25603 0.98932 0.97623 0.95336 1.70085 1.41739 1.48012 0.98344 0.86471 0.80424 0.80562 0.78820 1.20755 1.22096 1.14592 1.60570 1.47932 1.16859 1.03447 1.21835 0.90793 0.97524 0.92515 0.90060 1.21893 0.98499 1.04693 0.89697 1.21927 0.79778 0.97274 1.01735 1.45964 1.22730 1.53438 1.06831 1.18743 0.80608 0.77020 0.83752 1.90888 1.70727 1.50471 1.31385 1.86880 1.30303 1.69293 1.38277 1.22652 0.92736 0.97624 0.80093 1.22445 1.01219 1.00081 0.99525 1.21839 0.93120 0.99905 1.04182 1.22453 1.03194 0.94934 1.02783 1.21034 0.85461 0.75660 0.86416 1.90812 1.21206 1.42323 1.85023 1.22574 1.00762 1.04571 0.91738 0.94244 0.95266 0.91326 0.92872 0.94574 0.92884 0.83851 0.86341 0.89870 0.87398 0.88907 0.92418 0.88456 0.91394 0.92192 0.87306 0.92001 0.91419 0.88417 0.92643 0.86067 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 9.51 71.98 0.68 -3.51 16 2 C -0.11 -4.33 5.12 30.59 0.16 -4.17 16 3 C 0.19 7.74 1.68 44.17 0.07 7.81 16 4 H 0.00 -0.19 6.10 -2.39 -0.01 -0.21 16 5 C -0.51 -25.97 7.84 25.60 0.20 -25.77 16 6 H 0.04 2.49 7.89 -2.91 -0.02 2.47 16 7 C 0.02 1.27 5.37 84.66 0.45 1.72 16 8 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 9 Si 0.91 41.61 25.86 68.60 1.77 43.38 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.22 -9.10 5.30 99.48 0.53 -8.57 16 13 N -0.66 -20.70 5.24 -472.59 -2.48 -23.17 16 14 C 0.08 2.06 2.34 45.06 0.11 2.17 16 15 H 0.08 2.06 7.29 -2.39 -0.02 2.04 16 16 C -0.11 -1.94 5.64 30.69 0.17 -1.76 16 17 C 0.11 2.02 5.91 86.50 0.51 2.53 16 18 N -0.54 -13.36 2.92 -889.50 -2.60 -15.95 16 19 C 0.64 17.65 7.54 129.79 0.98 18.62 16 20 O -0.55 -14.95 11.43 19.97 0.23 -14.72 16 21 O -0.33 -9.57 7.09 -47.16 -0.33 -9.91 16 22 C 0.11 2.22 1.13 -10.79 -0.01 2.21 16 23 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 24 C -0.13 -2.23 8.85 71.98 0.64 -1.59 16 25 C -0.18 -3.34 8.37 71.98 0.60 -2.73 16 26 C 0.52 14.72 7.41 87.71 0.65 15.37 16 27 O -0.52 -18.12 14.78 20.65 0.31 -17.82 16 28 C -0.16 -4.01 5.35 29.71 0.16 -3.85 16 29 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.03 1.26 7.21 -2.39 -0.02 1.24 16 31 H 0.07 2.24 7.64 -2.39 -0.02 2.22 16 32 H 0.05 1.72 7.63 -2.39 -0.02 1.71 16 33 H 0.04 1.49 4.68 -2.39 -0.01 1.48 16 34 H 0.26 14.94 8.31 -92.70 -0.77 14.16 16 35 H 0.34 11.07 7.79 -89.70 -0.70 10.37 16 36 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 38 H 0.11 1.74 7.60 -2.39 -0.02 1.72 16 39 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.49 5.88 -2.38 -0.01 1.48 16 43 H 0.06 1.09 8.14 -2.38 -0.02 1.08 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.07 1.53 5.88 -2.39 -0.01 1.52 16 47 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.12 2.88 7.90 -2.39 -0.02 2.86 16 50 H 0.09 2.78 7.74 -2.39 -0.02 2.76 16 Total: -1.00 -67.09 380.29 3.24 -63.86 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.06 Total: 25.92 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.98 Total: 4.43 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -4.77 Total: -95.15 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: 0.20 Total: -42.44 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.77 Total: 43.38 kcal Total: -67.09 3.24 -63.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254238981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.808 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds