Wall clock time and date at job start Tue Mar 31 2020 15:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 H 1.09002 * 109.47316 * 305.93605 * 3 2 1 5 5 C 1.50706 * 109.47354 * 185.93238 * 3 2 1 6 6 H 1.07998 * 119.99815 * 242.86970 * 5 3 2 7 7 C 1.37875 * 119.99622 * 62.86981 * 5 3 2 8 8 N 1.31522 * 119.99405 * 195.12641 * 7 5 3 9 9 Si 1.86794 * 120.00305 * 15.12072 * 7 5 3 10 10 H 1.48504 * 109.46998 * 90.94171 * 9 7 5 11 11 H 1.48500 * 109.47148 * 210.93848 * 9 7 5 12 12 H 1.48494 * 109.47339 * 330.93871 * 9 7 5 13 13 N 1.46897 * 109.46902 * 65.93118 * 3 2 1 14 14 C 1.46898 * 111.00127 * 202.92783 * 13 3 2 15 15 H 1.08998 * 109.67567 * 325.89159 * 14 13 3 16 16 C 1.53347 * 109.67752 * 205.35469 * 14 13 3 17 17 C 1.52930 * 108.66291 * 172.72746 * 16 14 13 18 18 N 1.45750 * 110.48403 * 50.78262 * 17 16 14 19 19 C 1.34775 * 117.95025 * 160.90872 * 18 17 16 20 20 O 1.21458 * 119.99776 * 359.97438 * 19 18 17 21 21 O 1.34594 * 120.00209 * 179.97438 * 19 18 17 22 22 C 1.45194 * 116.99917 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47295 * 60.00096 * 22 21 19 24 24 C 1.53002 * 109.46919 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.47193 * 299.99937 * 22 21 19 26 26 C 1.33356 * 124.10672 * 340.88899 * 18 17 16 27 27 O 1.21230 * 118.25172 * 182.22790 * 26 18 17 28 28 C 1.50177 * 123.50533 * 2.23998 * 26 18 17 29 29 H 1.09003 * 109.47353 * 64.68887 * 1 2 3 30 30 H 1.09007 * 109.47118 * 184.68330 * 1 2 3 31 31 H 1.08993 * 109.47280 * 304.68095 * 1 2 3 32 32 H 1.09001 * 109.47252 * 240.00257 * 2 1 3 33 33 H 1.09002 * 109.47528 * 120.00264 * 2 1 3 34 34 H 0.96997 * 119.99287 * 179.97438 * 8 7 5 35 35 H 1.00905 * 110.99718 * 78.97768 * 13 3 2 36 36 H 1.09008 * 109.59949 * 292.49364 * 16 14 13 37 37 H 1.08996 * 109.60235 * 52.97866 * 16 14 13 38 38 H 1.09000 * 109.31666 * 290.46042 * 17 16 14 39 39 H 1.09005 * 109.12629 * 170.98116 * 17 16 14 40 40 H 1.08999 * 109.47057 * 59.99906 * 23 22 21 41 41 H 1.08997 * 109.47155 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47225 * 299.99742 * 23 22 21 43 43 H 1.09000 * 109.47313 * 60.00103 * 24 22 21 44 44 H 1.09002 * 109.46999 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47234 * 299.99971 * 24 22 21 46 46 H 1.09005 * 109.47032 * 60.00266 * 25 22 21 47 47 H 1.09002 * 109.47500 * 180.02562 * 25 22 21 48 48 H 1.08998 * 109.47287 * 300.00490 * 25 22 21 49 49 H 1.08995 * 109.40341 * 222.28799 * 28 26 18 50 50 H 1.09004 * 109.32655 * 102.50338 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5924 1.9861 -0.8321 5 6 3.5398 1.4451 -0.1469 6 1 4.1590 1.8436 0.6432 7 6 4.1214 0.9387 -1.2898 8 7 5.4074 0.6635 -1.3066 9 14 3.0829 0.6434 -2.8141 10 1 3.0990 1.8589 -3.6671 11 1 3.6379 -0.5037 -3.5766 12 1 1.6864 0.3402 -2.4106 13 7 1.6706 2.0924 1.2646 14 6 1.6371 3.5534 1.1155 15 1 2.4057 3.8680 0.4095 16 6 1.8821 4.2170 2.4761 17 6 2.0239 5.7252 2.2665 18 7 0.9094 6.2378 1.4794 19 6 0.6577 7.5609 1.5277 20 8 1.3503 8.2862 2.2128 21 8 -0.3611 8.0786 0.8166 22 6 -0.5733 9.5115 0.9161 23 6 0.6791 10.2471 0.4352 24 6 -1.7663 9.9120 0.0459 25 6 -0.8567 9.8852 2.3724 26 6 0.1233 5.4796 0.7141 27 8 -0.7489 6.0235 0.0713 28 6 0.2606 3.9880 0.6061 29 1 -0.3634 0.4394 -0.9290 30 1 -0.3634 -1.0243 0.0839 31 1 -0.3633 0.5847 0.8450 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8164 0.3069 -2.1106 35 1 2.2960 1.8190 2.0077 36 1 1.0391 4.0170 3.1376 37 1 2.7974 3.8214 2.9163 38 1 2.9583 5.9304 1.7442 39 1 2.0375 6.2210 3.2372 40 1 0.8810 9.9808 -0.6023 41 1 0.5196 11.3228 0.5094 42 1 1.5287 9.9617 1.0555 43 1 -2.6584 9.3879 0.3888 44 1 -1.9259 10.9876 0.1209 45 1 -1.5649 9.6456 -0.9917 46 1 -0.0070 9.5998 2.9927 47 1 -1.0164 10.9609 2.4470 48 1 -1.7489 9.3611 2.7150 49 1 0.1490 3.6886 -0.4359 50 1 -0.5146 3.5101 1.2052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254238983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:13 Heat of formation + Delta-G solvation = -113.211457 kcal Electronic energy + Delta-G solvation = -29793.368159 eV Core-core repulsion = 25821.034302 eV Total energy + Delta-G solvation = -3972.333857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.88511 -39.83214 -37.59651 -37.24692 -35.55211 -34.29846 -33.44634 -31.99704 -30.21502 -29.63737 -27.56507 -27.55014 -26.88152 -24.48115 -23.64420 -22.60428 -21.59383 -20.36398 -19.75098 -18.86149 -17.83667 -17.33067 -16.87242 -16.85107 -15.87081 -15.41108 -15.18684 -14.95416 -14.68120 -14.48134 -14.03678 -13.97850 -13.73430 -13.66162 -13.28277 -12.98607 -12.70995 -12.59342 -12.37843 -12.32799 -12.09370 -12.04951 -11.85234 -11.71072 -11.62460 -11.60627 -11.52887 -11.21287 -10.89452 -10.82196 -10.56380 -10.48189 -10.37888 -10.23296 -9.90977 -9.77458 -9.63519 -9.59956 -9.25173 -8.54876 -7.56790 -6.22913 -4.20291 1.83386 1.92108 2.98597 3.21928 3.32121 3.35501 3.51519 4.32621 4.41079 4.54349 4.60015 4.62156 4.74196 4.76494 4.91107 5.09812 5.23630 5.29485 5.32821 5.35634 5.47481 5.53527 5.56968 5.62007 5.66782 5.68889 5.81773 5.84681 5.90216 5.93988 6.03152 6.08036 6.08420 6.11013 6.14863 6.28241 6.39026 6.47811 6.63310 6.74430 6.75324 6.95180 7.10739 7.27441 7.49589 7.78972 7.87300 8.03970 8.23535 8.36303 8.81847 9.43787 10.89764 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.003134 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.242723 B = 8931.296972 C = 8968.813578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.187 3.813 4 H 0.028 0.972 5 C -0.556 4.556 6 H 0.072 0.928 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.673 5.673 14 C 0.084 3.916 15 H 0.066 0.934 16 C -0.135 4.135 17 C 0.115 3.885 18 N -0.542 5.542 19 C 0.647 3.353 20 O -0.543 6.543 21 O -0.313 6.313 22 C 0.120 3.880 23 C -0.183 4.183 24 C -0.137 4.137 25 C -0.182 4.182 26 C 0.517 3.483 27 O -0.488 6.488 28 C -0.120 4.120 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.340 0.660 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 13.782 6.936 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C 0.078 3.922 4 H 0.046 0.954 5 C -0.594 4.594 6 H 0.090 0.910 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.686 3.314 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.303 5.303 14 C -0.027 4.027 15 H 0.084 0.916 16 C -0.173 4.173 17 C -0.006 4.006 18 N -0.292 5.292 19 C 0.405 3.595 20 O -0.432 6.432 21 O -0.226 6.226 22 C 0.083 3.917 23 C -0.240 4.240 24 C -0.194 4.194 25 C -0.239 4.239 26 C 0.307 3.693 27 O -0.359 6.359 28 C -0.160 4.160 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.124 0.876 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.377 14.186 6.532 19.928 hybrid contribution 0.844 0.020 -0.986 1.298 sum -11.534 14.206 5.546 19.121 Atomic orbital electron populations 1.21764 0.97933 0.99483 1.01048 1.21847 0.93381 0.98885 1.00866 1.19534 0.94298 0.90946 0.87410 0.95393 1.21648 0.90523 1.42572 1.04654 0.91045 1.24945 0.94697 0.93895 0.98843 1.69991 1.11509 1.42430 1.28584 0.87290 0.82531 0.78046 0.83500 1.20731 1.21360 1.16952 1.60782 1.56774 1.03482 1.09311 1.21475 0.94817 0.90958 0.95439 0.91578 1.22142 1.04306 0.92041 0.98772 1.21666 0.87165 0.95430 0.96297 1.45881 1.32510 1.05270 1.45500 1.18591 0.79681 0.83015 0.78262 1.90889 1.50749 1.58288 1.43241 1.86884 1.46696 1.25705 1.63268 1.22227 0.96500 0.76308 0.96661 1.22504 0.98530 1.00590 1.02383 1.21797 0.96299 1.01260 1.00022 1.22504 1.03517 1.02235 0.95657 1.21079 0.79925 0.91154 0.77116 1.90811 1.31641 1.72834 1.40646 1.21799 1.01063 0.87591 1.05533 0.94387 0.94912 0.92045 0.92832 0.92851 0.92619 0.84122 0.90222 0.88555 0.89792 0.88795 0.92015 0.91121 0.89631 0.91425 0.90402 0.91340 0.89657 0.91122 0.92130 0.87592 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.86 37.15 0.37 -2.08 16 2 C -0.11 -2.23 4.83 -26.73 -0.13 -2.36 16 3 C 0.19 3.87 1.35 -68.86 -0.09 3.78 16 4 H 0.03 0.61 6.18 -51.93 -0.32 0.29 16 5 C -0.56 -14.00 8.64 -34.44 -0.30 -14.30 16 6 H 0.07 1.95 8.00 -52.49 -0.42 1.53 16 7 C 0.08 2.16 5.33 -17.82 -0.09 2.06 16 8 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 9 Si 0.86 20.17 25.76 -169.99 -4.38 15.80 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.25 -5.37 5.39 56.52 0.30 -5.07 16 13 N -0.67 -11.24 5.47 -100.72 -0.55 -11.79 16 14 C 0.08 1.25 2.36 -67.50 -0.16 1.09 16 15 H 0.07 1.16 7.55 -51.93 -0.39 0.77 16 16 C -0.13 -1.54 5.37 -26.59 -0.14 -1.68 16 17 C 0.12 1.36 5.91 -4.48 -0.03 1.33 16 18 N -0.54 -7.70 2.92 -121.98 -0.36 -8.06 16 19 C 0.65 9.83 7.54 54.05 0.41 10.23 16 20 O -0.54 -8.32 11.43 -19.24 -0.22 -8.54 16 21 O -0.31 -4.76 7.09 -48.39 -0.34 -5.10 16 22 C 0.12 1.41 1.13 -90.62 -0.10 1.31 16 23 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 24 C -0.14 -1.30 8.85 37.16 0.33 -0.97 16 25 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 26 C 0.52 7.92 7.41 -11.87 -0.09 7.83 16 27 O -0.49 -8.72 14.78 -19.03 -0.28 -9.00 16 28 C -0.12 -1.71 5.49 -28.10 -0.15 -1.86 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.98 7.66 -51.93 -0.40 0.58 16 32 H 0.05 1.16 4.67 -51.93 -0.24 0.91 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.34 5.64 8.00 -39.29 -0.31 5.33 16 36 H 0.08 0.83 8.12 -51.92 -0.42 0.41 16 37 H 0.10 1.03 7.99 -51.93 -0.42 0.62 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.00 7.61 -51.93 -0.40 0.61 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.10 5.88 -51.93 -0.31 0.79 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.04 5.88 -51.93 -0.31 0.73 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.11 1.62 7.70 -51.93 -0.40 1.22 16 50 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -30.15 383.08 -7.78 -37.93 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.64 Total: 6.90 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 0.44 Total: 1.08 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.13 Total: -44.84 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.84 Total: -22.65 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.38 Total: 15.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.15 -7.78 -37.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254238983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.280 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds