Wall clock time and date at job start Tue Mar 31 2020 15:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 H 1.09002 * 109.47316 * 305.93605 * 3 2 1 5 5 C 1.50706 * 109.47354 * 185.93238 * 3 2 1 6 6 H 1.07998 * 119.99815 * 242.86970 * 5 3 2 7 7 C 1.37875 * 119.99622 * 62.86981 * 5 3 2 8 8 N 1.31522 * 119.99405 * 195.12641 * 7 5 3 9 9 Si 1.86794 * 120.00305 * 15.12072 * 7 5 3 10 10 H 1.48504 * 109.46998 * 90.94171 * 9 7 5 11 11 H 1.48500 * 109.47148 * 210.93848 * 9 7 5 12 12 H 1.48494 * 109.47339 * 330.93871 * 9 7 5 13 13 N 1.46897 * 109.46902 * 65.93118 * 3 2 1 14 14 C 1.46898 * 111.00127 * 202.92783 * 13 3 2 15 15 H 1.08998 * 109.67567 * 325.89159 * 14 13 3 16 16 C 1.53347 * 109.67752 * 205.35469 * 14 13 3 17 17 C 1.52930 * 108.66291 * 172.72746 * 16 14 13 18 18 N 1.45750 * 110.48403 * 50.78262 * 17 16 14 19 19 C 1.34775 * 117.95025 * 160.90872 * 18 17 16 20 20 O 1.21458 * 119.99776 * 359.97438 * 19 18 17 21 21 O 1.34594 * 120.00209 * 179.97438 * 19 18 17 22 22 C 1.45194 * 116.99917 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47295 * 60.00096 * 22 21 19 24 24 C 1.53002 * 109.46919 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.47193 * 299.99937 * 22 21 19 26 26 C 1.33356 * 124.10672 * 340.88899 * 18 17 16 27 27 O 1.21230 * 118.25172 * 182.22790 * 26 18 17 28 28 C 1.50177 * 123.50533 * 2.23998 * 26 18 17 29 29 H 1.09003 * 109.47353 * 64.68887 * 1 2 3 30 30 H 1.09007 * 109.47118 * 184.68330 * 1 2 3 31 31 H 1.08993 * 109.47280 * 304.68095 * 1 2 3 32 32 H 1.09001 * 109.47252 * 240.00257 * 2 1 3 33 33 H 1.09002 * 109.47528 * 120.00264 * 2 1 3 34 34 H 0.96997 * 119.99287 * 179.97438 * 8 7 5 35 35 H 1.00905 * 110.99718 * 78.97768 * 13 3 2 36 36 H 1.09008 * 109.59949 * 292.49364 * 16 14 13 37 37 H 1.08996 * 109.60235 * 52.97866 * 16 14 13 38 38 H 1.09000 * 109.31666 * 290.46042 * 17 16 14 39 39 H 1.09005 * 109.12629 * 170.98116 * 17 16 14 40 40 H 1.08999 * 109.47057 * 59.99906 * 23 22 21 41 41 H 1.08997 * 109.47155 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47225 * 299.99742 * 23 22 21 43 43 H 1.09000 * 109.47313 * 60.00103 * 24 22 21 44 44 H 1.09002 * 109.46999 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47234 * 299.99971 * 24 22 21 46 46 H 1.09005 * 109.47032 * 60.00266 * 25 22 21 47 47 H 1.09002 * 109.47500 * 180.02562 * 25 22 21 48 48 H 1.08998 * 109.47287 * 300.00490 * 25 22 21 49 49 H 1.08995 * 109.40341 * 222.28799 * 28 26 18 50 50 H 1.09004 * 109.32655 * 102.50338 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5924 1.9861 -0.8321 5 6 3.5398 1.4451 -0.1469 6 1 4.1590 1.8436 0.6432 7 6 4.1214 0.9387 -1.2898 8 7 5.4074 0.6635 -1.3066 9 14 3.0829 0.6434 -2.8141 10 1 3.0990 1.8589 -3.6671 11 1 3.6379 -0.5037 -3.5766 12 1 1.6864 0.3402 -2.4106 13 7 1.6706 2.0924 1.2646 14 6 1.6371 3.5534 1.1155 15 1 2.4057 3.8680 0.4095 16 6 1.8821 4.2170 2.4761 17 6 2.0239 5.7252 2.2665 18 7 0.9094 6.2378 1.4794 19 6 0.6577 7.5609 1.5277 20 8 1.3503 8.2862 2.2128 21 8 -0.3611 8.0786 0.8166 22 6 -0.5733 9.5115 0.9161 23 6 0.6791 10.2471 0.4352 24 6 -1.7663 9.9120 0.0459 25 6 -0.8567 9.8852 2.3724 26 6 0.1233 5.4796 0.7141 27 8 -0.7489 6.0235 0.0713 28 6 0.2606 3.9880 0.6061 29 1 -0.3634 0.4394 -0.9290 30 1 -0.3634 -1.0243 0.0839 31 1 -0.3633 0.5847 0.8450 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8164 0.3069 -2.1106 35 1 2.2960 1.8190 2.0077 36 1 1.0391 4.0170 3.1376 37 1 2.7974 3.8214 2.9163 38 1 2.9583 5.9304 1.7442 39 1 2.0375 6.2210 3.2372 40 1 0.8810 9.9808 -0.6023 41 1 0.5196 11.3228 0.5094 42 1 1.5287 9.9617 1.0555 43 1 -2.6584 9.3879 0.3888 44 1 -1.9259 10.9876 0.1209 45 1 -1.5649 9.6456 -0.9917 46 1 -0.0070 9.5998 2.9927 47 1 -1.0164 10.9609 2.4470 48 1 -1.7489 9.3611 2.7150 49 1 0.1490 3.6886 -0.4359 50 1 -0.5146 3.5101 1.2052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254238983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:12 Heat of formation + Delta-G solvation = -131.925228 kcal Electronic energy + Delta-G solvation = -29794.179649 eV Core-core repulsion = 25821.034302 eV Total energy + Delta-G solvation = -3973.145347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.02295 -40.94769 -38.85909 -38.48720 -36.85445 -35.43632 -34.72253 -33.86007 -31.48998 -30.82358 -28.59165 -28.40445 -28.33695 -25.72980 -24.79151 -24.16092 -22.77860 -21.54651 -21.24454 -19.94351 -19.07625 -18.98922 -18.13057 -18.00247 -17.03413 -16.90032 -16.43537 -16.18332 -15.84361 -15.63286 -15.41027 -15.20895 -14.90449 -14.76933 -14.58122 -14.54943 -14.07465 -13.87812 -13.40192 -13.32204 -13.20658 -13.09289 -12.98656 -12.93404 -12.89216 -12.60507 -12.59109 -12.54745 -12.48602 -12.22323 -11.99400 -11.70556 -11.50777 -11.44391 -11.37931 -11.32265 -11.12343 -10.91091 -10.75571 -10.57473 -9.09097 -8.31278 -6.29893 0.63982 0.87406 1.33240 1.40157 1.47187 1.82193 2.35259 2.45758 3.04913 3.20209 3.52703 3.68367 3.71259 3.75890 3.80086 3.91436 4.15887 4.28586 4.36984 4.44608 4.53818 4.56570 4.58425 4.63675 4.69320 4.72475 4.77789 4.79628 4.82955 4.83249 4.83903 4.88594 5.02837 5.05243 5.10811 5.20262 5.22950 5.24963 5.33402 5.43484 5.46780 5.57024 5.59489 5.61375 5.79315 6.13571 6.41494 6.60114 6.70554 6.87637 6.91927 7.37834 8.84602 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.003134 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.242723 B = 8931.296972 C = 8968.813578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.193 3.807 4 H 0.024 0.976 5 C -0.545 4.545 6 H 0.041 0.959 7 C 0.024 3.976 8 N -0.940 5.940 9 Si 0.913 3.087 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.217 1.217 13 N -0.657 5.657 14 C 0.084 3.916 15 H 0.035 0.965 16 C -0.122 4.122 17 C 0.115 3.885 18 N -0.542 5.542 19 C 0.641 3.359 20 O -0.549 6.549 21 O -0.332 6.332 22 C 0.105 3.895 23 C -0.178 4.178 24 C -0.132 4.132 25 C -0.175 4.175 26 C 0.521 3.479 27 O -0.516 6.516 28 C -0.110 4.110 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.262 0.738 35 H 0.343 0.657 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 14.525 7.784 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.083 3.917 4 H 0.042 0.958 5 C -0.584 4.584 6 H 0.059 0.941 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.140 1.140 13 N -0.287 5.287 14 C -0.027 4.027 15 H 0.053 0.947 16 C -0.160 4.160 17 C -0.005 4.005 18 N -0.291 5.291 19 C 0.399 3.601 20 O -0.437 6.437 21 O -0.245 6.245 22 C 0.069 3.931 23 C -0.235 4.235 24 C -0.189 4.189 25 C -0.232 4.232 26 C 0.312 3.688 27 O -0.390 6.390 28 C -0.150 4.150 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.822 14.937 7.409 22.309 hybrid contribution 1.649 -0.114 -1.166 2.023 sum -13.173 14.823 6.243 20.790 Atomic orbital electron populations 1.21677 0.95034 1.01009 1.01651 1.21775 0.95915 0.97487 0.99950 1.19388 0.91005 0.92175 0.89115 0.95811 1.22040 0.92957 1.40230 1.03141 0.94123 1.25710 0.95545 0.94397 1.01847 1.70123 1.13491 1.45009 1.29318 0.86436 0.82568 0.77363 0.79876 1.21225 1.21863 1.13972 1.60740 1.56070 1.04445 1.07446 1.21468 0.94389 0.89917 0.96901 0.94714 1.22073 1.05736 0.91225 0.96917 1.21794 0.86263 0.95721 0.96718 1.45952 1.32644 1.05131 1.45376 1.18745 0.79799 0.83249 0.78320 1.90885 1.50940 1.58432 1.43489 1.86876 1.46557 1.27779 1.63265 1.22663 0.97598 0.74816 0.98067 1.22463 0.97498 1.02264 1.01305 1.21833 0.95057 1.03139 0.98899 1.22445 1.02559 1.03942 0.94282 1.21202 0.79503 0.91434 0.76663 1.90799 1.32972 1.73385 1.41862 1.21711 1.01036 0.86974 1.05258 0.94310 0.93093 0.90795 0.94607 0.93076 0.92882 0.83822 0.88096 0.87523 0.90246 0.87127 0.92772 0.88320 0.91693 0.91704 0.87311 0.92221 0.91572 0.88446 0.92134 0.88607 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.86 71.98 0.71 -3.44 16 2 C -0.11 -4.29 4.83 30.59 0.15 -4.14 16 3 C 0.19 7.79 1.35 44.17 0.06 7.85 16 4 H 0.02 1.00 6.18 -2.39 -0.01 0.99 16 5 C -0.54 -27.82 8.64 25.60 0.22 -27.60 16 6 H 0.04 2.28 8.00 -2.91 -0.02 2.25 16 7 C 0.02 1.31 5.33 84.65 0.45 1.76 16 8 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 9 Si 0.91 41.82 25.76 68.60 1.77 43.59 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.22 -8.89 5.39 99.48 0.54 -8.35 16 13 N -0.66 -20.86 5.47 -472.59 -2.59 -23.45 16 14 C 0.08 2.40 2.36 45.06 0.11 2.50 16 15 H 0.03 1.23 7.55 -2.39 -0.02 1.21 16 16 C -0.12 -2.54 5.37 30.69 0.16 -2.38 16 17 C 0.12 2.57 5.91 86.50 0.51 3.08 16 18 N -0.54 -14.98 2.92 -889.50 -2.60 -17.57 16 19 C 0.64 19.20 7.54 129.79 0.98 20.18 16 20 O -0.55 -16.57 11.43 19.98 0.23 -16.34 16 21 O -0.33 -9.97 7.09 -47.20 -0.33 -10.30 16 22 C 0.10 2.34 1.13 -10.79 -0.01 2.33 16 23 C -0.18 -3.74 8.37 71.98 0.60 -3.14 16 24 C -0.13 -2.29 8.85 71.98 0.64 -1.65 16 25 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 26 C 0.52 15.51 7.41 87.71 0.65 16.16 16 27 O -0.52 -18.26 14.78 20.67 0.31 -17.95 16 28 C -0.11 -2.96 5.49 29.71 0.16 -2.79 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 2.07 7.66 -2.39 -0.02 2.05 16 32 H 0.04 1.48 4.67 -2.39 -0.01 1.46 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.34 10.85 8.00 -89.69 -0.72 10.13 16 36 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 37 H 0.11 2.07 7.99 -2.39 -0.02 2.05 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.11 2.16 7.61 -2.38 -0.02 2.14 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.55 5.88 -2.38 -0.01 1.53 16 47 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.10 2.82 7.70 -2.39 -0.02 2.80 16 50 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -66.91 383.08 3.12 -63.79 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.04 Total: 28.22 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.99 Total: 5.94 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.88 Total: -96.95 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: 0.20 Total: -44.59 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.77 Total: 43.59 kcal Total: -66.91 3.12 -63.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254238983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.133 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds