Wall clock time and date at job start Tue Mar 31 2020 15:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 H 1.09000 * 109.47196 * 56.67446 * 3 2 1 5 5 C 1.50697 * 109.47243 * 176.67047 * 3 2 1 6 6 H 1.07997 * 120.00171 * 119.99863 * 5 3 2 7 7 C 1.37877 * 120.00294 * 300.00792 * 5 3 2 8 8 N 1.31516 * 119.99738 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00400 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47054 * 59.99384 * 9 7 5 11 11 H 1.48499 * 109.47478 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47087 * 299.99663 * 9 7 5 13 13 N 1.46897 * 109.47380 * 296.67707 * 3 2 1 14 14 C 1.47011 * 111.00190 * 171.67916 * 13 3 2 15 15 C 1.53094 * 109.24761 * 182.26966 * 14 13 3 16 16 O 1.43024 * 109.25129 * 303.17653 * 15 14 13 17 17 C 1.43155 * 113.62914 * 58.99894 * 16 15 14 18 18 C 1.46994 * 110.99669 * 295.35118 * 13 3 2 19 19 C 1.54030 * 108.57433 * 59.12958 * 17 16 15 20 20 O 1.37221 * 111.55962 * 46.20434 * 19 17 16 21 21 C 1.42967 * 118.01539 * 62.99020 * 20 19 17 22 22 C 1.51061 * 108.92711 * 277.50781 * 21 20 19 23 23 N 1.47707 * 110.44769 * 89.23041 * 22 21 20 24 24 C 1.34775 * 120.49090 * 141.27848 * 23 22 21 25 25 C 1.50706 * 119.99810 * 359.97438 * 24 23 22 26 26 O 1.21275 * 120.00286 * 179.97438 * 24 23 22 27 27 C 1.48256 * 119.02658 * 321.27445 * 23 22 21 28 28 H 1.09002 * 109.47225 * 65.07182 * 1 2 3 29 29 H 1.08994 * 109.47172 * 185.06925 * 1 2 3 30 30 H 1.09001 * 109.46864 * 305.06833 * 1 2 3 31 31 H 1.09004 * 109.46526 * 240.00735 * 2 1 3 32 32 H 1.08997 * 109.47109 * 120.00255 * 2 1 3 33 33 H 0.97005 * 120.00011 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.50662 * 62.33542 * 14 13 3 35 35 H 1.09003 * 109.50637 * 302.20539 * 14 13 3 36 36 H 1.09006 * 109.50805 * 183.24875 * 15 14 13 37 37 H 1.08996 * 109.54918 * 63.13170 * 15 14 13 38 38 H 1.08994 * 109.51001 * 57.55398 * 18 13 3 39 39 H 1.09003 * 109.50842 * 297.41543 * 18 13 3 40 40 H 1.08995 * 109.06635 * 285.66549 * 19 17 16 41 41 H 1.09003 * 109.06062 * 166.73165 * 19 17 16 42 42 H 1.09003 * 109.55929 * 37.33735 * 21 20 19 43 43 H 1.08998 * 109.56424 * 157.67178 * 21 20 19 44 44 H 1.08999 * 109.30336 * 209.52755 * 22 21 20 45 45 H 1.08993 * 109.30629 * 328.92467 * 22 21 20 46 46 H 1.08998 * 109.46738 * 59.99622 * 25 24 23 47 47 H 1.08995 * 109.46883 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.46942 * 300.00171 * 25 24 23 49 49 H 1.08994 * 109.01433 * 199.98047 * 27 23 22 50 50 H 1.09007 * 109.00751 * 81.18171 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6289 1.9732 0.8587 5 6 3.5448 1.4433 0.0825 6 1 4.1285 1.8955 -0.7056 7 6 4.1762 0.8667 1.1640 8 7 3.4653 0.3163 2.1239 9 14 6.0414 0.8671 1.2660 10 1 6.5369 2.2669 1.2657 11 1 6.4690 0.1914 2.5174 12 1 6.6013 0.1436 0.0962 13 7 1.6171 2.1115 -1.2375 14 6 1.9164 3.5499 -1.1877 15 6 1.4093 4.2156 -2.4697 16 8 2.0068 3.5764 -3.6011 17 6 1.7267 2.1749 -3.6824 18 6 2.2426 1.4890 -2.4131 19 6 0.2004 1.9833 -3.7611 20 8 -0.3693 2.8409 -4.6682 21 6 0.0065 2.7125 -6.0416 22 6 1.3080 3.4464 -6.2641 23 7 2.4550 2.5477 -6.0221 24 6 3.5491 2.6089 -6.8067 25 6 3.6083 3.5990 -7.9413 26 8 4.4860 1.8671 -6.5998 27 6 2.3852 1.5775 -4.9033 28 1 -0.3634 0.4331 -0.9319 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3633 0.5905 0.8411 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9096 -0.0890 2.8851 34 1 2.9935 3.6948 -1.1037 35 1 1.4203 3.9953 -0.3253 36 1 1.6801 5.2715 -2.4631 37 1 0.3253 4.1182 -2.5270 38 1 1.9880 0.4296 -2.4427 39 1 3.3250 1.6023 -2.3523 40 1 -0.2325 2.1662 -2.7777 41 1 -0.0146 0.9568 -4.0582 42 1 0.1352 1.6585 -6.2877 43 1 -0.7689 3.1446 -6.6741 44 1 1.3456 3.8102 -7.2909 45 1 1.3645 4.2947 -5.5821 46 1 3.5104 4.6102 -7.5464 47 1 4.5627 3.5021 -8.4587 48 1 2.7945 3.4011 -8.6390 49 1 3.3955 1.2620 -4.6432 50 1 1.8141 0.7061 -5.2241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:26 Heat of formation + Delta-G solvation = -101.032466 kcal Electronic energy + Delta-G solvation = -31338.253377 eV Core-core repulsion = 27366.447641 eV Total energy + Delta-G solvation = -3971.805736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84525 -39.17260 -37.97922 -35.94917 -35.22891 -32.87812 -32.58623 -31.28188 -30.21448 -29.38878 -27.91015 -26.27650 -26.15443 -24.59364 -23.09413 -22.51498 -21.68719 -19.73405 -19.20733 -18.91606 -17.30390 -17.11630 -16.56203 -16.26946 -16.03658 -15.66451 -15.28708 -14.83900 -14.61744 -14.34910 -14.21793 -13.85408 -13.58188 -13.44157 -13.05462 -12.84373 -12.76582 -12.63300 -12.31719 -12.23373 -11.95953 -11.91332 -11.61153 -11.40296 -11.33019 -11.20927 -10.94679 -10.83989 -10.67964 -10.56460 -10.36931 -10.09169 -9.89115 -9.77773 -9.69746 -9.38994 -9.22118 -8.74650 -8.55776 -8.40403 -7.26189 -6.03901 -4.16770 2.65886 2.88565 3.27534 3.32167 3.36694 3.74890 4.06838 4.37548 4.53263 4.74012 4.78374 4.79985 5.06576 5.07122 5.08517 5.16245 5.17890 5.25916 5.28462 5.46047 5.57243 5.62208 5.70197 5.75706 5.84437 5.88058 5.94692 5.99807 6.08699 6.27856 6.30612 6.33541 6.39044 6.49149 6.60894 6.61378 6.72036 7.00099 7.09287 7.23080 7.37890 7.40583 7.51855 7.67734 7.69638 7.84025 8.07100 8.17617 8.19575 8.36646 8.91400 9.51369 10.95872 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.004605 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.112124 B = 6078.243313 C = 7171.037534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.041 0.959 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.024 3.976 15 C 0.063 3.937 16 O -0.364 6.364 17 C 0.072 3.928 18 C 0.043 3.957 19 C 0.052 3.948 20 O -0.371 6.371 21 C 0.052 3.948 22 C 0.077 3.923 23 N -0.602 5.602 24 C 0.512 3.488 25 C -0.170 4.170 26 O -0.550 6.550 27 C 0.125 3.875 28 H 0.043 0.957 29 H 0.026 0.974 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.093 0.907 33 H 0.262 0.738 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 6.286 -16.388 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.059 0.941 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.253 5.253 14 C -0.105 4.105 15 C -0.014 4.014 16 O -0.283 6.283 17 C 0.031 3.969 18 C -0.086 4.086 19 C -0.026 4.026 20 O -0.289 6.289 21 C -0.025 4.025 22 C -0.045 4.045 23 N -0.336 5.336 24 C 0.300 3.700 25 C -0.230 4.230 26 O -0.428 6.428 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.114 0.886 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.581 5.971 -16.208 19.287 hybrid contribution 2.088 -0.275 0.477 2.159 sum -6.494 5.696 -15.731 17.947 Atomic orbital electron populations 1.21701 0.98774 0.98484 1.00420 1.21611 0.92192 0.99092 1.02091 1.19299 0.92988 0.91043 0.85733 0.94149 1.21659 0.92606 1.37978 1.06226 0.92611 1.24871 0.97908 0.94879 0.95496 1.69856 1.35074 1.37686 1.09667 0.86750 0.86172 0.78280 0.77399 1.20380 1.21202 1.20252 1.62703 1.56900 1.01483 1.04174 1.22557 1.00184 0.90656 0.97064 1.22692 0.97595 0.95789 0.85355 1.88000 1.74577 1.19670 1.46011 1.22508 0.95523 0.83671 0.95200 1.22452 0.98611 0.98713 0.88864 1.22554 0.92757 0.92870 0.94375 1.86499 1.66831 1.59624 1.15955 1.22578 0.95830 1.00182 0.83875 1.22294 0.85607 0.94443 1.02172 1.48493 1.16861 1.37866 1.30428 1.20707 0.81421 0.84358 0.83475 1.21917 1.04721 0.99246 0.97074 1.90723 1.36262 1.43903 1.71932 1.21412 1.03343 0.90499 0.84538 0.93756 0.95524 0.94079 0.94924 0.88851 0.92790 0.93605 0.90852 0.89775 0.92360 0.90185 0.92703 0.85995 0.94193 0.92603 0.87927 0.90012 0.88770 0.89416 0.89250 0.89666 0.88632 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.72 37.16 0.36 -2.23 16 2 C -0.11 -2.50 5.09 -26.73 -0.14 -2.64 16 3 C 0.22 5.02 1.73 -68.87 -0.12 4.90 16 4 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 5 C -0.55 -14.22 7.14 -34.44 -0.25 -14.47 16 6 H 0.06 1.50 5.80 -52.49 -0.30 1.20 16 7 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 8 N -0.88 -24.35 11.30 55.43 0.63 -23.72 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.53 -10.25 3.17 -227.66 -0.72 -10.97 16 14 C 0.02 0.45 5.41 -3.71 -0.02 0.43 16 15 C 0.06 0.95 6.56 37.21 0.24 1.20 16 16 O -0.36 -5.89 7.41 -52.01 -0.39 -6.27 16 17 C 0.07 1.11 0.72 -90.96 -0.07 1.05 16 18 C 0.04 0.80 3.57 -3.65 -0.01 0.79 16 19 C 0.05 0.72 4.45 37.70 0.17 0.89 16 20 O -0.37 -4.70 9.47 -40.55 -0.38 -5.08 16 21 C 0.05 0.50 6.40 36.18 0.23 0.73 16 22 C 0.08 0.76 5.34 -4.36 -0.02 0.74 16 23 N -0.60 -7.86 2.83 -173.59 -0.49 -8.35 16 24 C 0.51 7.13 7.81 -10.98 -0.09 7.04 16 25 C -0.17 -1.49 8.77 36.01 0.32 -1.17 16 26 O -0.55 -10.24 16.59 5.56 0.09 -10.14 16 27 C 0.12 1.85 4.92 -4.07 -0.02 1.83 16 28 H 0.04 0.78 7.85 -51.93 -0.41 0.37 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.72 6.31 -51.93 -0.33 0.39 16 32 H 0.09 2.38 5.99 -51.93 -0.31 2.07 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 34 H 0.05 0.96 7.08 -51.93 -0.37 0.60 16 35 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.86 6.50 -51.93 -0.34 0.52 16 38 H 0.08 1.50 6.25 -51.93 -0.32 1.17 16 39 H 0.05 1.20 6.25 -51.93 -0.32 0.88 16 40 H 0.12 1.87 6.30 -51.93 -0.33 1.54 16 41 H 0.04 0.52 7.72 -51.93 -0.40 0.12 16 42 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.55 6.23 -51.93 -0.32 0.22 16 45 H 0.09 1.10 6.50 -51.93 -0.34 0.76 16 46 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 48 H 0.08 0.52 7.48 -51.93 -0.39 0.13 16 49 H 0.10 1.68 6.86 -51.93 -0.36 1.32 16 50 H 0.07 0.95 7.13 -51.93 -0.37 0.58 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -30.34 365.28 -8.37 -38.71 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.09 Total: 3.16 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 0.50 Total: 0.91 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.59 Total: -43.04 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.68 Total: -21.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.34 -8.37 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.322 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds