Wall clock time and date at job start Tue Mar 31 2020 15:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 H 1.09000 * 109.47196 * 56.67446 * 3 2 1 5 5 C 1.50697 * 109.47243 * 176.67047 * 3 2 1 6 6 H 1.07997 * 120.00171 * 119.99863 * 5 3 2 7 7 C 1.37877 * 120.00294 * 300.00792 * 5 3 2 8 8 N 1.31516 * 119.99738 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00400 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47054 * 59.99384 * 9 7 5 11 11 H 1.48499 * 109.47478 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47087 * 299.99663 * 9 7 5 13 13 N 1.46897 * 109.47380 * 296.67707 * 3 2 1 14 14 C 1.47011 * 111.00190 * 171.67916 * 13 3 2 15 15 C 1.53094 * 109.24761 * 182.26966 * 14 13 3 16 16 O 1.43024 * 109.25129 * 303.17653 * 15 14 13 17 17 C 1.43155 * 113.62914 * 58.99894 * 16 15 14 18 18 C 1.46994 * 110.99669 * 295.35118 * 13 3 2 19 19 C 1.54030 * 108.57433 * 59.12958 * 17 16 15 20 20 O 1.37221 * 111.55962 * 46.20434 * 19 17 16 21 21 C 1.42967 * 118.01539 * 62.99020 * 20 19 17 22 22 C 1.51061 * 108.92711 * 277.50781 * 21 20 19 23 23 N 1.47707 * 110.44769 * 89.23041 * 22 21 20 24 24 C 1.34775 * 120.49090 * 141.27848 * 23 22 21 25 25 C 1.50706 * 119.99810 * 359.97438 * 24 23 22 26 26 O 1.21275 * 120.00286 * 179.97438 * 24 23 22 27 27 C 1.48256 * 119.02658 * 321.27445 * 23 22 21 28 28 H 1.09002 * 109.47225 * 65.07182 * 1 2 3 29 29 H 1.08994 * 109.47172 * 185.06925 * 1 2 3 30 30 H 1.09001 * 109.46864 * 305.06833 * 1 2 3 31 31 H 1.09004 * 109.46526 * 240.00735 * 2 1 3 32 32 H 1.08997 * 109.47109 * 120.00255 * 2 1 3 33 33 H 0.97005 * 120.00011 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.50662 * 62.33542 * 14 13 3 35 35 H 1.09003 * 109.50637 * 302.20539 * 14 13 3 36 36 H 1.09006 * 109.50805 * 183.24875 * 15 14 13 37 37 H 1.08996 * 109.54918 * 63.13170 * 15 14 13 38 38 H 1.08994 * 109.51001 * 57.55398 * 18 13 3 39 39 H 1.09003 * 109.50842 * 297.41543 * 18 13 3 40 40 H 1.08995 * 109.06635 * 285.66549 * 19 17 16 41 41 H 1.09003 * 109.06062 * 166.73165 * 19 17 16 42 42 H 1.09003 * 109.55929 * 37.33735 * 21 20 19 43 43 H 1.08998 * 109.56424 * 157.67178 * 21 20 19 44 44 H 1.08999 * 109.30336 * 209.52755 * 22 21 20 45 45 H 1.08993 * 109.30629 * 328.92467 * 22 21 20 46 46 H 1.08998 * 109.46738 * 59.99622 * 25 24 23 47 47 H 1.08995 * 109.46883 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.46942 * 300.00171 * 25 24 23 49 49 H 1.08994 * 109.01433 * 199.98047 * 27 23 22 50 50 H 1.09007 * 109.00751 * 81.18171 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6289 1.9732 0.8587 5 6 3.5448 1.4433 0.0825 6 1 4.1285 1.8955 -0.7056 7 6 4.1762 0.8667 1.1640 8 7 3.4653 0.3163 2.1239 9 14 6.0414 0.8671 1.2660 10 1 6.5369 2.2669 1.2657 11 1 6.4690 0.1914 2.5174 12 1 6.6013 0.1436 0.0962 13 7 1.6171 2.1115 -1.2375 14 6 1.9164 3.5499 -1.1877 15 6 1.4093 4.2156 -2.4697 16 8 2.0068 3.5764 -3.6011 17 6 1.7267 2.1749 -3.6824 18 6 2.2426 1.4890 -2.4131 19 6 0.2004 1.9833 -3.7611 20 8 -0.3693 2.8409 -4.6682 21 6 0.0065 2.7125 -6.0416 22 6 1.3080 3.4464 -6.2641 23 7 2.4550 2.5477 -6.0221 24 6 3.5491 2.6089 -6.8067 25 6 3.6083 3.5990 -7.9413 26 8 4.4860 1.8671 -6.5998 27 6 2.3852 1.5775 -4.9033 28 1 -0.3634 0.4331 -0.9319 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3633 0.5905 0.8411 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9096 -0.0890 2.8851 34 1 2.9935 3.6948 -1.1037 35 1 1.4203 3.9953 -0.3253 36 1 1.6801 5.2715 -2.4631 37 1 0.3253 4.1182 -2.5270 38 1 1.9880 0.4296 -2.4427 39 1 3.3250 1.6023 -2.3523 40 1 -0.2325 2.1662 -2.7777 41 1 -0.0146 0.9568 -4.0582 42 1 0.1352 1.6585 -6.2877 43 1 -0.7689 3.1446 -6.6741 44 1 1.3456 3.8102 -7.2909 45 1 1.3645 4.2947 -5.5821 46 1 3.5104 4.6102 -7.5464 47 1 4.5627 3.5021 -8.4587 48 1 2.7945 3.4011 -8.6390 49 1 3.3955 1.2620 -4.6432 50 1 1.8141 0.7061 -5.2241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:25 Heat of formation + Delta-G solvation = -121.249358 kcal Electronic energy + Delta-G solvation = -31339.130047 eV Core-core repulsion = 27366.447641 eV Total energy + Delta-G solvation = -3972.682406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01958 -40.38130 -39.19693 -37.49740 -36.32718 -34.56155 -33.99666 -33.06031 -31.06048 -30.45657 -29.42870 -27.85310 -27.25584 -26.19081 -24.76897 -23.43031 -23.10719 -21.29881 -20.60981 -20.15148 -18.59797 -18.34979 -17.96036 -17.50023 -17.36251 -16.83996 -16.56223 -16.37928 -15.98055 -15.75228 -15.44380 -15.23922 -15.10484 -14.83760 -14.52918 -14.15426 -13.90886 -13.74799 -13.46191 -13.37469 -13.29316 -13.09833 -13.05137 -12.90141 -12.82432 -12.65071 -12.53445 -12.45819 -12.24479 -12.07991 -11.76711 -11.65664 -11.52445 -11.28576 -11.12014 -10.91901 -10.82408 -10.48262 -10.00321 -9.64281 -9.03809 -8.10190 -6.30560 1.30101 1.32379 1.39030 1.61878 1.88969 2.33964 2.70069 2.97235 3.09224 3.22082 3.63469 3.68570 3.79806 3.92135 4.05244 4.20520 4.30668 4.36092 4.37590 4.43959 4.50412 4.52450 4.55628 4.60607 4.65190 4.66792 4.70534 4.74466 4.82912 4.89990 4.96996 4.98323 5.08777 5.13211 5.18347 5.19875 5.23765 5.34649 5.43391 5.45373 5.58609 5.75733 5.98158 6.11392 6.17363 6.29570 6.42320 6.51566 6.64441 6.87680 7.15955 7.39545 8.85140 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.004605 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.112124 B = 6078.243313 C = 7171.037534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.012 0.988 5 C -0.553 4.553 6 H 0.038 0.962 7 C 0.030 3.970 8 N -0.904 5.904 9 Si 0.936 3.064 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.281 1.281 13 N -0.512 5.512 14 C 0.023 3.977 15 C 0.074 3.926 16 O -0.371 6.371 17 C 0.082 3.918 18 C 0.050 3.950 19 C 0.067 3.933 20 O -0.378 6.378 21 C 0.047 3.953 22 C 0.074 3.926 23 N -0.601 5.601 24 C 0.499 3.501 25 C -0.159 4.159 26 O -0.611 6.611 27 C 0.125 3.875 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.263 0.737 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.012 0.988 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.122 0.878 49 H 0.056 0.944 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.742 7.555 -19.050 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.030 0.970 5 C -0.592 4.592 6 H 0.056 0.944 7 C -0.171 4.171 8 N -0.543 5.543 9 Si 0.762 3.238 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.207 1.207 13 N -0.236 5.236 14 C -0.106 4.106 15 C -0.003 4.003 16 O -0.290 6.290 17 C 0.040 3.960 18 C -0.080 4.080 19 C -0.011 4.011 20 O -0.296 6.296 21 C -0.028 4.028 22 C -0.046 4.046 23 N -0.334 5.334 24 C 0.290 3.710 25 C -0.218 4.218 26 O -0.493 6.493 27 C 0.001 3.999 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.159 0.841 44 H 0.143 0.857 45 H 0.099 0.901 46 H 0.125 0.875 47 H 0.105 0.895 48 H 0.140 0.860 49 H 0.075 0.925 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.792 7.272 -18.885 22.935 hybrid contribution 2.776 -0.629 1.270 3.117 sum -8.016 6.643 -17.615 20.462 Atomic orbital electron populations 1.21556 0.95680 0.99794 1.01054 1.21432 0.94881 0.97765 1.00307 1.19078 0.91214 0.91758 0.86528 0.97038 1.21866 0.94291 1.37407 1.05603 0.94354 1.25450 1.01155 0.94962 0.95495 1.69957 1.36123 1.38248 1.09957 0.85970 0.82382 0.78039 0.77358 1.20439 1.20207 1.20708 1.62666 1.56022 1.01964 1.02955 1.22642 0.98205 0.90222 0.99500 1.22692 0.98142 0.96391 0.83061 1.88002 1.75051 1.19904 1.46019 1.22426 0.97170 0.82935 0.93425 1.22379 0.96056 0.99149 0.90382 1.22266 0.90425 0.93842 0.94603 1.86490 1.66478 1.59319 1.17318 1.22901 0.96685 1.00783 0.82473 1.22537 0.84433 0.93240 1.04419 1.48669 1.17882 1.37636 1.29195 1.21766 0.80491 0.84393 0.84317 1.21940 1.06179 0.98251 0.95452 1.90698 1.38420 1.46521 1.73696 1.21256 1.01300 0.91884 0.85430 0.92102 0.93650 0.94576 0.95249 0.91998 0.92784 0.97083 0.90526 0.87459 0.90860 0.90463 0.97000 0.87350 0.92986 0.92335 0.84093 0.85719 0.90058 0.87511 0.89467 0.86012 0.92493 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 9.72 71.98 0.70 -3.89 16 2 C -0.11 -4.84 5.09 30.60 0.16 -4.69 16 3 C 0.22 10.74 1.73 44.17 0.08 10.81 16 4 H 0.01 0.63 8.07 -2.39 -0.02 0.61 16 5 C -0.55 -30.26 7.14 25.60 0.18 -30.08 16 6 H 0.04 2.20 5.80 -2.91 -0.02 2.18 16 7 C 0.03 1.67 5.30 84.65 0.45 2.11 16 8 N -0.90 -51.29 11.30 21.45 0.24 -51.05 16 9 Si 0.94 45.06 29.54 68.60 2.03 47.09 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 13 N -0.51 -20.43 3.17 -874.17 -2.77 -23.20 16 14 C 0.02 0.87 5.41 86.31 0.47 1.34 16 15 C 0.07 2.16 6.56 72.01 0.47 2.63 16 16 O -0.37 -11.69 7.41 -132.94 -0.99 -12.68 16 17 C 0.08 2.49 0.72 -11.01 -0.01 2.48 16 18 C 0.05 1.93 3.57 86.36 0.31 2.24 16 19 C 0.07 1.71 4.45 72.33 0.32 2.03 16 20 O -0.38 -8.20 9.47 -91.95 -0.87 -9.07 16 21 C 0.05 0.69 6.40 71.35 0.46 1.15 16 22 C 0.07 1.18 5.34 85.52 0.46 1.64 16 23 N -0.60 -14.66 2.83 -821.52 -2.33 -16.99 16 24 C 0.50 13.36 7.81 87.66 0.68 14.05 16 25 C -0.16 -2.26 8.77 71.24 0.62 -1.63 16 26 O -0.61 -23.41 16.59 -3.01 -0.05 -23.46 16 27 C 0.12 3.72 4.92 85.40 0.42 4.14 16 28 H 0.06 2.05 7.85 -2.39 -0.02 2.03 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.33 6.31 -2.39 -0.02 1.32 16 32 H 0.06 3.26 5.99 -2.39 -0.01 3.25 16 33 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 34 H 0.01 0.48 7.08 -2.39 -0.02 0.47 16 35 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 36 H 0.11 2.67 8.14 -2.38 -0.02 2.66 16 37 H 0.07 1.99 6.50 -2.39 -0.02 1.97 16 38 H 0.08 2.99 6.25 -2.39 -0.01 2.98 16 39 H 0.01 0.56 6.25 -2.39 -0.01 0.54 16 40 H 0.11 3.09 6.30 -2.39 -0.02 3.08 16 41 H 0.05 1.22 7.72 -2.39 -0.02 1.20 16 42 H 0.06 0.87 7.18 -2.39 -0.02 0.85 16 43 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.12 0.94 6.23 -2.39 -0.01 0.92 16 45 H 0.08 1.59 6.50 -2.39 -0.02 1.57 16 46 H 0.11 1.15 8.12 -2.39 -0.02 1.13 16 47 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 48 H 0.12 0.85 7.48 -2.38 -0.02 0.83 16 49 H 0.06 2.14 6.86 -2.39 -0.02 2.12 16 50 H 0.09 2.30 7.13 -2.38 -0.02 2.28 16 Total: -1.00 -71.30 365.28 1.97 -69.32 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.94 Total: 15.71 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.77 Total: 4.32 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -4.85 Total: -91.23 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.91 Total: -45.21 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.30 1.97 -69.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.926 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds