Wall clock time and date at job start Tue Mar 31 2020 15:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47313 * 2 1 4 4 H 1.09002 * 109.47284 * 182.73676 * 3 2 1 5 5 C 1.50694 * 109.47396 * 62.73241 * 3 2 1 6 6 H 1.07998 * 120.00023 * 275.00621 * 5 3 2 7 7 C 1.37880 * 119.99755 * 95.00078 * 5 3 2 8 8 N 1.31522 * 119.99921 * 183.71300 * 7 5 3 9 9 Si 1.86793 * 120.00136 * 3.71809 * 7 5 3 10 10 H 1.48510 * 109.47021 * 87.16752 * 9 7 5 11 11 H 1.48499 * 109.47109 * 207.16411 * 9 7 5 12 12 H 1.48498 * 109.47328 * 327.16828 * 9 7 5 13 13 N 1.46905 * 109.46909 * 302.73344 * 3 2 1 14 14 C 1.47009 * 111.00135 * 297.03037 * 13 3 2 15 15 C 1.53102 * 109.20013 * 177.73612 * 14 13 3 16 16 O 1.42959 * 109.31137 * 56.66345 * 15 14 13 17 17 C 1.43341 * 113.69270 * 300.91549 * 16 15 14 18 18 C 1.46958 * 110.99571 * 173.37234 * 13 3 2 19 19 C 1.47915 * 111.73225 * 295.79475 * 17 16 15 20 20 O 1.42380 * 113.89429 * 301.45962 * 19 17 16 21 21 C 1.40637 * 113.46976 * 271.72711 * 20 19 17 22 22 C 1.54249 * 109.63523 * 95.49703 * 21 20 19 23 23 N 1.48250 * 110.66875 * 320.75793 * 22 21 20 24 24 C 1.34773 * 118.47094 * 138.65761 * 23 22 21 25 25 C 1.50699 * 120.00145 * 0.02562 * 24 23 22 26 26 O 1.21284 * 119.99971 * 180.02562 * 24 23 22 27 27 C 1.44375 * 123.06160 * 318.64313 * 23 22 21 28 28 H 1.09001 * 109.47356 * 183.98331 * 1 2 3 29 29 H 1.09006 * 109.46666 * 303.98081 * 1 2 3 30 30 H 1.08997 * 109.47049 * 63.97983 * 1 2 3 31 31 H 1.09003 * 109.47021 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.47030 * 120.00383 * 2 1 3 33 33 H 0.96992 * 120.00053 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.51603 * 297.65215 * 14 13 3 35 35 H 1.09000 * 109.52079 * 57.76030 * 14 13 3 36 36 H 1.09001 * 109.49798 * 176.61513 * 15 14 13 37 37 H 1.08998 * 109.49603 * 296.68068 * 15 14 13 38 38 H 1.08996 * 109.51672 * 62.95757 * 18 13 3 39 39 H 1.08999 * 109.56040 * 302.81760 * 18 13 3 40 40 H 1.08993 * 108.59790 * 62.60298 * 19 17 16 41 41 H 1.09003 * 108.59819 * 180.31971 * 19 17 16 42 42 H 1.08998 * 109.42201 * 335.45630 * 21 20 19 43 43 H 1.09000 * 109.45929 * 215.56122 * 21 20 19 44 44 H 1.08997 * 109.24051 * 200.45225 * 22 21 20 45 45 H 1.09006 * 109.23926 * 81.06599 * 22 21 20 46 46 H 1.08996 * 109.47498 * 59.99146 * 25 24 23 47 47 H 1.08997 * 109.47486 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.46622 * 299.99614 * 25 24 23 49 49 H 1.09002 * 109.45028 * 209.05768 * 27 23 22 50 50 H 1.08997 * 109.44849 * 328.98249 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1290 1.4428 -0.0491 5 6 1.5939 2.1331 1.2629 6 1 0.6157 2.5883 1.3127 7 6 2.4343 2.1838 2.3547 8 7 2.0183 2.7218 3.4804 9 14 4.1639 1.4883 2.2351 10 1 5.0827 2.5333 1.7162 11 1 4.6172 1.0547 3.5811 12 1 4.1667 0.3244 1.3129 13 7 1.4972 2.1538 -1.1651 14 6 1.9700 1.5491 -2.4189 15 6 1.3365 2.2845 -3.6029 16 8 1.6501 3.6767 -3.5173 17 6 1.1911 4.2973 -2.3095 18 6 1.8369 3.5826 -1.1150 19 6 -0.2850 4.2878 -2.2156 20 8 -0.9359 4.9466 -3.2971 21 6 -1.1229 6.3240 -3.0830 22 6 0.0307 7.1115 -3.7373 23 7 1.3199 6.4038 -3.5500 24 6 2.1823 6.3550 -4.5845 25 6 1.8267 7.0114 -5.8936 26 8 3.2446 5.7828 -4.4619 27 6 1.6946 5.7646 -2.3109 28 1 -0.3634 -1.0252 0.0714 29 1 -0.3633 0.5744 0.8522 30 1 -0.3633 0.4508 -0.9235 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6097 2.7578 4.2484 34 1 3.0553 1.6326 -2.4768 35 1 1.6838 0.4977 -2.4468 36 1 1.7298 1.8796 -4.5353 37 1 0.2548 2.1525 -3.5765 38 1 2.9194 3.7014 -1.1615 39 1 1.4628 4.0144 -0.1867 40 1 -0.6247 3.2527 -2.1841 41 1 -0.5774 4.7749 -1.2853 42 1 -1.1381 6.5255 -2.0119 43 1 -2.0702 6.6347 -3.5236 44 1 0.0943 8.0999 -3.2824 45 1 -0.1678 7.2199 -4.8037 46 1 1.6670 8.0777 -5.7339 47 1 2.6404 6.8687 -6.6045 48 1 0.9154 6.5628 -6.2891 49 1 2.7799 5.7760 -2.2103 50 1 1.2473 6.3026 -1.4752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:30 Heat of formation + Delta-G solvation = -98.997871 kcal Electronic energy + Delta-G solvation = -31457.448181 eV Core-core repulsion = 27485.730671 eV Total energy + Delta-G solvation = -3971.717510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69211 -39.03111 -37.95721 -36.07549 -35.01375 -32.92181 -32.58241 -31.52374 -30.00148 -29.39305 -28.19076 -26.43069 -25.96028 -24.69626 -22.67883 -22.58224 -22.31720 -19.63961 -19.10649 -18.76325 -17.33935 -16.91247 -16.81262 -16.29012 -15.95804 -15.45964 -15.11193 -14.90440 -14.59054 -14.36398 -14.20943 -13.81588 -13.62601 -13.26188 -13.18643 -13.02134 -12.96714 -12.52570 -12.46734 -12.32581 -12.15299 -12.03403 -11.58254 -11.44778 -11.08904 -11.02102 -10.96023 -10.85924 -10.82051 -10.73109 -10.35777 -10.16211 -9.92606 -9.79105 -9.60719 -9.54067 -8.99652 -8.80942 -8.61698 -8.44292 -7.38979 -6.15923 -4.14542 2.83057 3.07527 3.22569 3.31806 3.34634 3.80086 4.25002 4.34540 4.57502 4.62671 4.71797 4.88386 5.01251 5.15219 5.15970 5.20786 5.29772 5.31935 5.39100 5.45538 5.47380 5.51125 5.61582 5.68382 5.75553 5.78322 5.81196 5.98519 6.08002 6.16285 6.19204 6.25476 6.27966 6.40405 6.50631 6.62233 6.67022 6.74052 6.89116 7.01689 7.12728 7.26161 7.35519 7.46206 7.54564 7.71865 7.90556 8.00066 8.41168 8.56980 8.91737 9.48285 10.96376 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.004414 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.983871 B = 6341.769841 C = 6510.715619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.182 3.818 4 H 0.002 0.998 5 C -0.499 4.499 6 H 0.082 0.918 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.868 3.132 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.520 5.520 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.354 6.354 17 C 0.080 3.920 18 C 0.050 3.950 19 C 0.049 3.951 20 O -0.360 6.360 21 C 0.044 3.956 22 C 0.079 3.921 23 N -0.599 5.599 24 C 0.513 3.487 25 C -0.172 4.172 26 O -0.530 6.530 27 C 0.125 3.875 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 8.094 -14.993 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.019 0.981 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.696 3.304 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.245 5.245 14 C -0.117 4.117 15 C -0.012 4.012 16 O -0.272 6.272 17 C 0.038 3.962 18 C -0.079 4.079 19 C -0.028 4.028 20 O -0.277 6.277 21 C -0.035 4.035 22 C -0.044 4.044 23 N -0.333 5.333 24 C 0.301 3.699 25 C -0.231 4.231 26 O -0.406 6.406 27 C 0.001 3.999 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.111 0.889 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.927 7.793 -15.002 17.914 hybrid contribution 1.833 -0.378 0.570 1.956 sum -4.094 7.416 -14.432 16.734 Atomic orbital electron populations 1.21464 0.95837 0.98439 1.02431 1.21645 0.96832 0.97476 0.98533 1.19787 0.92245 0.91314 0.89124 0.98062 1.20794 1.03334 1.35473 0.94126 0.89990 1.24957 0.97810 0.94659 0.95331 1.69875 1.36388 1.44929 1.02112 0.87002 0.85842 0.80271 0.77334 1.20371 1.21397 1.19083 1.62310 1.59277 1.01411 1.01534 1.22812 0.97603 0.99540 0.91751 1.22545 0.99212 0.82106 0.97380 1.88197 1.79009 1.21514 1.38476 1.22134 0.93922 0.93290 0.86828 1.22482 0.97889 0.89994 0.97562 1.21991 0.92369 0.99720 0.88687 1.87494 1.77436 1.19245 1.43512 1.22911 0.97118 0.83216 1.00228 1.22832 0.83766 0.95169 1.02617 1.47480 1.17623 1.55167 1.12988 1.20622 0.83969 0.79811 0.85497 1.21927 1.04252 1.01352 0.95579 1.90718 1.24142 1.42964 1.82761 1.21552 1.02372 0.90252 0.85761 0.95874 0.91572 0.93249 0.95461 0.92941 0.92590 0.95241 0.90245 0.89818 0.92883 0.94646 0.87853 0.87813 0.91923 0.92368 0.88901 0.91197 0.89442 0.90041 0.89526 0.89531 0.88925 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.52 37.16 0.35 -2.03 16 2 C -0.11 -2.21 5.32 -26.73 -0.14 -2.35 16 3 C 0.18 4.10 1.38 -68.87 -0.10 4.00 16 4 H 0.00 0.04 5.30 -51.93 -0.27 -0.23 16 5 C -0.50 -12.83 6.20 -34.44 -0.21 -13.04 16 6 H 0.08 2.30 7.84 -52.49 -0.41 1.88 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -25.89 13.96 55.43 0.77 -25.11 16 9 Si 0.87 21.16 27.03 -169.99 -4.59 16.56 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.32 6.76 56.52 0.38 -5.94 16 13 N -0.52 -10.26 3.30 -227.54 -0.75 -11.01 16 14 C 0.01 0.21 5.40 -3.71 -0.02 0.19 16 15 C 0.06 1.06 6.66 37.21 0.25 1.31 16 16 O -0.35 -6.39 8.47 -53.12 -0.45 -6.84 16 17 C 0.08 1.32 0.66 -91.73 -0.06 1.26 16 18 C 0.05 0.96 3.97 -3.56 -0.01 0.95 16 19 C 0.05 0.73 4.57 34.69 0.16 0.89 16 20 O -0.36 -4.93 10.19 -37.57 -0.38 -5.31 16 21 C 0.04 0.42 6.51 37.81 0.25 0.67 16 22 C 0.08 0.71 6.39 -2.42 -0.02 0.70 16 23 N -0.60 -7.86 2.43 -171.80 -0.42 -8.27 16 24 C 0.51 7.46 7.00 -10.99 -0.08 7.38 16 25 C -0.17 -1.64 8.65 36.01 0.31 -1.32 16 26 O -0.53 -10.21 15.71 -5.62 -0.09 -10.30 16 27 C 0.12 1.88 4.47 -4.05 -0.02 1.86 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 1.41 7.09 -51.93 -0.37 1.04 16 30 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 31 H 0.03 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.33 6.33 -51.93 -0.33 1.00 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.84 6.77 -51.93 -0.35 0.49 16 38 H 0.04 0.75 8.04 -51.93 -0.42 0.34 16 39 H 0.10 2.15 6.74 -51.93 -0.35 1.80 16 40 H 0.10 1.71 6.44 -51.93 -0.33 1.38 16 41 H 0.06 0.90 7.25 -51.93 -0.38 0.52 16 42 H 0.06 0.54 7.19 -51.93 -0.37 0.16 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.64 5.87 -51.93 -0.31 0.33 16 46 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 47 H 0.09 0.84 8.12 -51.93 -0.42 0.41 16 48 H 0.09 0.72 7.39 -51.93 -0.38 0.34 16 49 H 0.09 1.60 7.10 -51.93 -0.37 1.23 16 50 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -32.10 369.23 -8.11 -40.21 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.33 Total: 2.10 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 0.56 Total: 2.41 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.39 Total: -44.40 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.92 Total: -22.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.59 Total: 16.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.10 -8.11 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.786 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds