Wall clock time and date at job start Tue Mar 31 2020 15:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47313 * 2 1 4 4 H 1.09002 * 109.47284 * 182.73676 * 3 2 1 5 5 C 1.50694 * 109.47396 * 62.73241 * 3 2 1 6 6 H 1.07998 * 120.00023 * 275.00621 * 5 3 2 7 7 C 1.37880 * 119.99755 * 95.00078 * 5 3 2 8 8 N 1.31522 * 119.99921 * 183.71300 * 7 5 3 9 9 Si 1.86793 * 120.00136 * 3.71809 * 7 5 3 10 10 H 1.48510 * 109.47021 * 87.16752 * 9 7 5 11 11 H 1.48499 * 109.47109 * 207.16411 * 9 7 5 12 12 H 1.48498 * 109.47328 * 327.16828 * 9 7 5 13 13 N 1.46905 * 109.46909 * 302.73344 * 3 2 1 14 14 C 1.47009 * 111.00135 * 297.03037 * 13 3 2 15 15 C 1.53102 * 109.20013 * 177.73612 * 14 13 3 16 16 O 1.42959 * 109.31137 * 56.66345 * 15 14 13 17 17 C 1.43341 * 113.69270 * 300.91549 * 16 15 14 18 18 C 1.46958 * 110.99571 * 173.37234 * 13 3 2 19 19 C 1.47915 * 111.73225 * 295.79475 * 17 16 15 20 20 O 1.42380 * 113.89429 * 301.45962 * 19 17 16 21 21 C 1.40637 * 113.46976 * 271.72711 * 20 19 17 22 22 C 1.54249 * 109.63523 * 95.49703 * 21 20 19 23 23 N 1.48250 * 110.66875 * 320.75793 * 22 21 20 24 24 C 1.34773 * 118.47094 * 138.65761 * 23 22 21 25 25 C 1.50699 * 120.00145 * 0.02562 * 24 23 22 26 26 O 1.21284 * 119.99971 * 180.02562 * 24 23 22 27 27 C 1.44375 * 123.06160 * 318.64313 * 23 22 21 28 28 H 1.09001 * 109.47356 * 183.98331 * 1 2 3 29 29 H 1.09006 * 109.46666 * 303.98081 * 1 2 3 30 30 H 1.08997 * 109.47049 * 63.97983 * 1 2 3 31 31 H 1.09003 * 109.47021 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.47030 * 120.00383 * 2 1 3 33 33 H 0.96992 * 120.00053 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.51603 * 297.65215 * 14 13 3 35 35 H 1.09000 * 109.52079 * 57.76030 * 14 13 3 36 36 H 1.09001 * 109.49798 * 176.61513 * 15 14 13 37 37 H 1.08998 * 109.49603 * 296.68068 * 15 14 13 38 38 H 1.08996 * 109.51672 * 62.95757 * 18 13 3 39 39 H 1.08999 * 109.56040 * 302.81760 * 18 13 3 40 40 H 1.08993 * 108.59790 * 62.60298 * 19 17 16 41 41 H 1.09003 * 108.59819 * 180.31971 * 19 17 16 42 42 H 1.08998 * 109.42201 * 335.45630 * 21 20 19 43 43 H 1.09000 * 109.45929 * 215.56122 * 21 20 19 44 44 H 1.08997 * 109.24051 * 200.45225 * 22 21 20 45 45 H 1.09006 * 109.23926 * 81.06599 * 22 21 20 46 46 H 1.08996 * 109.47498 * 59.99146 * 25 24 23 47 47 H 1.08997 * 109.47486 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.46622 * 299.99614 * 25 24 23 49 49 H 1.09002 * 109.45028 * 209.05768 * 27 23 22 50 50 H 1.08997 * 109.44849 * 328.98249 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1290 1.4428 -0.0491 5 6 1.5939 2.1331 1.2629 6 1 0.6157 2.5883 1.3127 7 6 2.4343 2.1838 2.3547 8 7 2.0183 2.7218 3.4804 9 14 4.1639 1.4883 2.2351 10 1 5.0827 2.5333 1.7162 11 1 4.6172 1.0547 3.5811 12 1 4.1667 0.3244 1.3129 13 7 1.4972 2.1538 -1.1651 14 6 1.9700 1.5491 -2.4189 15 6 1.3365 2.2845 -3.6029 16 8 1.6501 3.6767 -3.5173 17 6 1.1911 4.2973 -2.3095 18 6 1.8369 3.5826 -1.1150 19 6 -0.2850 4.2878 -2.2156 20 8 -0.9359 4.9466 -3.2971 21 6 -1.1229 6.3240 -3.0830 22 6 0.0307 7.1115 -3.7373 23 7 1.3199 6.4038 -3.5500 24 6 2.1823 6.3550 -4.5845 25 6 1.8267 7.0114 -5.8936 26 8 3.2446 5.7828 -4.4619 27 6 1.6946 5.7646 -2.3109 28 1 -0.3634 -1.0252 0.0714 29 1 -0.3633 0.5744 0.8522 30 1 -0.3633 0.4508 -0.9235 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6097 2.7578 4.2484 34 1 3.0553 1.6326 -2.4768 35 1 1.6838 0.4977 -2.4468 36 1 1.7298 1.8796 -4.5353 37 1 0.2548 2.1525 -3.5765 38 1 2.9194 3.7014 -1.1615 39 1 1.4628 4.0144 -0.1867 40 1 -0.6247 3.2527 -2.1841 41 1 -0.5774 4.7749 -1.2853 42 1 -1.1381 6.5255 -2.0119 43 1 -2.0702 6.6347 -3.5236 44 1 0.0943 8.0999 -3.2824 45 1 -0.1678 7.2199 -4.8037 46 1 1.6670 8.0777 -5.7339 47 1 2.6404 6.8687 -6.6045 48 1 0.9154 6.5628 -6.2891 49 1 2.7799 5.7760 -2.2103 50 1 1.2473 6.3026 -1.4752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:29 Heat of formation + Delta-G solvation = -121.429227 kcal Electronic energy + Delta-G solvation = -31458.420877 eV Core-core repulsion = 27485.730671 eV Total energy + Delta-G solvation = -3972.690206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90297 -40.31983 -39.12976 -37.64941 -36.12400 -34.52854 -34.19572 -33.20983 -30.91647 -30.55640 -29.60596 -28.01152 -27.12788 -26.30157 -24.32021 -23.75977 -23.49172 -21.16038 -20.47737 -20.02778 -18.87247 -18.45256 -17.97846 -17.63062 -17.04238 -16.87610 -16.40861 -16.12103 -15.91626 -15.85466 -15.65404 -15.17409 -14.93175 -14.83939 -14.70094 -14.40424 -14.18001 -13.97761 -13.80714 -13.38702 -13.27617 -13.15110 -13.00236 -12.76132 -12.69224 -12.65860 -12.58940 -12.42094 -12.12524 -11.93734 -11.85414 -11.73270 -11.60104 -11.53131 -10.86606 -10.85911 -10.75715 -10.71812 -10.13067 -9.53436 -9.08180 -8.29689 -6.29068 1.24375 1.29847 1.36469 1.77243 2.06862 2.28837 2.69371 2.94403 3.11148 3.18397 3.64528 3.74183 3.87570 3.94297 4.02478 4.14620 4.23197 4.24485 4.32185 4.35300 4.38956 4.47541 4.51524 4.53700 4.60557 4.64144 4.66342 4.72864 4.74814 4.79902 4.79999 4.85378 4.93862 4.99640 5.04087 5.10260 5.18018 5.19643 5.34445 5.37510 5.60900 5.67334 5.75787 6.05357 6.16397 6.25323 6.47036 6.47405 6.61100 6.77437 7.35529 7.35827 8.85950 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.004414 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.983871 B = 6341.769841 C = 6510.715619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C 0.182 3.818 4 H -0.016 1.016 5 C -0.480 4.480 6 H 0.052 0.948 7 C 0.026 3.974 8 N -0.938 5.938 9 Si 0.917 3.083 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.254 1.254 13 N -0.515 5.515 14 C 0.014 3.986 15 C 0.068 3.932 16 O -0.369 6.369 17 C 0.088 3.912 18 C 0.056 3.944 19 C 0.062 3.938 20 O -0.370 6.370 21 C 0.033 3.967 22 C 0.075 3.925 23 N -0.598 5.598 24 C 0.500 3.500 25 C -0.161 4.161 26 O -0.591 6.591 27 C 0.126 3.874 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.012 0.988 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.007 0.993 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.060 0.940 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 8.536 -17.609 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.002 0.998 5 C -0.519 4.519 6 H 0.070 0.930 7 C -0.172 4.172 8 N -0.579 5.579 9 Si 0.743 3.257 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.178 1.178 13 N -0.240 5.240 14 C -0.115 4.115 15 C -0.009 4.009 16 O -0.287 6.287 17 C 0.047 3.953 18 C -0.073 4.073 19 C -0.015 4.015 20 O -0.288 6.288 21 C -0.044 4.044 22 C -0.046 4.046 23 N -0.330 5.330 24 C 0.290 3.710 25 C -0.220 4.220 26 O -0.471 6.471 27 C 0.001 3.999 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.025 0.975 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.145 0.855 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.079 0.921 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.532 8.252 -17.645 20.885 hybrid contribution 2.231 -0.439 1.332 2.635 sum -5.301 7.814 -16.313 18.849 Atomic orbital electron populations 1.21343 0.94508 0.99684 1.01554 1.21600 0.97958 0.95765 0.99162 1.19715 0.91286 0.92682 0.88851 0.99811 1.20870 1.01674 1.34052 0.95278 0.93012 1.25551 1.00928 0.95527 0.95226 1.69985 1.37660 1.47276 1.02930 0.86206 0.82080 0.79925 0.77494 1.20871 1.21065 1.17760 1.62261 1.58727 1.01370 1.01620 1.22897 0.96719 1.00663 0.91178 1.22635 0.99704 0.81235 0.97338 1.88198 1.79427 1.22387 1.38729 1.22074 0.94861 0.93516 0.84876 1.22375 0.96304 0.90283 0.98351 1.21699 0.90934 0.99401 0.89494 1.87470 1.76939 1.21540 1.42808 1.23263 0.98937 0.81134 1.01093 1.23179 0.81182 0.95659 1.04621 1.47649 1.19061 1.54550 1.11770 1.21615 0.83196 0.79105 0.87063 1.21922 1.04810 1.02938 0.92303 1.90690 1.26734 1.45792 1.83914 1.21381 1.00630 0.90072 0.87816 0.93219 0.94512 0.92310 0.92892 0.94200 0.92672 0.96922 0.88473 0.87828 0.91912 0.97510 0.90023 0.89336 0.91646 0.92061 0.85540 0.88308 0.86883 0.86711 0.89927 0.87589 0.92120 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 9.52 71.98 0.69 -3.51 16 2 C -0.11 -4.29 5.32 30.59 0.16 -4.13 16 3 C 0.18 8.29 1.38 44.17 0.06 8.35 16 4 H -0.02 -0.77 5.30 -2.39 -0.01 -0.78 16 5 C -0.48 -25.55 6.20 25.60 0.16 -25.39 16 6 H 0.05 3.04 7.84 -2.91 -0.02 3.01 16 7 C 0.03 1.45 5.47 84.65 0.46 1.92 16 8 N -0.94 -56.18 13.96 21.45 0.30 -55.88 16 9 Si 0.92 44.58 27.03 68.60 1.85 46.43 16 10 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.71 6.76 99.48 0.67 -11.04 16 13 N -0.52 -20.53 3.30 -873.81 -2.88 -23.41 16 14 C 0.01 0.48 5.40 86.32 0.47 0.95 16 15 C 0.07 2.12 6.66 72.02 0.48 2.60 16 16 O -0.37 -13.22 8.47 -131.87 -1.12 -14.33 16 17 C 0.09 2.94 0.66 -11.51 -0.01 2.94 16 18 C 0.06 2.28 3.97 86.44 0.34 2.62 16 19 C 0.06 1.81 4.57 70.39 0.32 2.13 16 20 O -0.37 -9.22 10.19 -142.48 -1.45 -10.67 16 21 C 0.03 0.52 6.51 72.41 0.47 0.99 16 22 C 0.07 1.05 6.39 86.47 0.55 1.60 16 23 N -0.60 -14.71 2.43 -815.86 -1.98 -16.69 16 24 C 0.50 13.94 7.00 87.66 0.61 14.55 16 25 C -0.16 -2.56 8.65 71.24 0.62 -1.94 16 26 O -0.59 -23.25 15.71 7.64 0.12 -23.13 16 27 C 0.13 3.85 4.47 87.50 0.39 4.24 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.55 7.09 -2.38 -0.02 1.54 16 30 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 31 H 0.05 1.87 6.56 -2.39 -0.02 1.85 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 34 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.10 3.04 6.33 -2.39 -0.02 3.02 16 36 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 37 H 0.06 1.86 6.77 -2.39 -0.02 1.85 16 38 H 0.01 0.30 8.04 -2.39 -0.02 0.28 16 39 H 0.08 3.62 6.74 -2.39 -0.02 3.60 16 40 H 0.09 2.85 6.44 -2.39 -0.02 2.84 16 41 H 0.07 1.85 7.25 -2.39 -0.02 1.83 16 42 H 0.06 0.95 7.19 -2.39 -0.02 0.93 16 43 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 1.05 5.87 -2.38 -0.01 1.04 16 46 H 0.11 1.07 8.04 -2.39 -0.02 1.05 16 47 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 48 H 0.11 1.31 7.39 -2.39 -0.02 1.29 16 49 H 0.06 2.23 7.10 -2.39 -0.02 2.22 16 50 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -73.95 369.23 1.51 -72.44 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.89 Total: 17.32 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.78 Total: 7.92 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.56 Total: -95.98 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.45 Total: -48.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.85 Total: 46.43 kcal Total: -73.95 1.51 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.994 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds