Wall clock time and date at job start Tue Mar 31 2020 15:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47432 * 171.61550 * 3 2 1 5 5 C 1.50701 * 109.47165 * 51.61599 * 3 2 1 6 6 H 1.07995 * 119.99900 * 244.52867 * 5 3 2 7 7 C 1.37872 * 119.99971 * 64.52286 * 5 3 2 8 8 N 1.31516 * 120.00143 * 198.50505 * 7 5 3 9 9 Si 1.86800 * 120.00158 * 18.50622 * 7 5 3 10 10 H 1.48497 * 109.47269 * 92.66281 * 9 7 5 11 11 H 1.48501 * 109.47415 * 212.66562 * 9 7 5 12 12 H 1.48498 * 109.47093 * 332.66648 * 9 7 5 13 13 N 1.46906 * 109.47146 * 291.61491 * 3 2 1 14 14 C 1.46828 * 110.99693 * 71.49623 * 13 3 2 15 15 C 1.53584 * 107.90135 * 238.10414 * 14 13 3 16 16 H 1.08997 * 110.29872 * 102.92031 * 15 14 13 17 17 O 1.42898 * 110.29649 * 224.96301 * 15 14 13 18 18 C 1.42905 * 113.99934 * 268.54432 * 17 15 14 19 19 C 1.50697 * 109.47089 * 180.02562 * 18 17 15 20 20 O 1.21290 * 120.00034 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00413 * 179.97438 * 19 18 17 22 22 C 1.46498 * 120.00761 * 180.02562 * 21 19 18 23 23 C 1.46504 * 119.99326 * 359.72607 * 21 19 18 24 24 C 1.53588 * 105.20243 * 343.89492 * 15 14 13 25 25 H 1.09003 * 112.81759 * 147.12239 * 24 15 14 26 26 C 1.54560 * 110.01791 * 274.92024 * 24 15 14 27 27 O 1.44473 * 103.24703 * 148.83910 * 26 24 15 28 28 C 1.43681 * 107.05722 * 319.74272 * 27 26 24 29 29 C 1.47305 * 111.00171 * 308.97494 * 13 3 2 30 30 H 1.09004 * 112.47447 * 12.73656 * 29 13 3 31 31 H 1.09002 * 109.47117 * 73.25759 * 1 2 3 32 32 H 1.09002 * 109.47004 * 193.25284 * 1 2 3 33 33 H 1.08993 * 109.46998 * 313.25365 * 1 2 3 34 34 H 1.09002 * 109.46898 * 240.00273 * 2 1 3 35 35 H 1.09001 * 109.47285 * 120.00277 * 2 1 3 36 36 H 0.96995 * 120.00064 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.78088 * 118.49825 * 14 13 3 38 38 H 1.09002 * 109.78131 * 357.70913 * 14 13 3 39 39 H 1.08995 * 109.46978 * 60.00240 * 18 17 15 40 40 H 1.09003 * 109.46965 * 300.00246 * 18 17 15 41 41 H 1.09003 * 109.47040 * 89.99926 * 22 21 19 42 42 H 1.08993 * 109.47136 * 209.99986 * 22 21 19 43 43 H 1.08998 * 109.46644 * 330.00183 * 22 21 19 44 44 H 1.08998 * 109.47266 * 359.97438 * 23 21 19 45 45 H 1.09001 * 109.47337 * 120.00435 * 23 21 19 46 46 H 1.09005 * 109.46998 * 239.99806 * 23 21 19 47 47 H 1.08999 * 110.65936 * 30.39752 * 26 24 15 48 48 H 1.09000 * 110.66060 * 267.28092 * 26 24 15 49 49 H 1.08997 * 109.84471 * 266.01492 * 28 27 26 50 50 H 1.09007 * 109.92576 * 145.04135 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1196 1.4461 0.1498 5 6 1.3757 2.2102 1.1137 6 1 0.7186 3.0356 0.8834 7 6 1.6068 1.8586 2.4267 8 7 0.7816 2.2583 3.3695 9 14 3.0920 0.8145 2.8665 10 1 4.2309 1.6986 3.2219 11 1 2.7606 -0.0552 4.0238 12 1 3.4652 -0.0301 1.7036 13 7 1.7222 2.0742 -1.2876 14 6 0.2819 2.3344 -1.4048 15 6 -0.2302 1.6015 -2.6535 16 1 -0.7581 0.6916 -2.3680 17 8 -1.0896 2.4550 -3.4117 18 6 -2.4717 2.3438 -3.0658 19 6 -3.2812 3.2825 -3.9229 20 8 -2.7289 3.9779 -4.7491 21 7 -4.6188 3.3485 -3.7722 22 6 -5.4059 4.2606 -4.6059 23 6 -5.2866 2.5033 -2.7793 24 6 1.0287 1.2577 -3.4634 25 1 0.9350 0.3210 -4.0130 26 6 1.4287 2.4561 -4.3537 27 8 2.8672 2.3461 -4.4301 28 6 3.3312 1.9707 -3.1231 29 6 2.1731 1.2365 -2.4123 30 1 2.4471 0.2293 -2.0980 31 1 -0.3633 0.2960 -0.9841 32 1 -0.3633 -1.0003 0.2356 33 1 -0.3633 0.7041 0.7484 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.9439 2.0106 4.2931 37 1 0.1078 3.4054 -1.5084 38 1 -0.2336 1.9604 -0.5202 39 1 -2.6054 2.6035 -2.0157 40 1 -2.8067 1.3200 -3.2324 41 1 -5.7167 3.7453 -5.5147 42 1 -6.2871 4.5879 -4.0542 43 1 -4.7992 5.1271 -4.8689 44 1 -4.5450 1.8930 -2.2639 45 1 -5.8056 3.1328 -2.0564 46 1 -6.0063 1.8549 -3.2791 47 1 1.1392 3.3967 -3.8852 48 1 0.9828 2.3651 -5.3441 49 1 3.6068 2.8613 -2.5584 50 1 4.1917 1.3073 -3.2107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:16 Heat of formation + Delta-G solvation = -69.809964 kcal Electronic energy + Delta-G solvation = -30486.507137 eV Core-core repulsion = 26516.055310 eV Total energy + Delta-G solvation = -3970.451827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69333 -39.88300 -37.43980 -36.96070 -35.66115 -33.41227 -31.75051 -30.59405 -29.45130 -29.12098 -27.80121 -27.47581 -25.78926 -25.27968 -23.66323 -22.29854 -21.13133 -20.20095 -19.74563 -19.04254 -17.38671 -16.97028 -16.55378 -16.38035 -16.21238 -15.81308 -15.28128 -15.08714 -14.77249 -14.36338 -14.09113 -14.06242 -13.78136 -13.33427 -13.17863 -12.99152 -12.88733 -12.78428 -12.68522 -12.54419 -12.21250 -12.03900 -11.96423 -11.71423 -11.52201 -11.27055 -10.98699 -10.72955 -10.57036 -10.45457 -10.25969 -10.16213 -9.97414 -9.82951 -9.48198 -9.33660 -9.28218 -9.16859 -8.95279 -8.39579 -7.37723 -6.21080 -4.11839 2.47554 2.55808 3.22056 3.31052 3.34969 3.69682 4.31580 4.34406 4.44725 4.52706 4.75171 4.80225 4.96861 5.01544 5.02130 5.06109 5.09082 5.12094 5.20964 5.33256 5.36703 5.42217 5.55483 5.57379 5.61079 5.63921 5.77687 5.97989 5.99529 6.11391 6.14715 6.16446 6.20113 6.30438 6.37972 6.42952 6.52961 6.65423 6.86325 6.90732 6.99636 7.03606 7.19935 7.24737 7.30056 7.49176 7.87347 8.01406 8.02597 8.52654 8.89246 9.46044 10.90949 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.004253 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.013581 B = 6581.995727 C = 8187.944021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.039 0.961 5 C -0.513 4.513 6 H 0.082 0.918 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.860 3.140 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.257 1.257 13 N -0.501 5.501 14 C 0.019 3.981 15 C 0.070 3.930 16 H 0.075 0.925 17 O -0.351 6.351 18 C 0.044 3.956 19 C 0.515 3.485 20 O -0.515 6.515 21 N -0.626 5.626 22 C 0.087 3.913 23 C 0.073 3.927 24 C -0.129 4.129 25 H 0.093 0.907 26 C 0.076 3.924 27 O -0.389 6.389 28 C 0.058 3.942 29 C 0.035 3.965 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -4.040 -11.845 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.197 4.197 3 C 0.071 3.929 4 H 0.056 0.944 5 C -0.550 4.550 6 H 0.100 0.900 7 C -0.121 4.121 8 N -0.523 5.523 9 Si 0.687 3.313 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.182 1.182 13 N -0.225 5.225 14 C -0.109 4.109 15 C 0.012 3.988 16 H 0.092 0.908 17 O -0.268 6.268 18 C -0.036 4.036 19 C 0.303 3.697 20 O -0.389 6.389 21 N -0.363 5.363 22 C -0.055 4.055 23 C -0.070 4.070 24 C -0.149 4.149 25 H 0.112 0.888 26 C 0.000 4.000 27 O -0.308 6.308 28 C -0.019 4.019 29 C -0.075 4.075 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.852 -3.005 -12.422 16.137 hybrid contribution 0.008 -1.719 1.082 2.031 sum -9.844 -4.724 -11.340 15.742 Atomic orbital electron populations 1.22272 0.96747 1.00465 1.02160 1.22559 0.96696 1.00893 0.99536 1.19908 0.96498 0.89242 0.87244 0.94363 1.20819 1.28692 1.16839 0.88660 0.90004 1.24805 0.95629 0.95320 0.96368 1.69973 1.34686 1.46438 1.01220 0.87240 0.84830 0.80911 0.78346 1.20518 1.21543 1.18168 1.63165 1.14051 1.43235 1.02004 1.23417 0.89729 1.00714 0.97009 1.23345 0.90551 0.92810 0.92088 0.90778 1.88023 1.14009 1.63698 1.61083 1.22255 0.84204 0.98346 0.98780 1.20398 0.81800 0.83581 0.83961 1.90729 1.70144 1.42884 1.35165 1.47680 1.06480 1.42664 1.39447 1.21603 0.95525 0.94003 0.94371 1.21912 0.98632 0.94830 0.91641 1.23432 0.93963 0.99994 0.97462 0.88846 1.23178 0.80199 0.97172 0.99470 1.88779 1.21123 1.90541 1.30378 1.23353 0.95830 0.99360 0.83354 1.23911 0.94567 0.97282 0.91699 0.89197 0.93344 0.95463 0.89208 0.94447 0.92553 0.92612 0.91026 0.87749 0.89744 0.90534 0.92807 0.91150 0.90396 0.90092 0.91528 0.91818 0.90896 0.89565 0.90706 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.23 37.16 0.31 -2.60 16 2 C -0.16 -3.10 4.96 -26.74 -0.13 -3.23 16 3 C 0.18 3.88 2.08 -68.86 -0.14 3.74 16 4 H 0.04 0.88 6.67 -51.93 -0.35 0.53 16 5 C -0.51 -12.99 6.40 -34.44 -0.22 -13.21 16 6 H 0.08 2.28 6.88 -52.49 -0.36 1.92 16 7 C 0.08 2.17 5.33 -17.82 -0.09 2.08 16 8 N -0.89 -25.01 13.96 55.43 0.77 -24.24 16 9 Si 0.86 20.08 26.02 -169.99 -4.42 15.66 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.26 -5.65 5.44 56.52 0.31 -5.34 16 13 N -0.50 -9.79 4.55 -217.05 -0.99 -10.77 16 14 C 0.02 0.35 4.48 -3.56 -0.02 0.34 16 15 C 0.07 1.07 2.54 -26.12 -0.07 1.01 16 16 H 0.07 1.02 5.62 -51.93 -0.29 0.73 16 17 O -0.35 -5.45 8.26 -55.14 -0.46 -5.91 16 18 C 0.04 0.54 4.58 36.00 0.16 0.70 16 19 C 0.52 6.97 7.75 -10.99 -0.09 6.88 16 20 O -0.52 -9.16 16.08 -14.36 -0.23 -9.39 16 21 N -0.63 -6.25 3.27 -189.51 -0.62 -6.87 16 22 C 0.09 0.73 10.48 59.85 0.63 1.36 16 23 C 0.07 0.46 10.60 59.85 0.63 1.10 16 24 C -0.13 -1.98 4.05 -88.22 -0.36 -2.34 16 25 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 26 C 0.08 1.26 6.36 37.98 0.24 1.50 16 27 O -0.39 -6.82 11.51 -35.23 -0.41 -7.23 16 28 C 0.06 0.97 7.46 37.92 0.28 1.26 16 29 C 0.03 0.58 3.22 -65.45 -0.21 0.37 16 30 H 0.09 1.47 5.29 -51.93 -0.27 1.20 16 31 H 0.05 0.77 3.07 -51.93 -0.16 0.61 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.91 5.85 -51.93 -0.30 1.60 16 34 H 0.04 0.66 5.47 -51.93 -0.28 0.38 16 35 H 0.06 1.18 5.10 -51.93 -0.26 0.91 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.07 1.43 7.99 -51.93 -0.42 1.02 16 38 H 0.10 2.05 3.40 -51.93 -0.18 1.87 16 39 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 40 H 0.08 0.73 7.73 -51.93 -0.40 0.32 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 43 H 0.08 0.79 7.42 -51.93 -0.39 0.40 16 44 H 0.08 0.47 5.77 -51.93 -0.30 0.17 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 1.34 7.50 -51.93 -0.39 0.95 16 48 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.07 1.34 7.85 -51.93 -0.41 0.94 16 50 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -31.52 364.62 -7.70 -39.22 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.77 Total: 5.09 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 0.93 Total: -1.05 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.84 Total: -41.88 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -1.09 Total: -22.52 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.42 Total: 15.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.52 -7.70 -39.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.592 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds