Wall clock time and date at job start Tue Mar 31 2020 15:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47432 * 171.61550 * 3 2 1 5 5 C 1.50701 * 109.47165 * 51.61599 * 3 2 1 6 6 H 1.07995 * 119.99900 * 244.52867 * 5 3 2 7 7 C 1.37872 * 119.99971 * 64.52286 * 5 3 2 8 8 N 1.31516 * 120.00143 * 198.50505 * 7 5 3 9 9 Si 1.86800 * 120.00158 * 18.50622 * 7 5 3 10 10 H 1.48497 * 109.47269 * 92.66281 * 9 7 5 11 11 H 1.48501 * 109.47415 * 212.66562 * 9 7 5 12 12 H 1.48498 * 109.47093 * 332.66648 * 9 7 5 13 13 N 1.46906 * 109.47146 * 291.61491 * 3 2 1 14 14 C 1.46828 * 110.99693 * 71.49623 * 13 3 2 15 15 C 1.53584 * 107.90135 * 238.10414 * 14 13 3 16 16 H 1.08997 * 110.29872 * 102.92031 * 15 14 13 17 17 O 1.42898 * 110.29649 * 224.96301 * 15 14 13 18 18 C 1.42905 * 113.99934 * 268.54432 * 17 15 14 19 19 C 1.50697 * 109.47089 * 180.02562 * 18 17 15 20 20 O 1.21290 * 120.00034 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00413 * 179.97438 * 19 18 17 22 22 C 1.46498 * 120.00761 * 180.02562 * 21 19 18 23 23 C 1.46504 * 119.99326 * 359.72607 * 21 19 18 24 24 C 1.53588 * 105.20243 * 343.89492 * 15 14 13 25 25 H 1.09003 * 112.81759 * 147.12239 * 24 15 14 26 26 C 1.54560 * 110.01791 * 274.92024 * 24 15 14 27 27 O 1.44473 * 103.24703 * 148.83910 * 26 24 15 28 28 C 1.43681 * 107.05722 * 319.74272 * 27 26 24 29 29 C 1.47305 * 111.00171 * 308.97494 * 13 3 2 30 30 H 1.09004 * 112.47447 * 12.73656 * 29 13 3 31 31 H 1.09002 * 109.47117 * 73.25759 * 1 2 3 32 32 H 1.09002 * 109.47004 * 193.25284 * 1 2 3 33 33 H 1.08993 * 109.46998 * 313.25365 * 1 2 3 34 34 H 1.09002 * 109.46898 * 240.00273 * 2 1 3 35 35 H 1.09001 * 109.47285 * 120.00277 * 2 1 3 36 36 H 0.96995 * 120.00064 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.78088 * 118.49825 * 14 13 3 38 38 H 1.09002 * 109.78131 * 357.70913 * 14 13 3 39 39 H 1.08995 * 109.46978 * 60.00240 * 18 17 15 40 40 H 1.09003 * 109.46965 * 300.00246 * 18 17 15 41 41 H 1.09003 * 109.47040 * 89.99926 * 22 21 19 42 42 H 1.08993 * 109.47136 * 209.99986 * 22 21 19 43 43 H 1.08998 * 109.46644 * 330.00183 * 22 21 19 44 44 H 1.08998 * 109.47266 * 359.97438 * 23 21 19 45 45 H 1.09001 * 109.47337 * 120.00435 * 23 21 19 46 46 H 1.09005 * 109.46998 * 239.99806 * 23 21 19 47 47 H 1.08999 * 110.65936 * 30.39752 * 26 24 15 48 48 H 1.09000 * 110.66060 * 267.28092 * 26 24 15 49 49 H 1.08997 * 109.84471 * 266.01492 * 28 27 26 50 50 H 1.09007 * 109.92576 * 145.04135 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1196 1.4461 0.1498 5 6 1.3757 2.2102 1.1137 6 1 0.7186 3.0356 0.8834 7 6 1.6068 1.8586 2.4267 8 7 0.7816 2.2583 3.3695 9 14 3.0920 0.8145 2.8665 10 1 4.2309 1.6986 3.2219 11 1 2.7606 -0.0552 4.0238 12 1 3.4652 -0.0301 1.7036 13 7 1.7222 2.0742 -1.2876 14 6 0.2819 2.3344 -1.4048 15 6 -0.2302 1.6015 -2.6535 16 1 -0.7581 0.6916 -2.3680 17 8 -1.0896 2.4550 -3.4117 18 6 -2.4717 2.3438 -3.0658 19 6 -3.2812 3.2825 -3.9229 20 8 -2.7289 3.9779 -4.7491 21 7 -4.6188 3.3485 -3.7722 22 6 -5.4059 4.2606 -4.6059 23 6 -5.2866 2.5033 -2.7793 24 6 1.0287 1.2577 -3.4634 25 1 0.9350 0.3210 -4.0130 26 6 1.4287 2.4561 -4.3537 27 8 2.8672 2.3461 -4.4301 28 6 3.3312 1.9707 -3.1231 29 6 2.1731 1.2365 -2.4123 30 1 2.4471 0.2293 -2.0980 31 1 -0.3633 0.2960 -0.9841 32 1 -0.3633 -1.0003 0.2356 33 1 -0.3633 0.7041 0.7484 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.9439 2.0106 4.2931 37 1 0.1078 3.4054 -1.5084 38 1 -0.2336 1.9604 -0.5202 39 1 -2.6054 2.6035 -2.0157 40 1 -2.8067 1.3200 -3.2324 41 1 -5.7167 3.7453 -5.5147 42 1 -6.2871 4.5879 -4.0542 43 1 -4.7992 5.1271 -4.8689 44 1 -4.5450 1.8930 -2.2639 45 1 -5.8056 3.1328 -2.0564 46 1 -6.0063 1.8549 -3.2791 47 1 1.1392 3.3967 -3.8852 48 1 0.9828 2.3651 -5.3441 49 1 3.6068 2.8613 -2.5584 50 1 4.1917 1.3073 -3.2107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:15 Heat of formation + Delta-G solvation = -93.144033 kcal Electronic energy + Delta-G solvation = -30487.518978 eV Core-core repulsion = 26516.055310 eV Total energy + Delta-G solvation = -3971.463668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04092 -40.89067 -38.74367 -38.31863 -36.57986 -35.05387 -33.50796 -31.92821 -30.68786 -30.21238 -29.33588 -28.22009 -27.37231 -26.19293 -25.11587 -23.76694 -22.62142 -21.55856 -20.87807 -20.33282 -18.50932 -18.24922 -18.13581 -17.63977 -17.23403 -16.93025 -16.64494 -16.44463 -15.98456 -15.72213 -15.59607 -15.42457 -14.95543 -14.80048 -14.59866 -14.31414 -14.08961 -13.86931 -13.54735 -13.42987 -13.36735 -13.32345 -13.12018 -12.95699 -12.86640 -12.82084 -12.60088 -12.24401 -12.06031 -11.89547 -11.75022 -11.67732 -11.56192 -11.14363 -11.04968 -10.88226 -10.63309 -10.51886 -10.36894 -9.74871 -8.89428 -8.25630 -6.18115 1.35046 1.42830 1.47679 1.47917 1.69684 2.38939 2.69120 3.04568 3.10079 3.17570 3.47324 3.51536 3.71536 3.84069 4.06480 4.14971 4.18397 4.24095 4.28176 4.32912 4.36726 4.41419 4.42330 4.44621 4.51389 4.54457 4.65509 4.75470 4.78194 4.89494 4.90011 4.91070 4.93628 4.98171 5.06915 5.12686 5.13291 5.32563 5.36046 5.42407 5.43422 5.62353 5.74581 5.87191 6.03620 6.13520 6.27856 6.39665 6.70754 6.84063 7.07091 7.41987 8.89893 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.004253 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.013581 B = 6581.995727 C = 8187.944021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C 0.183 3.817 4 H 0.029 0.971 5 C -0.501 4.501 6 H 0.042 0.958 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.913 3.087 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.229 1.229 13 N -0.520 5.520 14 C 0.025 3.975 15 C 0.083 3.917 16 H 0.101 0.899 17 O -0.371 6.371 18 C 0.039 3.961 19 C 0.507 3.493 20 O -0.572 6.572 21 N -0.620 5.620 22 C 0.083 3.917 23 C 0.065 3.935 24 C -0.120 4.120 25 H 0.127 0.873 26 C 0.078 3.922 27 O -0.398 6.398 28 C 0.057 3.943 29 C 0.035 3.965 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 -7.246 -13.197 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C 0.075 3.925 4 H 0.047 0.953 5 C -0.539 4.539 6 H 0.060 0.940 7 C -0.166 4.166 8 N -0.573 5.573 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.152 1.152 13 N -0.244 5.244 14 C -0.103 4.103 15 C 0.025 3.975 16 H 0.119 0.881 17 O -0.289 6.289 18 C -0.040 4.040 19 C 0.295 3.705 20 O -0.451 6.451 21 N -0.355 5.355 22 C -0.059 4.059 23 C -0.077 4.077 24 C -0.140 4.140 25 H 0.145 0.855 26 C 0.001 3.999 27 O -0.317 6.317 28 C -0.020 4.020 29 C -0.074 4.074 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.116 0.884 49 H 0.071 0.929 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.431 -6.231 -13.778 18.370 hybrid contribution 0.050 -0.576 1.473 1.583 sum -10.380 -6.807 -12.305 17.478 Atomic orbital electron populations 1.22150 0.95778 1.00700 1.02264 1.22481 0.97600 0.98926 1.00481 1.19724 0.95451 0.90339 0.87007 0.95277 1.20947 1.27368 1.15576 0.90014 0.94021 1.25467 0.97840 0.96994 0.96346 1.70097 1.36686 1.48944 1.01535 0.86365 0.81208 0.79672 0.78866 1.21266 1.21675 1.15219 1.62998 1.14895 1.44380 1.02102 1.23243 0.89329 0.99325 0.98387 1.23168 0.90970 0.92964 0.90435 0.88117 1.88016 1.15711 1.64186 1.60989 1.22498 0.82572 1.00121 0.98793 1.20731 0.82996 0.83245 0.83514 1.90700 1.71493 1.45211 1.37708 1.47844 1.05626 1.42520 1.39525 1.21746 0.95776 0.93133 0.95291 1.22203 0.99127 0.94999 0.91346 1.23497 0.93076 1.00663 0.96726 0.85504 1.23116 0.79909 0.96673 1.00169 1.88777 1.21632 1.90629 1.30705 1.23390 0.96756 0.98997 0.82850 1.23996 0.95128 0.97368 0.90878 0.87533 0.91168 0.93281 0.93038 0.91292 0.93643 0.92794 0.94159 0.89176 0.89085 0.86815 0.91762 0.88130 0.92821 0.89439 0.90272 0.89444 0.93819 0.88436 0.92906 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.23 71.98 0.59 -4.58 16 2 C -0.16 -5.68 4.96 30.59 0.15 -5.52 16 3 C 0.18 7.79 2.08 44.17 0.09 7.88 16 4 H 0.03 1.30 6.67 -2.39 -0.02 1.29 16 5 C -0.50 -26.07 6.40 25.60 0.16 -25.91 16 6 H 0.04 2.46 6.88 -2.91 -0.02 2.44 16 7 C 0.03 1.75 5.33 84.65 0.45 2.20 16 8 N -0.93 -54.47 13.96 21.45 0.30 -54.17 16 9 Si 0.91 41.28 26.02 68.60 1.79 43.06 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.23 -9.25 5.44 99.48 0.54 -8.71 16 13 N -0.52 -20.06 4.55 -840.60 -3.83 -23.89 16 14 C 0.03 0.93 4.48 86.51 0.39 1.32 16 15 C 0.08 2.35 2.54 30.99 0.08 2.43 16 16 H 0.10 2.34 5.62 -2.39 -0.01 2.33 16 17 O -0.37 -11.20 8.26 -129.94 -1.07 -12.27 16 18 C 0.04 0.90 4.58 71.24 0.33 1.23 16 19 C 0.51 13.49 7.75 87.66 0.68 14.17 16 20 O -0.57 -20.97 16.08 15.98 0.26 -20.71 16 21 N -0.62 -11.48 3.27 -871.88 -2.85 -14.33 16 22 C 0.08 1.29 10.48 127.77 1.34 2.63 16 23 C 0.06 0.64 10.60 127.77 1.35 1.99 16 24 C -0.12 -3.33 4.05 -9.24 -0.04 -3.37 16 25 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 26 C 0.08 2.48 6.36 72.51 0.46 2.94 16 27 O -0.40 -13.37 11.51 -148.98 -1.71 -15.08 16 28 C 0.06 1.81 7.46 72.48 0.54 2.35 16 29 C 0.03 1.08 3.22 46.16 0.15 1.23 16 30 H 0.11 2.99 5.29 -2.38 -0.01 2.98 16 31 H 0.07 2.02 3.07 -2.39 -0.01 2.01 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 2.17 5.85 -2.39 -0.01 2.16 16 34 H 0.07 2.10 5.47 -2.39 -0.01 2.09 16 35 H 0.04 1.75 5.10 -2.39 -0.01 1.74 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 38 H 0.09 3.59 3.40 -2.39 -0.01 3.58 16 39 H 0.09 1.95 7.80 -2.39 -0.02 1.93 16 40 H 0.11 1.74 7.73 -2.39 -0.02 1.72 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 43 H 0.05 1.12 7.42 -2.39 -0.02 1.10 16 44 H 0.09 0.76 5.77 -2.39 -0.01 0.75 16 45 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.04 1.64 7.50 -2.39 -0.02 1.63 16 48 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 49 H 0.05 1.89 7.85 -2.39 -0.02 1.87 16 50 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -72.77 364.62 0.39 -72.38 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.79 Total: 24.02 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.73 Total: 0.99 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -6.38 Total: -92.40 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -2.53 Total: -48.07 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.79 Total: 43.06 kcal Total: -72.77 0.39 -72.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.763 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds