Wall clock time and date at job start Tue Mar 31 2020 15:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46763 * 2 1 4 4 H 1.09006 * 109.47155 * 304.60955 * 3 2 1 5 5 C 1.50703 * 109.47273 * 184.61107 * 3 2 1 6 6 H 1.07991 * 120.00329 * 240.00478 * 5 3 2 7 7 C 1.37877 * 119.99823 * 59.99744 * 5 3 2 8 8 N 1.31523 * 120.00308 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47481 * 60.00099 * 9 7 5 11 11 H 1.48507 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46931 * 299.99991 * 9 7 5 13 13 N 1.46891 * 109.47195 * 64.60934 * 3 2 1 14 14 C 1.48605 * 111.00240 * 183.51641 * 13 3 2 15 15 C 1.54461 * 104.19172 * 199.45890 * 14 13 3 16 16 C 1.54182 * 104.92928 * 26.82231 * 15 14 13 17 17 H 1.09005 * 111.31381 * 117.28205 * 16 15 14 18 18 O 1.43122 * 109.43886 * 240.71004 * 16 15 14 19 19 C 1.45078 * 108.94971 * 106.90847 * 18 16 15 20 20 H 1.08996 * 110.56833 * 269.79061 * 19 18 16 21 21 C 1.50703 * 110.14792 * 147.44117 * 19 18 16 22 22 O 1.21284 * 120.00159 * 359.80562 * 21 19 18 23 23 N 1.34772 * 119.99988 * 179.80608 * 21 19 18 24 24 C 1.46509 * 119.99868 * 180.02562 * 23 21 19 25 25 C 1.53002 * 109.46808 * 180.02562 * 24 23 21 26 26 O 1.42896 * 109.47602 * 65.00004 * 25 24 23 27 27 C 1.42898 * 114.00304 * 180.02562 * 26 25 24 28 28 C 1.54963 * 104.74481 * 28.72683 * 19 18 16 29 29 C 1.48452 * 110.99819 * 68.05653 * 13 3 2 30 30 H 1.08998 * 113.22495 * 34.26704 * 29 13 3 31 31 H 1.09005 * 109.46680 * 182.78286 * 1 2 3 32 32 H 1.09000 * 109.47119 * 302.78049 * 1 2 3 33 33 H 1.09001 * 109.46847 * 62.78681 * 1 2 3 34 34 H 1.09002 * 109.47141 * 240.00362 * 2 1 3 35 35 H 1.08989 * 109.47411 * 120.00060 * 2 1 3 36 36 H 0.96991 * 120.00208 * 179.97438 * 8 7 5 37 37 H 1.09008 * 110.48534 * 80.78178 * 14 13 3 38 38 H 1.08998 * 110.48671 * 318.13702 * 14 13 3 39 39 H 1.09003 * 110.34874 * 267.96121 * 15 14 13 40 40 H 1.08997 * 110.34819 * 145.68392 * 15 14 13 41 41 H 0.96996 * 120.00165 * 359.97438 * 23 21 19 42 42 H 1.08997 * 109.46871 * 299.99721 * 24 23 21 43 43 H 1.08991 * 109.47260 * 60.00057 * 24 23 21 44 44 H 1.09002 * 109.46773 * 185.00255 * 25 24 23 45 45 H 1.09000 * 109.47108 * 304.99491 * 25 24 23 46 46 H 1.08996 * 109.47130 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.47027 * 299.99836 * 27 26 25 48 48 H 1.08998 * 109.47031 * 59.99812 * 27 26 25 49 49 H 1.09001 * 111.09677 * 203.88196 * 28 19 18 50 50 H 1.09006 * 111.13717 * 79.80583 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6107 1.9796 -0.8459 5 6 3.5426 1.4442 -0.1142 6 1 4.1429 1.8904 0.6647 7 6 4.1511 0.8758 -1.2132 8 7 3.4201 0.3326 -2.1621 9 14 6.0137 0.8772 -1.3545 10 1 6.5982 0.1451 -0.2023 11 1 6.4147 0.2110 -2.6197 12 1 6.5091 2.2771 -1.3542 13 7 1.6433 2.1021 1.2511 14 6 2.0486 3.5318 1.2513 15 6 2.0335 3.9295 2.7437 16 6 2.2967 2.6163 3.5075 17 1 3.2263 2.6672 4.0745 18 8 1.1833 2.3296 4.3599 19 6 0.4306 1.2249 3.7961 20 1 -0.3438 1.5931 3.1232 21 6 -0.1794 0.3968 4.8976 22 8 0.0025 0.7016 6.0573 23 7 -0.9272 -0.6826 4.5939 24 6 -1.5206 -1.4873 5.6648 25 6 -2.3135 -2.6443 5.0535 26 8 -1.4201 -3.5252 4.3695 27 6 -2.0628 -4.6457 3.7585 28 6 1.4773 0.3938 3.0120 29 6 2.3620 1.5182 2.4114 30 1 3.3778 1.2027 2.1733 31 1 -0.3633 -1.0265 0.0499 32 1 -0.3633 0.5564 0.8640 33 1 -0.3633 0.4700 -0.9139 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8481 -0.0669 -2.9353 37 1 1.3325 4.1314 0.6893 38 1 3.0504 3.6443 0.8366 39 1 1.0608 4.3385 3.0171 40 1 2.8218 4.6531 2.9511 41 1 -1.0730 -0.9262 3.6665 42 1 -0.7301 -1.8852 6.3009 43 1 -2.1875 -0.8642 6.2606 44 1 -2.8274 -3.1905 5.8445 45 1 -3.0460 -2.2506 4.3488 46 1 -1.3171 -5.2654 3.2607 47 1 -2.5719 -5.2335 4.5224 48 1 -2.7898 -4.2931 3.0269 49 1 1.0028 -0.1940 2.2262 50 1 2.0544 -0.2440 3.6816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:07 Heat of formation + Delta-G solvation = -112.556892 kcal Electronic energy + Delta-G solvation = -30160.460471 eV Core-core repulsion = 26188.154998 eV Total energy + Delta-G solvation = -3972.305473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.38655 -39.10628 -38.04938 -36.25704 -34.65793 -33.67878 -32.14806 -31.07983 -29.87050 -29.24376 -27.57236 -26.44981 -25.97205 -23.48190 -23.06111 -22.22894 -20.61752 -20.49285 -19.99875 -19.04330 -17.47272 -16.99331 -16.72942 -16.38098 -15.79609 -15.67595 -15.24778 -14.92332 -14.78874 -14.41228 -14.22976 -13.84464 -13.82830 -13.27321 -13.15040 -12.89179 -12.78061 -12.40896 -12.08671 -12.01976 -11.98372 -11.58481 -11.47540 -11.35029 -11.09971 -11.02789 -10.90686 -10.69960 -10.63900 -10.48212 -10.19857 -10.04654 -9.99928 -9.78332 -9.73293 -9.42897 -9.15875 -9.07169 -9.01236 -8.41381 -7.40573 -6.08045 -4.20799 2.79945 3.03425 3.23112 3.28813 3.31571 3.45937 4.27561 4.33045 4.62748 4.76839 4.85278 4.94949 4.99093 5.10169 5.11431 5.13956 5.17943 5.29890 5.37933 5.43135 5.47524 5.55783 5.67373 5.75590 5.82331 5.92092 6.16331 6.21416 6.27277 6.34082 6.36996 6.39780 6.42567 6.53301 6.56392 6.62741 6.77564 6.82512 6.92986 7.04114 7.19844 7.27484 7.49307 7.58718 7.65688 7.84554 8.03810 8.08797 8.33152 8.36642 8.87879 9.46765 10.92127 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.004091 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.995032 B = 6841.838520 C = 8313.901012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.203 3.797 4 H 0.040 0.960 5 C -0.547 4.547 6 H 0.058 0.942 7 C 0.072 3.928 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.501 5.501 14 C 0.036 3.964 15 C -0.138 4.138 16 C 0.071 3.929 17 H 0.087 0.913 18 O -0.351 6.351 19 C 0.074 3.926 20 H 0.102 0.898 21 C 0.517 3.483 22 O -0.531 6.531 23 N -0.726 5.726 24 C 0.124 3.876 25 C 0.048 3.952 26 O -0.386 6.386 27 C 0.031 3.969 28 C -0.136 4.136 29 C 0.043 3.957 30 H 0.101 0.899 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.406 0.594 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.040 0.960 48 H 0.043 0.957 49 H 0.109 0.891 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 -5.116 9.366 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.096 3.904 4 H 0.058 0.942 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.225 5.225 14 C -0.092 4.092 15 C -0.176 4.176 16 C 0.012 3.988 17 H 0.104 0.896 18 O -0.270 6.270 19 C 0.014 3.986 20 H 0.119 0.881 21 C 0.303 3.697 22 O -0.407 6.407 23 N -0.381 5.381 24 C 0.000 4.000 25 C -0.029 4.029 26 O -0.305 6.305 27 C -0.065 4.065 28 C -0.174 4.174 29 C -0.067 4.067 30 H 0.119 0.881 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.241 0.759 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.127 0.873 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.193 -4.904 10.247 15.948 hybrid contribution 1.633 -0.295 -1.008 1.941 sum -9.560 -5.199 9.239 14.275 Atomic orbital electron populations 1.21794 0.98994 0.98535 1.00711 1.21714 0.92095 0.99230 1.02353 1.19387 0.93242 0.91375 0.86400 0.94205 1.21639 0.92612 1.38540 1.05830 0.92391 1.24884 0.97807 0.94866 0.95577 1.69854 1.34991 1.37802 1.09390 0.86757 0.86141 0.78286 0.77447 1.20265 1.21237 1.20327 1.65856 1.50845 1.01428 1.04374 1.23011 1.00586 0.91242 0.94403 1.22786 1.02045 0.96828 0.95938 1.23511 0.89137 0.95239 0.90885 0.89551 1.88761 1.40194 1.50088 1.47932 1.22956 0.96302 0.87819 0.91543 0.88071 1.20749 0.77883 0.80528 0.90507 1.90679 1.59247 1.69790 1.20968 1.45832 1.53256 1.28585 1.10402 1.21327 0.97837 0.90490 0.90344 1.22816 0.92581 0.91060 0.96446 1.87970 1.34120 1.37011 1.71385 1.22770 0.98604 0.88446 0.96723 1.23419 0.96656 0.97965 0.99401 1.24030 0.98502 0.92798 0.91323 0.88120 0.95411 0.93302 0.94071 0.88950 0.94167 0.92767 0.91400 0.92280 0.90790 0.91678 0.75949 0.90669 0.90041 0.91700 0.92387 0.89357 0.94164 0.93855 0.87268 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.07 37.16 0.34 -2.22 16 2 C -0.12 -2.47 4.71 -26.73 -0.13 -2.59 16 3 C 0.20 4.56 1.78 -68.87 -0.12 4.44 16 4 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.55 -13.53 6.50 -34.44 -0.22 -13.75 16 6 H 0.06 1.43 5.78 -52.49 -0.30 1.13 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -23.50 11.30 55.43 0.63 -22.87 16 9 Si 0.89 20.21 29.54 -169.99 -5.02 15.18 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.50 -9.62 4.17 -213.70 -0.89 -10.51 16 14 C 0.04 0.65 6.30 -2.11 -0.01 0.64 16 15 C -0.14 -2.23 6.78 -25.35 -0.17 -2.40 16 16 C 0.07 1.22 4.47 -24.90 -0.11 1.11 16 17 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 18 O -0.35 -6.50 10.24 -54.50 -0.56 -7.06 16 19 C 0.07 1.21 3.68 -26.85 -0.10 1.11 16 20 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 21 C 0.52 8.30 7.20 -10.99 -0.08 8.22 16 22 O -0.53 -10.45 16.54 -13.72 -0.23 -10.67 16 23 N -0.73 -8.96 5.49 -60.29 -0.33 -9.29 16 24 C 0.12 1.29 6.06 -4.04 -0.02 1.26 16 25 C 0.05 0.38 6.07 37.16 0.23 0.61 16 26 O -0.39 -3.94 10.65 -35.23 -0.38 -4.32 16 27 C 0.03 0.23 11.01 101.05 1.11 1.34 16 28 C -0.14 -2.26 5.42 -24.55 -0.13 -2.39 16 29 C 0.04 0.78 2.67 -64.49 -0.17 0.61 16 30 H 0.10 2.06 5.90 -51.93 -0.31 1.76 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.81 7.01 -51.93 -0.36 0.45 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 2.27 5.96 -51.93 -0.31 1.96 16 35 H 0.04 0.83 5.32 -51.94 -0.28 0.56 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.06 1.18 6.52 -51.93 -0.34 0.84 16 39 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.41 4.44 8.47 -40.82 -0.35 4.09 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.11 1.79 3.95 -51.93 -0.21 1.58 16 50 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -29.68 383.49 -9.03 -38.70 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.33 Total: 7.31 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 0.30 Total: -2.25 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.60 Total: -42.68 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.16 Total: -22.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.68 -9.03 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.853 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds