Wall clock time and date at job start Tue Mar 31 2020 15:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46763 * 2 1 4 4 H 1.09006 * 109.47155 * 304.60955 * 3 2 1 5 5 C 1.50703 * 109.47273 * 184.61107 * 3 2 1 6 6 H 1.07991 * 120.00329 * 240.00478 * 5 3 2 7 7 C 1.37877 * 119.99823 * 59.99744 * 5 3 2 8 8 N 1.31523 * 120.00308 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47481 * 60.00099 * 9 7 5 11 11 H 1.48507 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46931 * 299.99991 * 9 7 5 13 13 N 1.46891 * 109.47195 * 64.60934 * 3 2 1 14 14 C 1.48605 * 111.00240 * 183.51641 * 13 3 2 15 15 C 1.54461 * 104.19172 * 199.45890 * 14 13 3 16 16 C 1.54182 * 104.92928 * 26.82231 * 15 14 13 17 17 H 1.09005 * 111.31381 * 117.28205 * 16 15 14 18 18 O 1.43122 * 109.43886 * 240.71004 * 16 15 14 19 19 C 1.45078 * 108.94971 * 106.90847 * 18 16 15 20 20 H 1.08996 * 110.56833 * 269.79061 * 19 18 16 21 21 C 1.50703 * 110.14792 * 147.44117 * 19 18 16 22 22 O 1.21284 * 120.00159 * 359.80562 * 21 19 18 23 23 N 1.34772 * 119.99988 * 179.80608 * 21 19 18 24 24 C 1.46509 * 119.99868 * 180.02562 * 23 21 19 25 25 C 1.53002 * 109.46808 * 180.02562 * 24 23 21 26 26 O 1.42896 * 109.47602 * 65.00004 * 25 24 23 27 27 C 1.42898 * 114.00304 * 180.02562 * 26 25 24 28 28 C 1.54963 * 104.74481 * 28.72683 * 19 18 16 29 29 C 1.48452 * 110.99819 * 68.05653 * 13 3 2 30 30 H 1.08998 * 113.22495 * 34.26704 * 29 13 3 31 31 H 1.09005 * 109.46680 * 182.78286 * 1 2 3 32 32 H 1.09000 * 109.47119 * 302.78049 * 1 2 3 33 33 H 1.09001 * 109.46847 * 62.78681 * 1 2 3 34 34 H 1.09002 * 109.47141 * 240.00362 * 2 1 3 35 35 H 1.08989 * 109.47411 * 120.00060 * 2 1 3 36 36 H 0.96991 * 120.00208 * 179.97438 * 8 7 5 37 37 H 1.09008 * 110.48534 * 80.78178 * 14 13 3 38 38 H 1.08998 * 110.48671 * 318.13702 * 14 13 3 39 39 H 1.09003 * 110.34874 * 267.96121 * 15 14 13 40 40 H 1.08997 * 110.34819 * 145.68392 * 15 14 13 41 41 H 0.96996 * 120.00165 * 359.97438 * 23 21 19 42 42 H 1.08997 * 109.46871 * 299.99721 * 24 23 21 43 43 H 1.08991 * 109.47260 * 60.00057 * 24 23 21 44 44 H 1.09002 * 109.46773 * 185.00255 * 25 24 23 45 45 H 1.09000 * 109.47108 * 304.99491 * 25 24 23 46 46 H 1.08996 * 109.47130 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.47027 * 299.99836 * 27 26 25 48 48 H 1.08998 * 109.47031 * 59.99812 * 27 26 25 49 49 H 1.09001 * 111.09677 * 203.88196 * 28 19 18 50 50 H 1.09006 * 111.13717 * 79.80583 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6107 1.9796 -0.8459 5 6 3.5426 1.4442 -0.1142 6 1 4.1429 1.8904 0.6647 7 6 4.1511 0.8758 -1.2132 8 7 3.4201 0.3326 -2.1621 9 14 6.0137 0.8772 -1.3545 10 1 6.5982 0.1451 -0.2023 11 1 6.4147 0.2110 -2.6197 12 1 6.5091 2.2771 -1.3542 13 7 1.6433 2.1021 1.2511 14 6 2.0486 3.5318 1.2513 15 6 2.0335 3.9295 2.7437 16 6 2.2967 2.6163 3.5075 17 1 3.2263 2.6672 4.0745 18 8 1.1833 2.3296 4.3599 19 6 0.4306 1.2249 3.7961 20 1 -0.3438 1.5931 3.1232 21 6 -0.1794 0.3968 4.8976 22 8 0.0025 0.7016 6.0573 23 7 -0.9272 -0.6826 4.5939 24 6 -1.5206 -1.4873 5.6648 25 6 -2.3135 -2.6443 5.0535 26 8 -1.4201 -3.5252 4.3695 27 6 -2.0628 -4.6457 3.7585 28 6 1.4773 0.3938 3.0120 29 6 2.3620 1.5182 2.4114 30 1 3.3778 1.2027 2.1733 31 1 -0.3633 -1.0265 0.0499 32 1 -0.3633 0.5564 0.8640 33 1 -0.3633 0.4700 -0.9139 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8481 -0.0669 -2.9353 37 1 1.3325 4.1314 0.6893 38 1 3.0504 3.6443 0.8366 39 1 1.0608 4.3385 3.0171 40 1 2.8218 4.6531 2.9511 41 1 -1.0730 -0.9262 3.6665 42 1 -0.7301 -1.8852 6.3009 43 1 -2.1875 -0.8642 6.2606 44 1 -2.8274 -3.1905 5.8445 45 1 -3.0460 -2.2506 4.3488 46 1 -1.3171 -5.2654 3.2607 47 1 -2.5719 -5.2335 4.5224 48 1 -2.7898 -4.2931 3.0269 49 1 1.0028 -0.1940 2.2262 50 1 2.0544 -0.2440 3.6816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:06 Heat of formation + Delta-G solvation = -132.999881 kcal Electronic energy + Delta-G solvation = -30161.346945 eV Core-core repulsion = 26188.154998 eV Total energy + Delta-G solvation = -3973.191947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77329 -40.34458 -38.83146 -37.80320 -35.73904 -35.29525 -33.85337 -32.52500 -30.87779 -30.77734 -28.82609 -27.80221 -27.05415 -24.90597 -24.48930 -23.20852 -22.17305 -21.85156 -21.31666 -20.70077 -18.77480 -18.40860 -17.71804 -17.39135 -17.17269 -16.88899 -16.53914 -16.19597 -15.96803 -15.64628 -15.64448 -15.21124 -15.01013 -14.86224 -14.57837 -14.43959 -13.83873 -13.68851 -13.49896 -13.23719 -13.09151 -12.90582 -12.72615 -12.65882 -12.61663 -12.50188 -12.30419 -12.20556 -12.10195 -11.95193 -11.77203 -11.63098 -11.49981 -11.27733 -11.02117 -10.87456 -10.62490 -10.37699 -10.33976 -10.12262 -9.09490 -8.02641 -6.21678 1.39629 1.42242 1.47229 1.54243 1.92821 2.41965 2.83423 2.98477 3.18554 3.37076 3.57029 3.78463 3.85622 3.96737 4.06644 4.19900 4.23978 4.39955 4.42750 4.45146 4.50316 4.58233 4.62253 4.64912 4.66088 4.71812 4.80955 4.88184 4.91048 4.94960 4.96345 5.02515 5.05037 5.06056 5.13937 5.23247 5.33293 5.40674 5.49088 5.52769 5.67119 5.86197 5.92382 6.09120 6.19193 6.24215 6.34831 6.49623 6.50502 6.97939 7.19296 7.48249 8.93994 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.004091 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.995032 B = 6841.838520 C = 8313.901012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C 0.210 3.790 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.492 5.492 14 C 0.033 3.967 15 C -0.126 4.126 16 C 0.072 3.928 17 H 0.096 0.904 18 O -0.368 6.368 19 C 0.079 3.921 20 H 0.111 0.889 21 C 0.518 3.482 22 O -0.572 6.572 23 N -0.710 5.710 24 C 0.119 3.881 25 C 0.053 3.947 26 O -0.416 6.416 27 C 0.027 3.973 28 C -0.127 4.127 29 C 0.039 3.961 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.112 0.888 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -5.554 10.342 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.148 4.148 3 C 0.103 3.897 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.073 0.927 7 C -0.173 4.173 8 N -0.546 5.546 9 Si 0.765 3.235 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.215 5.215 14 C -0.095 4.095 15 C -0.164 4.164 16 C 0.013 3.987 17 H 0.114 0.886 18 O -0.286 6.286 19 C 0.018 3.982 20 H 0.128 0.872 21 C 0.305 3.695 22 O -0.451 6.451 23 N -0.363 5.363 24 C -0.004 4.004 25 C -0.024 4.024 26 O -0.336 6.336 27 C -0.069 4.069 28 C -0.165 4.165 29 C -0.070 4.070 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.251 0.749 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.130 0.870 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.369 -5.366 11.209 17.533 hybrid contribution 1.970 -0.172 -1.306 2.370 sum -10.399 -5.537 9.903 15.390 Atomic orbital electron populations 1.21666 0.96177 1.00239 1.00815 1.21541 0.94568 0.97825 1.00824 1.19158 0.91844 0.91999 0.86727 0.97691 1.21923 0.93990 1.37589 1.05411 0.92749 1.25493 1.01075 0.95045 0.95637 1.69980 1.36111 1.38751 1.09767 0.85930 0.82287 0.78084 0.77220 1.20021 1.21289 1.20229 1.65823 1.50547 1.01892 1.03274 1.23043 0.99538 0.90776 0.96135 1.22712 1.03197 0.96698 0.93756 1.23549 0.89462 0.95132 0.90534 0.88640 1.88752 1.40566 1.50832 1.48484 1.22995 0.96104 0.87336 0.91722 0.87168 1.20690 0.78065 0.81141 0.89652 1.90663 1.61083 1.71077 1.22291 1.45782 1.51713 1.27322 1.11523 1.21508 0.97720 0.91242 0.89907 1.22853 0.91969 0.90178 0.97380 1.87919 1.35672 1.38046 1.71919 1.22897 0.98802 0.87902 0.97334 1.23312 0.96450 0.97410 0.99319 1.23966 0.97597 0.94078 0.91359 0.90326 0.93034 0.91845 0.95099 0.92257 0.93806 0.93054 0.90806 0.94314 0.90114 0.89697 0.74900 0.92172 0.89135 0.89417 0.90762 0.89504 0.92706 0.92862 0.86959 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.07 71.98 0.65 -3.87 16 2 C -0.11 -4.65 4.71 30.60 0.14 -4.50 16 3 C 0.21 9.57 1.78 44.17 0.08 9.65 16 4 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 5 C -0.55 -27.57 6.50 25.60 0.17 -27.40 16 6 H 0.05 2.72 5.78 -2.92 -0.02 2.70 16 7 C 0.03 1.45 5.29 84.65 0.45 1.90 16 8 N -0.91 -49.26 11.30 21.45 0.24 -49.02 16 9 Si 0.94 41.82 29.54 68.60 2.03 43.84 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.49 -18.65 4.17 -830.02 -3.46 -22.10 16 14 C 0.03 1.20 6.30 86.47 0.54 1.74 16 15 C -0.13 -3.84 6.78 31.49 0.21 -3.62 16 16 C 0.07 2.37 4.47 31.78 0.14 2.52 16 17 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 18 O -0.37 -13.06 10.24 -130.55 -1.34 -14.40 16 19 C 0.08 2.44 3.68 30.52 0.11 2.55 16 20 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 21 C 0.52 15.93 7.20 87.66 0.63 16.56 16 22 O -0.57 -22.08 16.54 15.39 0.25 -21.82 16 23 N -0.71 -16.19 5.49 -463.05 -2.54 -18.73 16 24 C 0.12 2.26 6.06 86.38 0.52 2.79 16 25 C 0.05 0.70 6.07 71.98 0.44 1.14 16 26 O -0.42 -7.59 10.65 -148.98 -1.59 -9.18 16 27 C 0.03 0.33 11.01 113.37 1.25 1.58 16 28 C -0.13 -4.04 5.42 32.01 0.17 -3.87 16 29 C 0.04 1.42 2.67 46.14 0.12 1.54 16 30 H 0.08 3.23 5.90 -2.39 -0.01 3.21 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.06 1.98 7.01 -2.39 -0.02 1.96 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 2.95 5.96 -2.39 -0.01 2.94 16 35 H 0.04 1.80 5.32 -2.39 -0.01 1.79 16 36 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 37 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.04 1.55 6.52 -2.39 -0.02 1.53 16 39 H 0.08 2.40 7.95 -2.39 -0.02 2.38 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 41 H 0.41 8.05 8.47 -92.71 -0.79 7.26 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.05 0.50 8.14 -2.38 -0.02 0.49 16 48 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.11 3.49 3.95 -2.39 -0.01 3.48 16 50 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 Total: -1.00 -64.37 383.49 -0.61 -64.98 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.15 Total: 27.73 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.64 Total: -1.30 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -5.76 Total: -89.85 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -2.67 Total: -45.40 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -64.37 -0.61 -64.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.023 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds