Wall clock time and date at job start Tue Mar 31 2020 15:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 H 1.09000 * 109.47083 * 184.20628 * 3 2 1 5 5 C 1.50696 * 109.47199 * 64.20308 * 3 2 1 6 6 H 1.08002 * 120.00621 * 240.00288 * 5 3 2 7 7 C 1.37877 * 119.99731 * 60.00098 * 5 3 2 8 8 N 1.31519 * 120.00438 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46993 * 59.99930 * 9 7 5 11 11 H 1.48504 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47277 * 300.00206 * 9 7 5 13 13 N 1.46907 * 109.46887 * 304.20429 * 3 2 1 14 14 C 1.47641 * 111.00097 * 306.19353 * 13 3 2 15 15 C 1.50724 * 108.49455 * 153.18475 * 14 13 3 16 16 O 1.43960 * 111.95154 * 93.31730 * 15 14 13 17 17 C 1.44223 * 116.11368 * 319.20259 * 16 15 14 18 18 C 1.50708 * 112.78190 * 318.73888 * 17 16 15 19 19 C 1.53248 * 110.56503 * 211.06611 * 18 17 16 20 20 N 1.47135 * 108.46410 * 174.15840 * 19 18 17 21 21 C 1.34778 * 120.95183 * 129.69286 * 20 19 18 22 22 C 1.50709 * 119.99870 * 180.27184 * 21 20 19 23 23 O 1.21283 * 120.00238 * 359.97438 * 21 20 19 24 24 C 1.47151 * 118.09673 * 309.96365 * 20 19 18 25 25 C 1.52890 * 108.59438 * 50.08708 * 24 20 19 26 26 O 1.43011 * 109.22663 * 307.80015 * 25 24 20 27 27 C 1.40450 * 110.99495 * 177.79258 * 13 3 2 28 28 H 1.09001 * 109.47432 * 184.93144 * 1 2 3 29 29 H 1.08993 * 109.47153 * 304.93304 * 1 2 3 30 30 H 1.09000 * 109.46891 * 64.92996 * 1 2 3 31 31 H 1.08998 * 109.47259 * 239.99771 * 2 1 3 32 32 H 1.09000 * 109.46654 * 119.99782 * 2 1 3 33 33 H 0.97001 * 120.00470 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.63295 * 272.89111 * 14 13 3 35 35 H 1.09007 * 109.63104 * 33.48574 * 14 13 3 36 36 H 1.08996 * 108.98884 * 213.95024 * 15 14 13 37 37 H 1.08996 * 108.99110 * 332.76287 * 15 14 13 38 38 H 1.08998 * 108.82262 * 197.88513 * 17 16 15 39 39 H 1.09003 * 108.81486 * 79.59037 * 17 16 15 40 40 H 1.08995 * 109.63574 * 54.45943 * 19 18 17 41 41 H 1.09002 * 109.63521 * 293.84788 * 19 18 17 42 42 H 1.09004 * 109.46809 * 179.72198 * 22 21 20 43 43 H 1.08994 * 109.47187 * 299.72606 * 22 21 20 44 44 H 1.08997 * 109.46856 * 59.72304 * 22 21 20 45 45 H 1.09002 * 109.68609 * 169.86368 * 24 20 19 46 46 H 1.09003 * 109.68481 * 290.42152 * 24 20 19 47 47 H 1.08997 * 109.59500 * 187.81228 * 25 24 20 48 48 H 1.09000 * 109.38358 * 67.65856 * 25 24 20 49 49 H 1.08997 * 109.07698 * 67.26454 * 27 13 3 50 50 H 1.09002 * 109.08072 * 308.29561 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1275 1.4434 -0.0754 5 6 1.6246 2.1222 1.2792 6 1 0.9990 3.0020 1.2448 7 6 2.0431 1.6210 2.4935 8 7 2.8044 0.5494 2.5356 9 14 1.5287 2.4639 4.0792 10 1 0.0472 2.4632 4.1821 11 1 2.1062 1.7351 5.2371 12 1 2.0242 3.8638 4.0790 13 7 1.4692 2.1637 -1.1455 14 6 1.7314 1.4441 -2.4077 15 6 0.6459 1.7955 -3.3927 16 8 1.0193 2.9037 -4.2323 17 6 1.7127 3.9879 -3.5814 18 6 1.1357 4.3216 -2.2297 19 6 1.3069 5.8137 -1.9248 20 7 0.6073 6.1154 -0.6661 21 6 1.2246 6.7864 0.3264 22 6 0.4895 7.0786 1.6092 23 8 2.3733 7.1504 0.1894 24 6 -0.7837 5.6583 -0.5196 25 6 -0.8521 4.1772 -0.8930 26 8 -0.2541 3.9874 -2.1781 27 6 1.8775 3.5075 -1.1483 28 1 -0.3634 -1.0239 0.0883 29 1 -0.3633 0.5884 0.8424 30 1 -0.3633 0.4355 -0.9309 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0991 0.1969 3.3899 34 1 2.6998 1.7456 -2.8069 35 1 1.7259 0.3695 -2.2246 36 1 0.4423 0.9280 -4.0204 37 1 -0.2593 2.0566 -2.8447 38 1 1.6566 4.8724 -4.2158 39 1 2.7600 3.7118 -3.4583 40 1 0.8771 6.4045 -2.7337 41 1 2.3665 6.0469 -1.8200 42 1 1.1468 7.6205 2.2893 43 1 -0.3902 7.6850 1.3939 44 1 0.1804 6.1416 2.0723 45 1 -1.1070 5.7907 0.5129 46 1 -1.4305 6.2316 -1.1837 47 1 -1.8931 3.8559 -0.9246 48 1 -0.3114 3.5914 -0.1496 49 1 2.9495 3.5537 -1.3404 50 1 1.6729 3.9442 -0.1708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:40 Heat of formation + Delta-G solvation = -87.621962 kcal Electronic energy + Delta-G solvation = -32294.683338 eV Core-core repulsion = 28323.459125 eV Total energy + Delta-G solvation = -3971.224213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84923 -39.12779 -37.29833 -36.40472 -34.48293 -33.31672 -32.66593 -30.96414 -29.94013 -29.46162 -28.05143 -26.08636 -25.93799 -24.83390 -23.29992 -22.68517 -21.09133 -19.85449 -18.96409 -18.86271 -17.11889 -16.96059 -16.51118 -16.06154 -15.58397 -15.45885 -15.26406 -15.07790 -14.87180 -14.30456 -13.88860 -13.69564 -13.63151 -13.34771 -13.06372 -12.95192 -12.75530 -12.46061 -12.33227 -12.14609 -12.04454 -11.76311 -11.65345 -11.46601 -11.25441 -10.98455 -10.89353 -10.73611 -10.64793 -10.30363 -10.20659 -9.98747 -9.87963 -9.71178 -9.57767 -9.34633 -9.05159 -8.91713 -8.46206 -8.26641 -7.14121 -6.09510 -4.14582 2.72951 2.99795 3.22286 3.27722 3.29173 3.76827 4.29472 4.35057 4.56478 4.74603 4.87726 5.01014 5.10270 5.15757 5.21847 5.26799 5.29189 5.40760 5.43974 5.55245 5.61616 5.70508 5.73703 5.77758 5.81652 5.94142 6.01791 6.10626 6.22760 6.28901 6.36406 6.44960 6.47262 6.53115 6.57896 6.67897 6.77774 7.06314 7.24750 7.32905 7.40271 7.43818 7.52818 7.61843 7.72509 7.73452 8.22666 8.25332 8.27462 8.52977 8.89341 9.49582 10.96296 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.007808 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.163966 B = 3585.251577 C = 5537.705360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.223 3.777 4 H -0.004 1.004 5 C -0.499 4.499 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.535 5.535 14 C 0.019 3.981 15 C 0.063 3.937 16 O -0.387 6.387 17 C 0.085 3.915 18 C 0.072 3.928 19 C 0.097 3.903 20 N -0.609 5.609 21 C 0.518 3.482 22 C -0.174 4.174 23 O -0.547 6.547 24 C 0.073 3.927 25 C 0.037 3.963 26 O -0.344 6.344 27 C 0.058 3.942 28 H 0.015 0.985 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.015 0.985 32 H 0.094 0.906 33 H 0.262 0.738 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.012 0.988 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 7.378 -6.989 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.118 3.882 4 H 0.013 0.987 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.259 5.259 14 C -0.109 4.109 15 C -0.013 4.013 16 O -0.306 6.306 17 C 0.008 3.992 18 C 0.030 3.970 19 C -0.026 4.026 20 N -0.344 5.344 21 C 0.307 3.693 22 C -0.234 4.234 23 O -0.424 6.424 24 C -0.050 4.050 25 C -0.040 4.040 26 O -0.262 6.262 27 C -0.072 4.072 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.030 0.970 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.522 7.396 -7.196 12.770 hybrid contribution 0.806 0.454 1.419 1.694 sum -6.716 7.850 -5.777 11.836 Atomic orbital electron populations 1.21467 0.97176 0.97710 1.01410 1.21639 0.95157 0.98148 1.00210 1.19219 0.91986 0.90565 0.86414 0.98690 1.20929 1.31227 1.11757 0.89800 0.92402 1.24875 0.95092 0.94991 0.98879 1.69846 1.35137 1.22001 1.25687 0.86722 0.78860 0.79739 0.83148 1.20136 1.21277 1.20271 1.59181 1.62935 1.00804 1.02989 1.22497 0.96439 1.00794 0.91165 1.22639 0.98917 0.87387 0.92373 1.88146 1.77727 1.28743 1.35990 1.22166 0.95081 0.90573 0.91415 1.22485 0.84275 0.93149 0.97087 1.22100 0.99653 0.95094 0.85792 1.48031 1.13971 1.56294 1.16131 1.20760 0.86747 0.76906 0.84883 1.21942 1.01967 1.04178 0.95295 1.90697 1.17748 1.52728 1.81253 1.22446 0.82153 0.97552 1.02849 1.23025 0.99501 0.93427 0.88067 1.88026 1.20995 1.86743 1.30425 1.21566 0.95107 0.90800 0.99746 0.96543 0.92368 0.93959 0.96610 0.88794 0.92836 0.95236 0.89079 0.90828 0.89535 0.89739 0.92350 0.90917 0.88336 0.89062 0.89611 0.88969 0.89011 0.91125 0.88431 0.88916 0.97036 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.49 37.16 0.35 -2.06 16 2 C -0.11 -2.52 4.99 -26.73 -0.13 -2.65 16 3 C 0.22 5.17 1.81 -68.86 -0.12 5.05 16 4 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 5 C -0.50 -12.32 6.66 -34.44 -0.23 -12.55 16 6 H 0.06 1.41 5.14 -52.49 -0.27 1.14 16 7 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -24.07 11.29 55.43 0.63 -23.44 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.53 -10.36 2.22 -232.99 -0.52 -10.88 16 14 C 0.02 0.33 4.67 -4.56 -0.02 0.31 16 15 C 0.06 1.01 6.24 36.02 0.22 1.24 16 16 O -0.39 -6.37 10.69 -54.02 -0.58 -6.94 16 17 C 0.09 1.27 5.73 36.01 0.21 1.47 16 18 C 0.07 1.11 0.73 -90.93 -0.07 1.05 16 19 C 0.10 1.41 5.18 -3.57 -0.02 1.39 16 20 N -0.61 -8.70 2.23 -172.56 -0.38 -9.08 16 21 C 0.52 8.14 7.82 -10.98 -0.09 8.05 16 22 C -0.17 -2.06 8.70 36.01 0.31 -1.75 16 23 O -0.55 -10.72 16.55 5.56 0.09 -10.63 16 24 C 0.07 0.86 6.52 -3.74 -0.02 0.83 16 25 C 0.04 0.52 6.48 37.10 0.24 0.76 16 26 O -0.34 -5.36 6.98 -54.02 -0.38 -5.74 16 27 C 0.06 1.10 2.88 -6.46 -0.02 1.08 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 30 H 0.04 0.79 7.24 -51.93 -0.38 0.42 16 31 H 0.02 0.32 6.06 -51.93 -0.31 0.01 16 32 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.03 0.54 6.87 -51.93 -0.36 0.18 16 35 H 0.09 1.63 5.21 -51.93 -0.27 1.36 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.49 5.87 -51.93 -0.30 1.19 16 38 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 39 H 0.06 0.88 6.62 -51.93 -0.34 0.54 16 40 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 41 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 42 H 0.09 1.07 8.12 -51.93 -0.42 0.65 16 43 H 0.09 0.74 8.03 -51.93 -0.42 0.33 16 44 H 0.09 1.08 7.64 -51.93 -0.40 0.69 16 45 H 0.09 0.90 6.05 -51.93 -0.31 0.59 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.09 1.60 4.73 -51.93 -0.25 1.36 16 49 H 0.01 0.24 7.62 -51.93 -0.40 -0.15 16 50 H 0.10 2.02 4.33 -51.93 -0.23 1.80 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -29.28 358.49 -8.00 -37.28 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.77 Total: 5.21 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.52 Total: 3.76 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.28 Total: -43.40 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.86 Total: -23.31 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.28 -8.00 -37.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.338 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds