Wall clock time and date at job start Tue Mar 31 2020 15:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 H 1.09000 * 109.47083 * 184.20628 * 3 2 1 5 5 C 1.50696 * 109.47199 * 64.20308 * 3 2 1 6 6 H 1.08002 * 120.00621 * 240.00288 * 5 3 2 7 7 C 1.37877 * 119.99731 * 60.00098 * 5 3 2 8 8 N 1.31519 * 120.00438 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46993 * 59.99930 * 9 7 5 11 11 H 1.48504 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47277 * 300.00206 * 9 7 5 13 13 N 1.46907 * 109.46887 * 304.20429 * 3 2 1 14 14 C 1.47641 * 111.00097 * 306.19353 * 13 3 2 15 15 C 1.50724 * 108.49455 * 153.18475 * 14 13 3 16 16 O 1.43960 * 111.95154 * 93.31730 * 15 14 13 17 17 C 1.44223 * 116.11368 * 319.20259 * 16 15 14 18 18 C 1.50708 * 112.78190 * 318.73888 * 17 16 15 19 19 C 1.53248 * 110.56503 * 211.06611 * 18 17 16 20 20 N 1.47135 * 108.46410 * 174.15840 * 19 18 17 21 21 C 1.34778 * 120.95183 * 129.69286 * 20 19 18 22 22 C 1.50709 * 119.99870 * 180.27184 * 21 20 19 23 23 O 1.21283 * 120.00238 * 359.97438 * 21 20 19 24 24 C 1.47151 * 118.09673 * 309.96365 * 20 19 18 25 25 C 1.52890 * 108.59438 * 50.08708 * 24 20 19 26 26 O 1.43011 * 109.22663 * 307.80015 * 25 24 20 27 27 C 1.40450 * 110.99495 * 177.79258 * 13 3 2 28 28 H 1.09001 * 109.47432 * 184.93144 * 1 2 3 29 29 H 1.08993 * 109.47153 * 304.93304 * 1 2 3 30 30 H 1.09000 * 109.46891 * 64.92996 * 1 2 3 31 31 H 1.08998 * 109.47259 * 239.99771 * 2 1 3 32 32 H 1.09000 * 109.46654 * 119.99782 * 2 1 3 33 33 H 0.97001 * 120.00470 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.63295 * 272.89111 * 14 13 3 35 35 H 1.09007 * 109.63104 * 33.48574 * 14 13 3 36 36 H 1.08996 * 108.98884 * 213.95024 * 15 14 13 37 37 H 1.08996 * 108.99110 * 332.76287 * 15 14 13 38 38 H 1.08998 * 108.82262 * 197.88513 * 17 16 15 39 39 H 1.09003 * 108.81486 * 79.59037 * 17 16 15 40 40 H 1.08995 * 109.63574 * 54.45943 * 19 18 17 41 41 H 1.09002 * 109.63521 * 293.84788 * 19 18 17 42 42 H 1.09004 * 109.46809 * 179.72198 * 22 21 20 43 43 H 1.08994 * 109.47187 * 299.72606 * 22 21 20 44 44 H 1.08997 * 109.46856 * 59.72304 * 22 21 20 45 45 H 1.09002 * 109.68609 * 169.86368 * 24 20 19 46 46 H 1.09003 * 109.68481 * 290.42152 * 24 20 19 47 47 H 1.08997 * 109.59500 * 187.81228 * 25 24 20 48 48 H 1.09000 * 109.38358 * 67.65856 * 25 24 20 49 49 H 1.08997 * 109.07698 * 67.26454 * 27 13 3 50 50 H 1.09002 * 109.08072 * 308.29561 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1275 1.4434 -0.0754 5 6 1.6246 2.1222 1.2792 6 1 0.9990 3.0020 1.2448 7 6 2.0431 1.6210 2.4935 8 7 2.8044 0.5494 2.5356 9 14 1.5287 2.4639 4.0792 10 1 0.0472 2.4632 4.1821 11 1 2.1062 1.7351 5.2371 12 1 2.0242 3.8638 4.0790 13 7 1.4692 2.1637 -1.1455 14 6 1.7314 1.4441 -2.4077 15 6 0.6459 1.7955 -3.3927 16 8 1.0193 2.9037 -4.2323 17 6 1.7127 3.9879 -3.5814 18 6 1.1357 4.3216 -2.2297 19 6 1.3069 5.8137 -1.9248 20 7 0.6073 6.1154 -0.6661 21 6 1.2246 6.7864 0.3264 22 6 0.4895 7.0786 1.6092 23 8 2.3733 7.1504 0.1894 24 6 -0.7837 5.6583 -0.5196 25 6 -0.8521 4.1772 -0.8930 26 8 -0.2541 3.9874 -2.1781 27 6 1.8775 3.5075 -1.1483 28 1 -0.3634 -1.0239 0.0883 29 1 -0.3633 0.5884 0.8424 30 1 -0.3633 0.4355 -0.9309 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0991 0.1969 3.3899 34 1 2.6998 1.7456 -2.8069 35 1 1.7259 0.3695 -2.2246 36 1 0.4423 0.9280 -4.0204 37 1 -0.2593 2.0566 -2.8447 38 1 1.6566 4.8724 -4.2158 39 1 2.7600 3.7118 -3.4583 40 1 0.8771 6.4045 -2.7337 41 1 2.3665 6.0469 -1.8200 42 1 1.1468 7.6205 2.2893 43 1 -0.3902 7.6850 1.3939 44 1 0.1804 6.1416 2.0723 45 1 -1.1070 5.7907 0.5129 46 1 -1.4305 6.2316 -1.1837 47 1 -1.8931 3.8559 -0.9246 48 1 -0.3114 3.5914 -0.1496 49 1 2.9495 3.5537 -1.3404 50 1 1.6729 3.9442 -0.1708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:39 Heat of formation + Delta-G solvation = -105.919895 kcal Electronic energy + Delta-G solvation = -32295.476796 eV Core-core repulsion = 28323.459125 eV Total energy + Delta-G solvation = -3972.017671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13688 -40.44057 -38.68038 -37.88274 -35.69767 -34.96537 -34.11577 -32.69970 -31.11416 -30.72827 -29.36357 -27.76957 -27.33072 -26.27748 -24.67160 -24.12412 -22.61958 -21.14434 -20.66547 -20.04643 -18.58168 -18.22711 -17.91420 -17.63198 -16.97512 -16.80169 -16.68732 -16.35473 -16.32745 -15.72104 -15.39773 -15.09150 -14.94800 -14.83154 -14.39213 -14.21342 -14.01110 -13.89777 -13.77580 -13.62374 -13.20085 -13.08198 -12.95550 -12.85836 -12.78744 -12.70889 -12.45104 -12.28715 -12.16578 -11.86395 -11.75695 -11.58896 -11.43172 -11.27411 -10.92861 -10.81056 -10.78615 -10.43999 -10.30512 -9.46015 -8.84866 -8.08556 -6.18801 1.40345 1.42056 1.47497 1.54471 1.91304 2.40561 2.54602 3.05428 3.19356 3.26075 3.58529 3.61877 3.74826 3.84840 4.05800 4.17050 4.26883 4.31650 4.35957 4.42398 4.47673 4.49202 4.55067 4.59040 4.63240 4.66551 4.69812 4.71837 4.76338 4.82919 4.91423 4.95985 5.04723 5.10997 5.20261 5.32562 5.35572 5.37388 5.47564 5.52004 5.73585 5.79186 5.92270 6.15098 6.28008 6.32414 6.35345 6.47603 6.80240 6.96253 7.08107 7.48595 8.96356 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.007808 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.163966 B = 3585.251577 C = 5537.705360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.108 4.108 3 C 0.229 3.771 4 H -0.058 1.058 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.943 3.057 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.277 1.277 13 N -0.521 5.521 14 C 0.019 3.981 15 C 0.072 3.928 16 O -0.391 6.391 17 C 0.081 3.919 18 C 0.087 3.913 19 C 0.098 3.902 20 N -0.610 5.610 21 C 0.506 3.494 22 C -0.169 4.169 23 O -0.598 6.598 24 C 0.075 3.925 25 C 0.034 3.966 26 O -0.347 6.347 27 C 0.064 3.936 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.258 0.742 34 H 0.021 0.979 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.056 0.944 49 H -0.018 1.018 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 8.577 -7.881 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C 0.123 3.877 4 H -0.040 1.040 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.769 3.231 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.202 1.202 13 N -0.245 5.245 14 C -0.108 4.108 15 C -0.004 4.004 16 O -0.310 6.310 17 C 0.004 3.996 18 C 0.045 3.955 19 C -0.026 4.026 20 N -0.343 5.343 21 C 0.297 3.703 22 C -0.228 4.228 23 O -0.480 6.480 24 C -0.047 4.047 25 C -0.042 4.042 26 O -0.266 6.266 27 C -0.066 4.066 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.143 0.857 44 H 0.113 0.887 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.142 0.858 48 H 0.075 0.925 49 H 0.000 1.000 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.731 8.594 -8.109 15.961 hybrid contribution 1.829 0.057 1.647 2.462 sum -8.902 8.650 -6.462 13.994 Atomic orbital electron populations 1.21298 0.94959 0.98622 1.01303 1.21497 0.96938 0.96990 0.99248 1.19014 0.89010 0.91886 0.87786 1.04013 1.21156 1.30394 1.11483 0.90373 0.92087 1.25611 0.95355 0.95611 1.01906 1.70007 1.36539 1.23461 1.25947 0.85822 0.79401 0.78452 0.79387 1.18232 1.21888 1.20229 1.59210 1.61742 1.00839 1.02701 1.22570 0.97043 1.00467 0.90699 1.22557 0.97409 0.88283 0.92195 1.88144 1.77776 1.28939 1.36167 1.22290 0.94428 0.91320 0.91565 1.22282 0.84126 0.93137 0.95939 1.22074 0.99080 0.94415 0.87023 1.48190 1.15001 1.55499 1.15645 1.21540 0.86377 0.76334 0.86075 1.21973 1.02904 1.04909 0.92976 1.90671 1.20028 1.55001 1.82290 1.22644 0.80882 0.96056 1.05106 1.23112 1.00093 0.94688 0.86354 1.88021 1.20293 1.86953 1.31285 1.21516 0.93972 0.90973 1.00162 0.94762 0.94187 0.92470 0.95388 0.91991 0.93282 0.96090 0.89151 0.88434 0.90055 0.86756 0.93227 0.88130 0.90328 0.89394 0.85685 0.88661 0.86701 0.88180 0.85818 0.92537 1.00026 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.09 9.49 71.98 0.68 -3.41 16 2 C -0.11 -4.92 4.99 30.60 0.15 -4.77 16 3 C 0.23 11.06 1.81 44.17 0.08 11.14 16 4 H -0.06 -3.33 8.14 -2.39 -0.02 -3.34 16 5 C -0.50 -25.19 6.66 25.60 0.17 -25.02 16 6 H 0.06 3.02 5.14 -2.91 -0.01 3.01 16 7 C 0.01 0.73 5.29 84.65 0.45 1.17 16 8 N -0.92 -51.80 11.29 21.45 0.24 -51.55 16 9 Si 0.94 41.61 29.54 68.60 2.03 43.63 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.52 -20.56 2.22 -891.05 -1.98 -22.54 16 14 C 0.02 0.68 4.67 85.42 0.40 1.08 16 15 C 0.07 2.16 6.24 71.24 0.44 2.60 16 16 O -0.39 -11.98 10.69 -131.01 -1.40 -13.38 16 17 C 0.08 2.30 5.73 71.24 0.41 2.71 16 18 C 0.09 2.62 0.73 -10.99 -0.01 2.61 16 19 C 0.10 2.71 5.18 86.34 0.45 3.16 16 20 N -0.61 -16.34 2.23 -818.25 -1.82 -18.16 16 21 C 0.51 15.46 7.82 87.66 0.69 16.14 16 22 C -0.17 -3.59 8.70 71.24 0.62 -2.97 16 23 O -0.60 -23.95 16.55 -3.04 -0.05 -24.00 16 24 C 0.07 1.48 6.52 86.22 0.56 2.05 16 25 C 0.03 0.87 6.48 71.95 0.47 1.34 16 26 O -0.35 -9.97 6.98 -131.01 -0.92 -10.89 16 27 C 0.06 2.51 2.88 87.93 0.25 2.76 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 30 H 0.06 2.04 7.24 -2.39 -0.02 2.02 16 31 H 0.03 1.17 6.06 -2.39 -0.01 1.16 16 32 H 0.06 3.25 5.97 -2.39 -0.01 3.23 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.02 0.78 6.87 -2.39 -0.02 0.76 16 35 H 0.09 3.19 5.21 -2.38 -0.01 3.18 16 36 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.08 2.59 5.87 -2.39 -0.01 2.58 16 38 H 0.11 2.59 7.69 -2.39 -0.02 2.57 16 39 H 0.05 1.50 6.62 -2.39 -0.02 1.48 16 40 H 0.10 2.26 8.00 -2.39 -0.02 2.24 16 41 H 0.08 2.52 7.08 -2.39 -0.02 2.50 16 42 H 0.09 1.94 8.12 -2.38 -0.02 1.92 16 43 H 0.12 1.65 8.03 -2.39 -0.02 1.63 16 44 H 0.09 2.00 7.64 -2.39 -0.02 1.98 16 45 H 0.11 1.77 6.05 -2.39 -0.01 1.75 16 46 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 47 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.06 1.88 4.73 -2.39 -0.01 1.87 16 49 H -0.02 -0.80 7.62 -2.39 -0.02 -0.82 16 50 H 0.07 3.18 4.33 -2.39 -0.01 3.17 16 Total: -1.00 -67.31 358.49 2.86 -64.45 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.95 Total: 21.83 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.81 Total: 10.60 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -3.56 Total: -92.25 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.37 Total: -48.27 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -67.31 2.86 -64.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.468 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds