Wall clock time and date at job start Tue Mar 31 2020 15:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 H 1.09003 * 109.46870 * 56.32267 * 3 2 1 5 5 C 1.50696 * 109.47236 * 176.32025 * 3 2 1 6 6 H 1.07996 * 120.00013 * 116.17471 * 5 3 2 7 7 C 1.37875 * 119.99898 * 296.45860 * 5 3 2 8 8 N 1.31516 * 120.00112 * 359.71799 * 7 5 3 9 9 Si 1.86799 * 119.99823 * 179.72376 * 7 5 3 10 10 H 1.48496 * 109.47600 * 89.99776 * 9 7 5 11 11 H 1.48509 * 109.47087 * 209.99268 * 9 7 5 12 12 H 1.48501 * 109.47496 * 329.99177 * 9 7 5 13 13 N 1.46904 * 109.47232 * 296.32477 * 3 2 1 14 14 C 1.47899 * 110.99615 * 301.28260 * 13 3 2 15 15 C 1.53996 * 107.05427 * 214.16029 * 14 13 3 16 16 C 1.54596 * 105.14340 * 1.22244 * 15 14 13 17 17 C 1.48533 * 110.99645 * 183.88972 * 13 3 2 18 18 H 1.08999 * 110.67031 * 41.28000 * 17 13 3 19 19 C 1.50700 * 110.66347 * 278.15020 * 17 13 3 20 20 O 1.21232 * 120.00390 * 336.79258 * 19 17 13 21 21 N 1.34784 * 119.99621 * 156.79098 * 19 17 13 22 22 C 1.34777 * 119.99866 * 179.97438 * 21 19 17 23 23 O 1.21466 * 120.00047 * 0.02562 * 22 21 19 24 24 O 1.34582 * 120.00040 * 179.97438 * 22 21 19 25 25 C 1.45205 * 116.99919 * 180.02562 * 24 22 21 26 26 C 1.53002 * 109.47108 * 60.00173 * 25 24 22 27 27 C 1.53006 * 109.46930 * 179.97438 * 25 24 22 28 28 C 1.52996 * 109.47303 * 300.00066 * 25 24 22 29 29 H 1.09008 * 109.47090 * 295.56006 * 1 2 3 30 30 H 1.08997 * 109.47505 * 55.56182 * 1 2 3 31 31 H 1.09003 * 109.47175 * 175.56284 * 1 2 3 32 32 H 1.08997 * 109.46655 * 240.00520 * 2 1 3 33 33 H 1.08989 * 109.47270 * 120.00357 * 2 1 3 34 34 H 0.96999 * 119.99930 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.92099 * 333.50714 * 14 13 3 36 36 H 1.08993 * 109.92035 * 94.80698 * 14 13 3 37 37 H 1.09002 * 110.30955 * 120.14646 * 15 14 13 38 38 H 1.09010 * 110.30504 * 242.30803 * 15 14 13 39 39 H 1.08994 * 110.72359 * 140.31481 * 16 15 14 40 40 H 1.08995 * 110.72275 * 263.42822 * 16 15 14 41 41 H 0.96996 * 120.00134 * 0.02562 * 21 19 17 42 42 H 1.09004 * 109.46792 * 59.99973 * 26 25 24 43 43 H 1.09002 * 109.46971 * 179.97438 * 26 25 24 44 44 H 1.08994 * 109.46889 * 299.99748 * 26 25 24 45 45 H 1.09008 * 109.46912 * 60.00525 * 27 25 24 46 46 H 1.09004 * 109.46788 * 179.97438 * 27 25 24 47 47 H 1.08996 * 109.47294 * 300.00297 * 27 25 24 48 48 H 1.08999 * 109.46968 * 59.99562 * 28 25 24 49 49 H 1.09002 * 109.47106 * 180.02562 * 28 25 24 50 50 H 1.09008 * 109.47220 * 300.00530 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6238 1.9750 0.8552 5 6 3.5442 1.4436 0.0912 6 1 4.1342 1.8385 -0.7226 7 6 4.1672 0.9351 1.2111 8 7 3.4487 0.4541 2.2021 9 14 6.0320 0.9293 1.3207 10 1 6.4953 2.1956 1.9427 11 1 6.4756 -0.2204 2.1496 12 1 6.6078 0.8079 -0.0427 13 7 1.6241 2.1090 -1.2414 14 6 2.1460 1.3948 -2.4267 15 6 2.4543 2.4594 -3.4959 16 6 2.1056 3.8113 -2.8320 17 6 2.1805 3.4839 -1.3195 18 1 3.2138 3.5011 -0.9728 19 6 1.3352 4.4456 -0.5247 20 8 0.1741 4.1844 -0.2941 21 7 1.8703 5.5962 -0.0701 22 6 1.1142 6.4565 0.6402 23 8 -0.0492 6.1948 0.8712 24 8 1.6485 7.6051 1.0946 25 6 0.7758 8.4836 1.8528 26 6 0.2655 7.7484 3.0939 27 6 1.5540 9.7290 2.2824 28 6 -0.4116 8.8988 0.9819 29 1 -0.3634 0.4434 0.9272 30 1 -0.3634 0.5811 -0.8475 31 1 -0.3634 -1.0246 -0.0795 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8871 0.0967 2.9901 35 1 3.0573 0.8570 -2.1648 36 1 1.3955 0.6989 -2.8012 37 1 3.5103 2.4310 -3.7647 38 1 1.8341 2.3001 -4.3782 39 1 2.8388 4.5724 -3.0986 40 1 1.1015 4.1304 -3.1111 41 1 2.7992 5.8053 -0.2549 42 1 1.1115 7.4527 3.7144 43 1 -0.3893 8.4081 3.6633 44 1 -0.2887 6.8611 2.7882 45 1 1.9178 10.2529 1.3984 46 1 0.8987 10.3886 2.8512 47 1 2.3997 9.4328 2.9030 48 1 -0.9658 8.0114 0.6762 49 1 -1.0665 9.5586 1.5510 50 1 -0.0481 9.4225 0.0976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:57 Heat of formation + Delta-G solvation = -112.574831 kcal Electronic energy + Delta-G solvation = -30158.845735 eV Core-core repulsion = 26186.539484 eV Total energy + Delta-G solvation = -3972.306251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20506 -39.61638 -38.02468 -36.30635 -34.65166 -34.20422 -33.56611 -31.75133 -29.78259 -28.91500 -27.53332 -27.44660 -26.25003 -24.55751 -23.11534 -21.73645 -21.01027 -20.14030 -19.78678 -18.84673 -18.25396 -17.16887 -16.36140 -16.33416 -15.93665 -15.60801 -14.91780 -14.66554 -14.45231 -14.24438 -13.84527 -13.61950 -13.32443 -13.06945 -12.84254 -12.70263 -12.61866 -12.28118 -12.20840 -12.01011 -11.97643 -11.77008 -11.57039 -11.45642 -11.34462 -11.13939 -10.97774 -10.84347 -10.71083 -10.56289 -10.42257 -10.36969 -10.15311 -10.06402 -9.80413 -9.68514 -9.55795 -9.17909 -9.13461 -8.43333 -7.30720 -6.07202 -4.21352 2.06732 2.31072 3.19819 3.28857 3.29134 3.39547 3.98402 4.31405 4.60241 4.64850 4.79038 4.84468 5.02948 5.07762 5.19055 5.33416 5.41719 5.44738 5.47890 5.49927 5.56404 5.65632 5.77394 5.86003 5.88271 5.90546 6.12168 6.16145 6.18800 6.23075 6.32292 6.37241 6.44014 6.52450 6.62912 6.66588 6.71988 6.76420 6.91798 7.05478 7.23990 7.25099 7.54391 7.67849 7.83090 8.03427 8.09505 8.33307 8.39143 8.45003 8.88969 9.46163 10.93697 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.004119 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.033729 B = 6795.960027 C = 7614.851324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.204 3.796 4 H 0.043 0.957 5 C -0.553 4.553 6 H 0.059 0.941 7 C 0.072 3.928 8 N -0.878 5.878 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.490 5.490 14 C 0.041 3.959 15 C -0.126 4.126 16 C -0.111 4.111 17 C 0.055 3.945 18 H 0.097 0.903 19 C 0.532 3.468 20 O -0.443 6.443 21 N -0.663 5.663 22 C 0.644 3.356 23 O -0.509 6.509 24 O -0.363 6.363 25 C 0.135 3.865 26 C -0.187 4.187 27 C -0.139 4.139 28 C -0.185 4.185 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.416 0.584 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 14.509 -5.045 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.097 3.903 4 H 0.061 0.939 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.132 4.132 8 N -0.515 5.515 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.215 5.215 14 C -0.087 4.087 15 C -0.165 4.165 16 C -0.150 4.150 17 C -0.057 4.057 18 H 0.114 0.886 19 C 0.319 3.681 20 O -0.308 6.308 21 N -0.333 5.333 22 C 0.398 3.602 23 O -0.393 6.393 24 O -0.279 6.279 25 C 0.098 3.902 26 C -0.244 4.244 27 C -0.197 4.197 28 C -0.242 4.242 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.676 14.141 -4.539 15.091 hybrid contribution 2.534 0.069 0.335 2.556 sum -0.142 14.210 -4.204 14.820 Atomic orbital electron populations 1.21728 0.98495 0.98427 1.01145 1.21522 0.92597 0.98664 1.01579 1.19475 0.92869 0.91458 0.86485 0.93944 1.21669 0.92419 1.42025 1.03119 0.92267 1.24920 0.97867 0.94793 0.95592 1.69917 1.35092 1.39748 1.06787 0.86705 0.86102 0.77749 0.78115 1.20677 1.21128 1.19882 1.64890 1.53838 0.98571 1.04229 1.22743 0.99836 0.96076 0.90095 1.22385 1.00863 0.94611 0.98610 1.22432 1.01925 0.97907 0.92688 1.22626 0.97778 0.91454 0.93863 0.88564 1.21082 0.88671 0.79473 0.78864 1.90774 1.16679 1.71973 1.51353 1.43981 1.16767 1.19996 1.52593 1.18340 0.84099 0.79895 0.77915 1.91012 1.15164 1.75668 1.57421 1.86309 1.44852 1.29616 1.67107 1.22112 0.89349 0.88185 0.90562 1.22537 1.02410 1.02888 0.96530 1.21857 1.00826 0.94850 1.02123 1.22527 0.98008 1.03725 0.99917 0.94139 0.92900 0.95612 0.94735 0.89686 0.92728 0.91602 0.91557 0.91759 0.91654 0.91195 0.90938 0.74865 0.91902 0.91079 0.89216 0.91488 0.90160 0.91339 0.89293 0.91060 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.84 37.16 0.37 -2.68 16 2 C -0.11 -2.50 5.09 -26.73 -0.14 -2.63 16 3 C 0.20 4.96 1.72 -68.86 -0.12 4.84 16 4 H 0.04 1.22 8.03 -51.93 -0.42 0.80 16 5 C -0.55 -13.83 6.30 -34.44 -0.22 -14.05 16 6 H 0.06 1.43 6.04 -52.49 -0.32 1.11 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.88 -24.28 11.58 55.43 0.64 -23.64 16 9 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.49 -10.23 4.00 -217.45 -0.87 -11.10 16 14 C 0.04 0.73 4.96 -2.75 -0.01 0.72 16 15 C -0.13 -1.80 6.93 -25.37 -0.18 -1.98 16 16 C -0.11 -1.59 6.48 -24.87 -0.16 -1.75 16 17 C 0.06 1.00 2.47 -66.94 -0.17 0.84 16 18 H 0.10 1.78 6.04 -51.93 -0.31 1.47 16 19 C 0.53 10.36 6.80 -10.98 -0.07 10.29 16 20 O -0.44 -10.52 15.06 -18.21 -0.27 -10.79 16 21 N -0.66 -10.69 5.24 -15.84 -0.08 -10.77 16 22 C 0.64 11.01 7.99 54.06 0.43 11.45 16 23 O -0.51 -10.26 10.28 -27.16 -0.28 -10.54 16 24 O -0.36 -5.15 9.93 -40.17 -0.40 -5.55 16 25 C 0.13 1.60 1.13 -90.62 -0.10 1.50 16 26 C -0.19 -2.33 8.37 37.16 0.31 -2.02 16 27 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 28 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 29 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.05 1.14 7.59 -51.93 -0.39 0.74 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.78 6.85 -51.93 -0.36 0.42 16 33 H 0.08 2.24 6.29 -51.93 -0.33 1.92 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.07 1.31 6.06 -51.93 -0.31 0.99 16 36 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 41 H 0.42 5.10 8.81 -40.82 -0.36 4.74 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 45 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -31.74 387.23 -8.41 -40.16 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.46 Total: 7.76 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 0.49 Total: 3.65 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.31 Total: -45.51 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.95 Total: -26.88 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.74 -8.41 -40.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.416 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds