Wall clock time and date at job start Tue Mar 31 2020 15:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 H 1.09003 * 109.46870 * 56.32267 * 3 2 1 5 5 C 1.50696 * 109.47236 * 176.32025 * 3 2 1 6 6 H 1.07996 * 120.00013 * 116.17471 * 5 3 2 7 7 C 1.37875 * 119.99898 * 296.45860 * 5 3 2 8 8 N 1.31516 * 120.00112 * 359.71799 * 7 5 3 9 9 Si 1.86799 * 119.99823 * 179.72376 * 7 5 3 10 10 H 1.48496 * 109.47600 * 89.99776 * 9 7 5 11 11 H 1.48509 * 109.47087 * 209.99268 * 9 7 5 12 12 H 1.48501 * 109.47496 * 329.99177 * 9 7 5 13 13 N 1.46904 * 109.47232 * 296.32477 * 3 2 1 14 14 C 1.47899 * 110.99615 * 301.28260 * 13 3 2 15 15 C 1.53996 * 107.05427 * 214.16029 * 14 13 3 16 16 C 1.54596 * 105.14340 * 1.22244 * 15 14 13 17 17 C 1.48533 * 110.99645 * 183.88972 * 13 3 2 18 18 H 1.08999 * 110.67031 * 41.28000 * 17 13 3 19 19 C 1.50700 * 110.66347 * 278.15020 * 17 13 3 20 20 O 1.21232 * 120.00390 * 336.79258 * 19 17 13 21 21 N 1.34784 * 119.99621 * 156.79098 * 19 17 13 22 22 C 1.34777 * 119.99866 * 179.97438 * 21 19 17 23 23 O 1.21466 * 120.00047 * 0.02562 * 22 21 19 24 24 O 1.34582 * 120.00040 * 179.97438 * 22 21 19 25 25 C 1.45205 * 116.99919 * 180.02562 * 24 22 21 26 26 C 1.53002 * 109.47108 * 60.00173 * 25 24 22 27 27 C 1.53006 * 109.46930 * 179.97438 * 25 24 22 28 28 C 1.52996 * 109.47303 * 300.00066 * 25 24 22 29 29 H 1.09008 * 109.47090 * 295.56006 * 1 2 3 30 30 H 1.08997 * 109.47505 * 55.56182 * 1 2 3 31 31 H 1.09003 * 109.47175 * 175.56284 * 1 2 3 32 32 H 1.08997 * 109.46655 * 240.00520 * 2 1 3 33 33 H 1.08989 * 109.47270 * 120.00357 * 2 1 3 34 34 H 0.96999 * 119.99930 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.92099 * 333.50714 * 14 13 3 36 36 H 1.08993 * 109.92035 * 94.80698 * 14 13 3 37 37 H 1.09002 * 110.30955 * 120.14646 * 15 14 13 38 38 H 1.09010 * 110.30504 * 242.30803 * 15 14 13 39 39 H 1.08994 * 110.72359 * 140.31481 * 16 15 14 40 40 H 1.08995 * 110.72275 * 263.42822 * 16 15 14 41 41 H 0.96996 * 120.00134 * 0.02562 * 21 19 17 42 42 H 1.09004 * 109.46792 * 59.99973 * 26 25 24 43 43 H 1.09002 * 109.46971 * 179.97438 * 26 25 24 44 44 H 1.08994 * 109.46889 * 299.99748 * 26 25 24 45 45 H 1.09008 * 109.46912 * 60.00525 * 27 25 24 46 46 H 1.09004 * 109.46788 * 179.97438 * 27 25 24 47 47 H 1.08996 * 109.47294 * 300.00297 * 27 25 24 48 48 H 1.08999 * 109.46968 * 59.99562 * 28 25 24 49 49 H 1.09002 * 109.47106 * 180.02562 * 28 25 24 50 50 H 1.09008 * 109.47220 * 300.00530 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6238 1.9750 0.8552 5 6 3.5442 1.4436 0.0912 6 1 4.1342 1.8385 -0.7226 7 6 4.1672 0.9351 1.2111 8 7 3.4487 0.4541 2.2021 9 14 6.0320 0.9293 1.3207 10 1 6.4953 2.1956 1.9427 11 1 6.4756 -0.2204 2.1496 12 1 6.6078 0.8079 -0.0427 13 7 1.6241 2.1090 -1.2414 14 6 2.1460 1.3948 -2.4267 15 6 2.4543 2.4594 -3.4959 16 6 2.1056 3.8113 -2.8320 17 6 2.1805 3.4839 -1.3195 18 1 3.2138 3.5011 -0.9728 19 6 1.3352 4.4456 -0.5247 20 8 0.1741 4.1844 -0.2941 21 7 1.8703 5.5962 -0.0701 22 6 1.1142 6.4565 0.6402 23 8 -0.0492 6.1948 0.8712 24 8 1.6485 7.6051 1.0946 25 6 0.7758 8.4836 1.8528 26 6 0.2655 7.7484 3.0939 27 6 1.5540 9.7290 2.2824 28 6 -0.4116 8.8988 0.9819 29 1 -0.3634 0.4434 0.9272 30 1 -0.3634 0.5811 -0.8475 31 1 -0.3634 -1.0246 -0.0795 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8871 0.0967 2.9901 35 1 3.0573 0.8570 -2.1648 36 1 1.3955 0.6989 -2.8012 37 1 3.5103 2.4310 -3.7647 38 1 1.8341 2.3001 -4.3782 39 1 2.8388 4.5724 -3.0986 40 1 1.1015 4.1304 -3.1111 41 1 2.7992 5.8053 -0.2549 42 1 1.1115 7.4527 3.7144 43 1 -0.3893 8.4081 3.6633 44 1 -0.2887 6.8611 2.7882 45 1 1.9178 10.2529 1.3984 46 1 0.8987 10.3886 2.8512 47 1 2.3997 9.4328 2.9030 48 1 -0.9658 8.0114 0.6762 49 1 -1.0665 9.5586 1.5510 50 1 -0.0481 9.4225 0.0976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:56 Heat of formation + Delta-G solvation = -133.981802 kcal Electronic energy + Delta-G solvation = -30159.774011 eV Core-core repulsion = 26186.539484 eV Total energy + Delta-G solvation = -3973.234527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56736 -41.01321 -39.48054 -37.70998 -36.07485 -35.88402 -34.72913 -33.67285 -31.35416 -30.36542 -28.41688 -28.30886 -28.12125 -25.93316 -24.92785 -23.15561 -22.44123 -21.53226 -21.08371 -20.53627 -19.59387 -18.72636 -17.91681 -17.64297 -17.31776 -17.23515 -16.24728 -16.15271 -15.83651 -15.62086 -15.18512 -14.95671 -14.77699 -14.57751 -14.49529 -14.26071 -13.80790 -13.45535 -13.36401 -13.21231 -13.12978 -12.96807 -12.91087 -12.75559 -12.70434 -12.59646 -12.51212 -12.43330 -12.36193 -12.00679 -11.87269 -11.69293 -11.56679 -11.47808 -11.46756 -11.32113 -11.25644 -11.03171 -10.68639 -10.44756 -9.00172 -8.03767 -6.26708 0.80061 0.85610 1.41249 1.43820 1.52339 1.97624 2.41697 2.75686 3.17729 3.47004 3.64269 3.70074 3.74801 3.77686 3.90112 4.14561 4.30649 4.41006 4.48044 4.54199 4.57817 4.65426 4.66016 4.72465 4.73174 4.80685 4.85126 4.86484 4.96368 4.99317 5.03048 5.08393 5.15558 5.18694 5.22964 5.24539 5.26425 5.34406 5.41463 5.47373 5.49089 5.57655 5.65063 5.76020 5.96515 6.11407 6.29916 6.48469 6.91311 6.98377 7.09912 7.45052 8.94602 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.004119 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.033729 B = 6795.960027 C = 7614.851324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.015 1.015 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.259 1.259 13 N -0.507 5.507 14 C 0.038 3.962 15 C -0.116 4.116 16 C -0.101 4.101 17 C 0.052 3.948 18 H 0.096 0.904 19 C 0.534 3.466 20 O -0.496 6.496 21 N -0.651 5.651 22 C 0.642 3.358 23 O -0.541 6.541 24 O -0.355 6.355 25 C 0.121 3.879 26 C -0.185 4.185 27 C -0.132 4.132 28 C -0.180 4.180 29 H 0.018 0.982 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.260 0.740 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.434 0.566 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.097 0.903 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 16.613 -6.978 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.003 0.997 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.183 1.183 13 N -0.232 5.232 14 C -0.090 4.090 15 C -0.154 4.154 16 C -0.139 4.139 17 C -0.060 4.060 18 H 0.114 0.886 19 C 0.322 3.678 20 O -0.365 6.365 21 N -0.323 5.323 22 C 0.396 3.604 23 O -0.428 6.428 24 O -0.270 6.270 25 C 0.085 3.915 26 C -0.242 4.242 27 C -0.189 4.189 28 C -0.237 4.237 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.274 0.726 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.125 0.875 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.731 16.291 -6.501 17.555 hybrid contribution 1.879 -0.524 0.977 2.182 sum 1.149 15.767 -5.523 16.745 Atomic orbital electron populations 1.21586 0.97109 0.99810 1.00002 1.21390 0.93806 0.98271 1.00418 1.19101 0.92440 0.91152 0.86468 0.99673 1.21938 0.92850 1.40909 1.03126 0.90999 1.25731 1.02273 0.94698 0.95377 1.70089 1.36878 1.41175 1.07427 0.85664 0.80752 0.77388 0.78524 1.20227 1.21835 1.18302 1.64726 1.54748 0.99995 1.03686 1.22794 0.98877 0.97201 0.90143 1.22371 1.02700 0.92546 0.97783 1.22487 1.03106 0.99238 0.89072 1.22765 0.96792 0.89806 0.96627 0.88632 1.21453 0.88121 0.80042 0.78141 1.90751 1.18930 1.73304 1.53490 1.43757 1.17597 1.19120 1.51849 1.18511 0.83692 0.80546 0.77606 1.91015 1.16813 1.76493 1.58437 1.86341 1.45172 1.28521 1.66944 1.22599 0.90157 0.88802 0.89947 1.22517 1.02396 1.02039 0.97275 1.21892 1.00946 0.93122 1.02913 1.22481 0.97877 1.02634 1.00742 0.96293 0.92735 0.93046 0.93696 0.92746 0.93118 0.93374 0.91422 0.89643 0.89357 0.87121 0.91359 0.72638 0.92096 0.88241 0.93217 0.90358 0.87515 0.91201 0.92930 0.88455 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 9.84 71.98 0.71 -5.00 16 2 C -0.10 -4.93 5.09 30.60 0.16 -4.77 16 3 C 0.22 10.90 1.72 44.17 0.08 10.98 16 4 H -0.01 -0.90 8.03 -2.39 -0.02 -0.92 16 5 C -0.55 -27.72 6.30 25.60 0.16 -27.56 16 6 H 0.07 3.38 6.04 -2.91 -0.02 3.36 16 7 C 0.02 1.02 5.30 84.65 0.45 1.47 16 8 N -0.92 -52.67 11.58 21.45 0.25 -52.42 16 9 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 N -0.51 -21.33 4.00 -841.90 -3.36 -24.70 16 14 C 0.04 1.31 4.96 86.45 0.43 1.74 16 15 C -0.12 -2.89 6.93 31.47 0.22 -2.68 16 16 C -0.10 -2.59 6.48 31.80 0.21 -2.39 16 17 C 0.05 1.87 2.47 44.52 0.11 1.98 16 18 H 0.10 3.43 6.04 -2.39 -0.01 3.41 16 19 C 0.53 21.27 6.80 87.66 0.60 21.87 16 20 O -0.50 -24.77 15.06 19.88 0.30 -24.47 16 21 N -0.65 -21.17 5.24 -552.88 -2.90 -24.07 16 22 C 0.64 22.49 7.99 129.79 1.04 23.53 16 23 O -0.54 -23.08 10.28 27.52 0.28 -22.80 16 24 O -0.35 -9.87 9.93 -54.91 -0.55 -10.42 16 25 C 0.12 2.73 1.13 -10.79 -0.01 2.72 16 26 C -0.19 -4.62 8.37 71.98 0.60 -4.02 16 27 C -0.13 -1.84 8.85 71.98 0.64 -1.20 16 28 C -0.18 -3.92 8.37 71.98 0.60 -3.32 16 29 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 2.39 7.59 -2.39 -0.02 2.37 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 2.06 6.85 -2.39 -0.02 2.05 16 33 H 0.05 3.00 6.29 -2.39 -0.02 2.99 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.05 1.85 6.06 -2.39 -0.01 1.83 16 36 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 41 H 0.43 10.24 8.81 -92.71 -0.82 9.43 16 42 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.66 5.88 -2.39 -0.01 1.65 16 45 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 49 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -74.60 387.23 2.15 -72.46 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.12 Total: 29.97 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.98 Total: 13.35 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -6.01 Total: -101.18 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: 0.04 Total: -57.68 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -74.60 2.15 -72.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.523 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds