Wall clock time and date at job start Tue Mar 31 2020 15:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 H 1.08996 * 109.47164 * 305.00411 * 3 2 1 5 5 C 1.53007 * 109.46850 * 65.00219 * 3 2 1 6 6 C 1.53001 * 109.46981 * 184.99817 * 3 2 1 7 7 N 1.46506 * 109.47001 * 175.00256 * 6 3 2 8 8 C 1.46496 * 119.99552 * 270.00216 * 7 6 3 9 9 C 1.53005 * 109.47123 * 263.16372 * 8 7 6 10 10 C 1.34773 * 120.00139 * 90.00038 * 7 6 3 11 11 O 1.21348 * 119.99819 * 4.27412 * 10 7 6 12 12 C 1.49453 * 120.00065 * 184.27330 * 10 7 6 13 13 O 1.21344 * 119.99753 * 354.24740 * 12 10 7 14 14 N 1.34773 * 119.99833 * 174.23834 * 12 10 7 15 15 C 1.47294 * 125.79506 * 0.02562 * 14 12 10 16 16 C 1.54322 * 107.30301 * 178.92100 * 15 14 12 17 17 C 1.55151 * 102.94627 * 337.81332 * 16 15 14 18 18 O 1.42903 * 111.00478 * 277.43038 * 17 16 15 19 19 C 1.50702 * 111.04152 * 153.59408 * 17 16 15 20 20 H 1.08003 * 119.99351 * 6.33333 * 19 17 16 21 21 C 1.37870 * 120.00259 * 186.33381 * 19 17 16 22 22 N 1.31517 * 120.00115 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00207 * 179.97438 * 21 19 17 24 24 H 1.48510 * 109.46750 * 59.99993 * 23 21 19 25 25 H 1.48501 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47090 * 300.00437 * 23 21 19 27 27 C 1.47427 * 125.64621 * 179.97438 * 14 12 10 28 28 H 1.08997 * 109.47073 * 299.99813 * 1 2 3 29 29 H 1.08995 * 109.47140 * 59.99842 * 1 2 3 30 30 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47073 * 240.00187 * 2 1 3 32 32 H 1.09003 * 109.46811 * 120.00170 * 2 1 3 33 33 H 1.08989 * 109.47377 * 59.99864 * 5 3 2 34 34 H 1.09002 * 109.46902 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46748 * 299.99498 * 5 3 2 36 36 H 1.08998 * 109.47123 * 54.99925 * 6 3 2 37 37 H 1.08999 * 109.47375 * 294.99827 * 6 3 2 38 38 H 1.08999 * 109.47488 * 23.16461 * 8 7 6 39 39 H 1.09006 * 109.46728 * 143.16990 * 8 7 6 40 40 H 1.08995 * 109.46945 * 180.02562 * 9 8 7 41 41 H 1.08999 * 109.47011 * 300.00381 * 9 8 7 42 42 H 1.08998 * 109.46954 * 60.00306 * 9 8 7 43 43 H 1.08996 * 109.85925 * 59.49629 * 15 14 12 44 44 H 1.08993 * 109.99722 * 298.42400 * 15 14 12 45 45 H 1.09007 * 110.71824 * 219.44906 * 16 15 14 46 46 H 1.09003 * 110.72563 * 96.17795 * 16 15 14 47 47 H 0.96704 * 113.99815 * 173.64806 * 18 17 16 48 48 H 0.97000 * 120.00062 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.36401 * 85.26881 * 27 14 12 50 50 H 1.08995 * 110.36920 * 323.05231 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5648 1.4442 -0.1257 7 7 4.0433 2.8238 -0.2457 8 6 4.1785 3.4396 -1.5680 9 6 5.6298 3.3240 -2.0385 10 6 4.3590 3.5262 0.8603 11 8 4.3215 2.9923 1.9494 12 6 4.7555 4.9626 0.7455 13 8 4.8945 5.4680 -0.3488 14 7 4.9584 5.6965 1.8575 15 6 4.8265 5.2153 3.2434 16 6 5.1807 6.3941 4.1742 17 6 6.0395 7.3105 3.2633 18 8 7.3967 6.8651 3.2224 19 6 5.9589 8.7472 3.7110 20 1 5.4407 8.9999 4.6243 21 6 6.5465 9.7390 2.9547 22 7 7.1770 9.4313 1.8423 23 14 6.4459 11.5199 3.5092 24 1 7.0842 11.6599 4.8428 25 1 7.1523 12.3841 2.5297 26 1 5.0218 11.9315 3.5965 27 6 5.3510 7.1172 1.8895 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5875 2.1492 34 1 1.9982 3.1543 1.3073 35 1 0.5489 2.1252 1.3969 36 1 3.8571 0.8799 -1.0112 37 1 4.0030 0.9835 0.7597 38 1 3.5255 2.9285 -2.2754 39 1 3.8983 4.4914 -1.5093 40 1 5.7305 3.7826 -3.0221 41 1 6.2829 3.8351 -1.3311 42 1 5.9100 2.2723 -2.0972 43 1 5.5147 4.3877 3.4150 44 1 3.8028 4.8907 3.4294 45 1 5.7604 6.0488 5.0303 46 1 4.2789 6.9117 4.5014 47 1 7.9498 7.3463 2.5918 48 1 7.5907 10.1290 1.3104 49 1 4.4709 7.7558 1.8135 50 1 6.0488 7.3362 1.0813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328427212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:33 Heat of formation + Delta-G solvation = -118.571905 kcal Electronic energy + Delta-G solvation = -29936.023673 eV Core-core repulsion = 25963.457369 eV Total energy + Delta-G solvation = -3972.566303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65481 -38.74269 -37.30318 -36.93821 -35.35645 -34.08858 -32.25344 -31.06285 -30.21718 -29.42186 -27.93752 -27.29734 -25.71315 -24.25004 -23.58244 -22.73688 -21.25834 -19.99905 -19.64473 -18.69751 -17.24756 -16.79699 -16.73071 -16.10669 -15.51881 -15.21061 -15.08106 -14.96016 -14.52950 -14.36540 -13.96057 -13.57997 -13.51954 -13.15471 -13.00928 -12.92742 -12.79671 -12.41806 -12.25909 -12.12905 -12.02666 -11.89281 -11.66294 -11.53125 -11.45864 -11.18569 -11.07441 -11.03889 -10.85360 -10.78001 -10.71959 -10.63304 -10.50651 -10.40898 -10.20386 -9.36674 -8.94212 -8.73189 -8.62573 -8.36492 -7.86900 -6.30096 -4.39684 1.85663 2.63342 3.21178 3.26900 3.28938 3.61919 3.77245 4.24978 4.55856 4.62533 4.70051 4.75867 4.97409 5.04522 5.09768 5.30724 5.30963 5.44307 5.48938 5.50221 5.51151 5.59981 5.64922 5.79132 5.80048 5.81257 5.83962 5.85567 5.90193 5.96562 6.06732 6.10987 6.20853 6.30724 6.34457 6.35411 6.51960 6.55891 6.73228 6.83580 6.86815 7.18038 7.22943 7.31108 7.71635 7.86683 8.01082 8.10601 8.50271 8.64227 9.27822 9.36336 10.76990 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.003120 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.493773 B = 8970.802583 C = 9521.918191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.107 4.107 4 H 0.071 0.929 5 C -0.141 4.141 6 C 0.117 3.883 7 N -0.589 5.589 8 C 0.092 3.908 9 C -0.158 4.158 10 C 0.510 3.490 11 O -0.516 6.516 12 C 0.506 3.494 13 O -0.530 6.530 14 N -0.575 5.575 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.249 3.751 18 O -0.581 6.581 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.904 3.096 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.093 3.907 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.380 0.620 48 H 0.271 0.729 49 H 0.066 0.934 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 -15.288 -6.038 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.127 4.127 4 H 0.089 0.911 5 C -0.198 4.198 6 C -0.006 4.006 7 N -0.323 5.323 8 C -0.030 4.030 9 C -0.216 4.216 10 C 0.293 3.707 11 O -0.391 6.391 12 C 0.289 3.711 13 O -0.409 6.409 14 N -0.306 5.306 15 C -0.010 4.010 16 C -0.159 4.159 17 C 0.208 3.792 18 O -0.389 6.389 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.132 4.132 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.028 4.028 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.230 0.770 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.425 -15.674 -5.776 19.180 hybrid contribution 0.165 1.343 -0.366 1.402 sum -9.260 -14.331 -6.142 18.134 Atomic orbital electron populations 1.21800 0.95739 1.01405 1.02030 1.21493 0.96087 0.95800 1.02024 1.21579 0.95285 0.96538 0.99300 0.91103 1.21836 1.00429 1.00781 0.96758 1.21632 0.93745 0.82062 1.03134 1.47833 1.64067 1.13568 1.06794 1.22128 0.97329 1.01606 0.81889 1.22058 0.96927 1.00733 1.01909 1.20357 0.78089 0.87878 0.84345 1.90712 1.51074 1.70961 1.26365 1.19617 0.80587 0.86600 0.84320 1.90614 1.52374 1.72785 1.25171 1.48735 1.62776 1.13519 1.05611 1.22165 1.00765 0.97604 0.80507 1.22706 0.99953 0.95343 0.97946 1.19624 0.79943 0.91480 0.88115 1.86137 1.22326 1.64168 1.66303 1.21424 1.36303 0.90623 1.09173 0.91473 1.25081 0.93936 0.99882 0.94323 1.69702 1.35214 1.34381 1.13916 0.86450 0.78427 0.83376 0.78585 1.19975 1.21093 1.20016 1.23453 0.99825 0.76253 1.03294 0.92366 0.92858 0.92901 0.92036 0.91720 0.92071 0.93052 0.93013 0.90457 0.89608 0.91427 0.86628 0.91643 0.91859 0.93571 0.91028 0.92034 0.90566 0.90419 0.76984 0.91929 0.91564 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.05 16 3 C -0.11 -1.05 2.59 -90.62 -0.24 -1.29 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.14 -1.64 7.77 37.16 0.29 -1.35 16 6 C 0.12 1.27 4.97 -4.04 -0.02 1.25 16 7 N -0.59 -8.04 2.38 -174.19 -0.41 -8.45 16 8 C 0.09 1.16 5.71 -4.04 -0.02 1.14 16 9 C -0.16 -1.99 9.74 37.16 0.36 -1.63 16 10 C 0.51 8.70 6.07 -11.59 -0.07 8.63 16 11 O -0.52 -9.29 12.32 5.50 0.07 -9.22 16 12 C 0.51 10.03 7.70 -11.59 -0.09 9.94 16 13 O -0.53 -10.95 12.12 5.50 0.07 -10.89 16 14 N -0.57 -12.09 3.34 -170.83 -0.57 -12.66 16 15 C 0.11 2.18 5.52 -2.92 -0.02 2.16 16 16 C -0.12 -2.48 6.13 -24.90 -0.15 -2.63 16 17 C 0.25 5.99 0.87 -89.64 -0.08 5.91 16 18 O -0.58 -14.77 13.16 -35.23 -0.46 -15.23 16 19 C -0.54 -13.80 8.27 -34.44 -0.28 -14.08 16 20 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 21 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 22 N -0.89 -23.37 10.69 55.43 0.59 -22.78 16 23 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.09 2.18 5.38 -2.54 -0.01 2.16 16 28 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.76 8.07 -51.94 -0.42 0.34 16 34 H 0.05 0.73 6.15 -51.93 -0.32 0.41 16 35 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 36 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.09 1.03 7.37 -51.93 -0.38 0.65 16 38 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 39 H 0.12 1.74 5.37 -51.93 -0.28 1.46 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 1.42 7.47 -51.93 -0.39 1.03 16 44 H 0.06 1.10 7.83 -51.93 -0.41 0.69 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 47 H 0.38 9.84 7.56 45.56 0.34 10.18 16 48 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 49 H 0.07 1.59 8.03 -51.93 -0.42 1.18 16 50 H 0.09 2.36 7.32 -51.93 -0.38 1.98 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -27.58 386.66 -8.00 -35.58 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.87 Total: 12.61 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -0.21 Total: 10.13 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.39 Total: -43.89 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.33 Total: -35.34 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.58 -8.00 -35.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328427212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.990 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds