Wall clock time and date at job start Tue Mar 31 2020 15:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 H 1.08996 * 109.47164 * 305.00411 * 3 2 1 5 5 C 1.53007 * 109.46850 * 65.00219 * 3 2 1 6 6 C 1.53001 * 109.46981 * 184.99817 * 3 2 1 7 7 N 1.46506 * 109.47001 * 175.00256 * 6 3 2 8 8 C 1.46496 * 119.99552 * 270.00216 * 7 6 3 9 9 C 1.53005 * 109.47123 * 263.16372 * 8 7 6 10 10 C 1.34773 * 120.00139 * 90.00038 * 7 6 3 11 11 O 1.21348 * 119.99819 * 4.27412 * 10 7 6 12 12 C 1.49453 * 120.00065 * 184.27330 * 10 7 6 13 13 O 1.21344 * 119.99753 * 354.24740 * 12 10 7 14 14 N 1.34773 * 119.99833 * 174.23834 * 12 10 7 15 15 C 1.47294 * 125.79506 * 0.02562 * 14 12 10 16 16 C 1.54322 * 107.30301 * 178.92100 * 15 14 12 17 17 C 1.55151 * 102.94627 * 337.81332 * 16 15 14 18 18 O 1.42903 * 111.00478 * 277.43038 * 17 16 15 19 19 C 1.50702 * 111.04152 * 153.59408 * 17 16 15 20 20 H 1.08003 * 119.99351 * 6.33333 * 19 17 16 21 21 C 1.37870 * 120.00259 * 186.33381 * 19 17 16 22 22 N 1.31517 * 120.00115 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00207 * 179.97438 * 21 19 17 24 24 H 1.48510 * 109.46750 * 59.99993 * 23 21 19 25 25 H 1.48501 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47090 * 300.00437 * 23 21 19 27 27 C 1.47427 * 125.64621 * 179.97438 * 14 12 10 28 28 H 1.08997 * 109.47073 * 299.99813 * 1 2 3 29 29 H 1.08995 * 109.47140 * 59.99842 * 1 2 3 30 30 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47073 * 240.00187 * 2 1 3 32 32 H 1.09003 * 109.46811 * 120.00170 * 2 1 3 33 33 H 1.08989 * 109.47377 * 59.99864 * 5 3 2 34 34 H 1.09002 * 109.46902 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46748 * 299.99498 * 5 3 2 36 36 H 1.08998 * 109.47123 * 54.99925 * 6 3 2 37 37 H 1.08999 * 109.47375 * 294.99827 * 6 3 2 38 38 H 1.08999 * 109.47488 * 23.16461 * 8 7 6 39 39 H 1.09006 * 109.46728 * 143.16990 * 8 7 6 40 40 H 1.08995 * 109.46945 * 180.02562 * 9 8 7 41 41 H 1.08999 * 109.47011 * 300.00381 * 9 8 7 42 42 H 1.08998 * 109.46954 * 60.00306 * 9 8 7 43 43 H 1.08996 * 109.85925 * 59.49629 * 15 14 12 44 44 H 1.08993 * 109.99722 * 298.42400 * 15 14 12 45 45 H 1.09007 * 110.71824 * 219.44906 * 16 15 14 46 46 H 1.09003 * 110.72563 * 96.17795 * 16 15 14 47 47 H 0.96704 * 113.99815 * 173.64806 * 18 17 16 48 48 H 0.97000 * 120.00062 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.36401 * 85.26881 * 27 14 12 50 50 H 1.08995 * 110.36920 * 323.05231 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5648 1.4442 -0.1257 7 7 4.0433 2.8238 -0.2457 8 6 4.1785 3.4396 -1.5680 9 6 5.6298 3.3240 -2.0385 10 6 4.3590 3.5262 0.8603 11 8 4.3215 2.9923 1.9494 12 6 4.7555 4.9626 0.7455 13 8 4.8945 5.4680 -0.3488 14 7 4.9584 5.6965 1.8575 15 6 4.8265 5.2153 3.2434 16 6 5.1807 6.3941 4.1742 17 6 6.0395 7.3105 3.2633 18 8 7.3967 6.8651 3.2224 19 6 5.9589 8.7472 3.7110 20 1 5.4407 8.9999 4.6243 21 6 6.5465 9.7390 2.9547 22 7 7.1770 9.4313 1.8423 23 14 6.4459 11.5199 3.5092 24 1 7.0842 11.6599 4.8428 25 1 7.1523 12.3841 2.5297 26 1 5.0218 11.9315 3.5965 27 6 5.3510 7.1172 1.8895 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5875 2.1492 34 1 1.9982 3.1543 1.3073 35 1 0.5489 2.1252 1.3969 36 1 3.8571 0.8799 -1.0112 37 1 4.0030 0.9835 0.7597 38 1 3.5255 2.9285 -2.2754 39 1 3.8983 4.4914 -1.5093 40 1 5.7305 3.7826 -3.0221 41 1 6.2829 3.8351 -1.3311 42 1 5.9100 2.2723 -2.0972 43 1 5.5147 4.3877 3.4150 44 1 3.8028 4.8907 3.4294 45 1 5.7604 6.0488 5.0303 46 1 4.2789 6.9117 4.5014 47 1 7.9498 7.3463 2.5918 48 1 7.5907 10.1290 1.3104 49 1 4.4709 7.7558 1.8135 50 1 6.0488 7.3362 1.0813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328427212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:32 Heat of formation + Delta-G solvation = -135.705246 kcal Electronic energy + Delta-G solvation = -29936.766630 eV Core-core repulsion = 25963.457369 eV Total energy + Delta-G solvation = -3973.309261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03780 -40.25057 -38.93968 -38.02694 -36.52523 -35.74893 -34.24852 -31.98850 -31.90280 -30.34206 -29.70459 -28.44283 -27.36744 -25.58305 -24.53122 -24.14656 -22.53571 -21.50891 -20.84096 -20.06419 -19.14096 -18.28294 -18.01698 -17.44130 -17.12170 -16.90361 -16.30232 -16.28098 -15.88105 -15.59600 -15.19006 -14.94582 -14.67525 -14.62442 -14.49486 -14.24041 -14.03184 -13.88612 -13.52961 -13.34649 -13.33218 -13.02098 -12.88700 -12.82242 -12.80824 -12.58243 -12.40509 -12.36291 -12.28122 -12.17559 -12.11916 -11.99701 -11.70115 -11.54969 -11.40983 -11.20245 -10.69260 -10.43917 -10.21696 -9.83435 -9.52916 -8.25379 -6.42432 0.40359 1.29904 1.44643 1.45758 1.53295 2.14871 2.35047 2.43396 3.00288 3.16470 3.76629 3.84077 3.90493 3.97848 4.04536 4.14430 4.15485 4.30836 4.35701 4.41113 4.54916 4.58386 4.64896 4.65607 4.71229 4.74308 4.76291 4.82344 4.84170 4.95740 5.03212 5.06050 5.07575 5.14673 5.19426 5.20916 5.24336 5.31900 5.34923 5.42409 5.47660 5.50632 5.53895 5.73630 6.00031 6.05515 6.35528 6.61620 6.68968 6.98500 7.26020 7.34186 8.80017 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.003120 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.493773 B = 8970.802583 C = 9521.918191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.101 4.101 4 H 0.076 0.924 5 C -0.138 4.138 6 C 0.113 3.887 7 N -0.576 5.576 8 C 0.091 3.909 9 C -0.153 4.153 10 C 0.512 3.488 11 O -0.529 6.529 12 C 0.497 3.503 13 O -0.543 6.543 14 N -0.586 5.586 15 C 0.122 3.878 16 C -0.115 4.115 17 C 0.234 3.766 18 O -0.588 6.588 19 C -0.556 4.556 20 H 0.069 0.931 21 C 0.029 3.971 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.109 3.891 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.374 0.626 48 H 0.270 0.730 49 H 0.053 0.947 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 -16.978 -6.745 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.121 4.121 4 H 0.095 0.905 5 C -0.195 4.195 6 C -0.008 4.008 7 N -0.309 5.309 8 C -0.030 4.030 9 C -0.211 4.211 10 C 0.295 3.705 11 O -0.406 6.406 12 C 0.281 3.719 13 O -0.423 6.423 14 N -0.318 5.318 15 C 0.000 4.000 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.396 6.396 19 C -0.594 4.594 20 H 0.087 0.913 21 C -0.173 4.173 22 N -0.553 5.553 23 Si 0.790 3.210 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.013 4.013 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.223 0.777 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.821 -17.405 -6.502 21.501 hybrid contribution 0.577 1.824 -0.230 1.927 sum -10.244 -15.581 -6.732 19.825 Atomic orbital electron populations 1.21801 0.95351 1.02051 1.01795 1.21459 0.96347 0.94189 1.02846 1.21548 0.94388 0.97896 0.98227 0.90517 1.21796 1.00998 0.99032 0.97664 1.21922 0.94393 0.80152 1.04305 1.47928 1.62389 1.14401 1.06132 1.22171 0.98173 1.00704 0.81990 1.22009 0.95986 1.01671 1.01445 1.19809 0.78831 0.86603 0.85292 1.90701 1.52272 1.70703 1.26970 1.20330 0.79844 0.88020 0.83722 1.90615 1.52461 1.73607 1.25613 1.48771 1.63593 1.12687 1.06751 1.22125 1.01656 0.96812 0.79392 1.22713 0.99838 0.95009 0.97736 1.19848 0.79615 0.91998 0.89193 1.86129 1.23146 1.64194 1.66096 1.21717 1.36622 0.91701 1.09410 0.91290 1.25806 0.93617 1.03512 0.94334 1.69817 1.35580 1.35262 1.14600 0.85502 0.78513 0.78922 0.78058 1.19670 1.21010 1.19420 1.22984 0.98382 0.77908 1.02021 0.93180 0.92536 0.91861 0.90199 0.91928 0.93158 0.95909 0.91926 0.87100 0.90636 0.87306 0.89302 0.90332 0.95726 0.91459 0.91471 0.90213 0.89798 0.89007 0.77748 0.92034 0.92829 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 71.98 0.70 -1.12 16 2 C -0.11 -1.37 5.40 30.59 0.17 -1.21 16 3 C -0.10 -1.72 2.59 -10.79 -0.03 -1.74 16 4 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.14 -3.06 7.77 71.98 0.56 -2.50 16 6 C 0.11 2.15 4.97 86.38 0.43 2.58 16 7 N -0.58 -14.87 2.38 -823.38 -1.96 -16.83 16 8 C 0.09 2.13 5.71 86.38 0.49 2.62 16 9 C -0.15 -3.64 9.74 71.98 0.70 -2.94 16 10 C 0.51 17.42 6.07 87.27 0.53 17.95 16 11 O -0.53 -18.95 12.32 -3.24 -0.04 -18.99 16 12 C 0.50 20.20 7.70 87.27 0.67 20.87 16 13 O -0.54 -23.25 12.12 -3.23 -0.04 -23.29 16 14 N -0.59 -25.29 3.34 -812.76 -2.71 -28.00 16 15 C 0.12 4.74 5.52 86.68 0.48 5.22 16 16 C -0.12 -4.69 6.13 31.78 0.19 -4.49 16 17 C 0.23 11.49 0.87 -10.16 -0.01 11.48 16 18 O -0.59 -30.75 13.16 -148.98 -1.96 -32.71 16 19 C -0.56 -28.92 8.27 25.60 0.21 -28.71 16 20 H 0.07 3.47 7.79 -2.91 -0.02 3.45 16 21 C 0.03 1.48 5.29 84.65 0.45 1.93 16 22 N -0.91 -49.04 10.69 21.44 0.23 -48.81 16 23 Si 0.96 41.38 29.54 68.60 2.03 43.41 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 C 0.11 5.34 5.38 86.84 0.47 5.81 16 28 H 0.05 0.67 6.56 -2.39 -0.02 0.66 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.02 0.62 6.15 -2.39 -0.01 0.61 16 35 H 0.06 1.22 6.56 -2.39 -0.02 1.20 16 36 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 37 H 0.08 1.65 7.37 -2.39 -0.02 1.64 16 38 H 0.11 1.70 8.02 -2.39 -0.02 1.68 16 39 H 0.09 2.64 5.37 -2.44 -0.01 2.62 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.02 0.76 7.06 -2.39 -0.02 0.75 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 2.67 7.47 -2.39 -0.02 2.65 16 44 H 0.08 2.80 7.83 -2.39 -0.02 2.78 16 45 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 46 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 47 H 0.37 20.17 7.56 -74.05 -0.56 19.61 16 48 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 49 H 0.05 2.69 8.03 -2.38 -0.02 2.67 16 50 H 0.06 3.22 7.32 -2.39 -0.02 3.20 16 Total: -1.00 -61.21 386.66 1.92 -59.29 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 0.37 Total: 40.18 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.01 Total: 25.75 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -4.44 Total: -93.64 kcal Atomic # 8 Polarization: -72.95 SS G_CDS: -2.04 Total: -74.99 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -61.21 1.92 -59.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328427212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.416 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds