Wall clock time and date at job start Tue Mar 31 2020 16:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 N 1.46502 * 109.47267 * 179.97438 * 3 2 1 5 5 C 1.46507 * 119.99743 * 259.84063 * 4 3 2 6 6 C 1.52992 * 109.46751 * 269.99270 * 5 4 3 7 7 C 1.53001 * 109.47093 * 185.00274 * 6 5 4 8 8 C 1.53003 * 109.47763 * 305.00339 * 6 5 4 9 9 O 1.42906 * 109.47109 * 65.00332 * 6 5 4 10 10 C 1.34775 * 120.00088 * 79.83272 * 4 3 2 11 11 O 1.21347 * 120.00288 * 180.91822 * 10 4 3 12 12 C 1.49453 * 119.99840 * 0.92002 * 10 4 3 13 13 O 1.21349 * 120.00161 * 4.30548 * 12 10 4 14 14 N 1.34776 * 119.99782 * 184.30229 * 12 10 4 15 15 C 1.46502 * 120.00089 * 185.04157 * 14 12 10 16 16 C 1.52994 * 109.47246 * 184.83368 * 15 14 12 17 17 C 1.50703 * 115.55144 * 305.22822 * 16 15 14 18 18 H 1.08000 * 120.00021 * 95.30689 * 17 16 15 19 19 C 1.37877 * 119.99899 * 275.03331 * 17 16 15 20 20 N 1.31518 * 120.00162 * 355.38576 * 19 17 16 21 21 Si 1.86791 * 120.00062 * 175.38840 * 19 17 16 22 22 H 1.48504 * 109.47162 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47246 * 119.99761 * 21 19 17 24 24 H 1.48506 * 109.47243 * 239.99928 * 21 19 17 25 25 C 1.52999 * 117.49932 * 90.89934 * 16 15 14 26 26 C 1.53004 * 117.49885 * 159.55779 * 16 15 14 27 27 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47217 * 299.99763 * 1 2 3 29 29 H 1.08997 * 109.46962 * 60.00261 * 1 2 3 30 30 H 1.08999 * 109.47384 * 240.00663 * 2 1 3 31 31 H 1.08997 * 109.46962 * 119.99739 * 2 1 3 32 32 H 1.09001 * 109.47299 * 59.99931 * 3 2 1 33 33 H 1.09000 * 109.47506 * 300.00006 * 3 2 1 34 34 H 1.08996 * 109.47066 * 29.99941 * 5 4 3 35 35 H 1.09005 * 109.46347 * 149.99867 * 5 4 3 36 36 H 1.08995 * 109.47108 * 59.99992 * 7 6 5 37 37 H 1.08995 * 109.47270 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47285 * 300.00155 * 7 6 5 39 39 H 1.09000 * 109.47065 * 59.99722 * 8 6 5 40 40 H 1.08995 * 109.47277 * 179.97438 * 8 6 5 41 41 H 1.09002 * 109.46666 * 300.00563 * 8 6 5 42 42 H 0.96701 * 113.99763 * 59.99751 * 9 6 5 43 43 H 0.97007 * 120.00170 * 5.04684 * 14 12 10 44 44 H 1.09002 * 109.46614 * 64.83339 * 15 14 12 45 45 H 1.09000 * 109.46971 * 304.83739 * 15 14 12 46 46 H 0.96999 * 120.00313 * 185.00538 * 20 19 17 47 47 H 1.09000 * 117.50122 * 215.00571 * 25 16 15 48 48 H 1.09000 * 117.50001 * 0.02562 * 25 16 15 49 49 H 1.09000 * 117.49499 * 359.97438 * 26 16 15 50 50 H 1.08999 * 117.50059 * 144.97098 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 6 4.2369 1.6667 1.2498 6 6 4.4918 3.1645 1.4298 7 6 5.3625 3.3885 2.6678 8 6 5.2106 3.7117 0.1950 9 8 3.2452 3.8434 1.5951 10 6 4.1794 1.2365 -1.1479 11 8 5.3927 1.2200 -1.1445 12 6 3.4328 1.0283 -2.4258 13 8 2.2231 1.1223 -2.4440 14 7 4.1031 0.7362 -3.5579 15 6 3.3844 0.6409 -4.8309 16 6 4.3480 0.1835 -5.9277 17 6 5.5914 1.0193 -6.0906 18 1 6.5070 0.7270 -5.5980 19 6 5.5615 2.1541 -6.8731 20 7 4.4754 2.4580 -7.5497 21 14 7.0637 3.2600 -6.9724 22 1 8.1466 2.7013 -6.1236 23 1 7.5284 3.3384 -8.3806 24 1 6.7100 4.6197 -6.4913 25 6 4.4702 -1.3209 -6.1783 26 6 3.7408 -0.4329 -7.1896 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.6475 1.2950 2.0879 35 1 5.1894 1.1380 1.2126 36 1 6.3133 2.8707 2.5417 37 1 5.5438 4.4555 2.7963 38 1 4.8505 2.9987 3.5476 39 1 4.5903 3.5522 -0.6870 40 1 5.3917 4.7788 0.3231 41 1 6.1614 3.1939 0.0689 42 1 2.7343 3.5467 2.3608 43 1 5.0615 0.5888 -3.5299 44 1 2.9750 1.6172 -5.0909 45 1 2.5724 -0.0801 -4.7367 46 1 4.4777 3.2151 -8.1562 47 1 5.4499 -1.7061 -6.4610 48 1 3.8638 -1.9847 -5.5621 49 1 2.6548 -0.5129 -7.2381 50 1 4.2404 -0.2336 -8.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330226708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:31 Heat of formation + Delta-G solvation = -97.991094 kcal Electronic energy + Delta-G solvation = -29806.784842 eV Core-core repulsion = 25835.110990 eV Total energy + Delta-G solvation = -3971.673852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74299 -38.80138 -37.62707 -36.83215 -35.95400 -33.31519 -33.22378 -31.99269 -31.97887 -27.77985 -27.46899 -26.81321 -25.93011 -25.27168 -22.72450 -21.60750 -21.14299 -20.48694 -19.72758 -19.09839 -17.46354 -17.18024 -16.32239 -16.14022 -15.90223 -15.27296 -15.22234 -14.88918 -14.66157 -14.50809 -14.42141 -13.84913 -13.55265 -13.27641 -13.08095 -12.75735 -12.69386 -12.63194 -12.26298 -12.12657 -12.03066 -11.92864 -11.73960 -11.69598 -11.60175 -11.32448 -11.01271 -10.99157 -10.95696 -10.80215 -10.61510 -10.50522 -10.40040 -10.23440 -9.57693 -9.07323 -8.94362 -8.60005 -8.52364 -8.37487 -8.10738 -6.09395 -4.19228 1.83805 2.63684 3.26070 3.35625 3.39312 3.62326 3.86821 4.06867 4.35886 4.55975 4.65380 4.78169 4.89391 5.02252 5.08641 5.16519 5.19008 5.33810 5.36895 5.42138 5.44037 5.48781 5.67043 5.74401 5.78669 5.89972 5.92807 5.95810 5.97099 6.10904 6.20538 6.27080 6.31905 6.32987 6.42159 6.48329 6.53039 6.68821 6.78587 7.07157 7.09126 7.18891 7.31484 7.49168 7.49865 7.80630 7.84768 8.22204 8.31073 8.60135 8.83413 9.49045 10.97628 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004014 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.502694 B = 6973.646740 C = 8517.954927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.581 5.581 5 C 0.089 3.911 6 C 0.112 3.888 7 C -0.175 4.175 8 C -0.135 4.135 9 O -0.553 6.553 10 C 0.507 3.493 11 O -0.520 6.520 12 C 0.493 3.507 13 O -0.531 6.531 14 N -0.664 5.664 15 C 0.161 3.839 16 C 0.022 3.978 17 C -0.501 4.501 18 H 0.062 0.938 19 C 0.075 3.925 20 N -0.874 5.874 21 Si 0.889 3.111 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.140 4.140 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.369 0.631 43 H 0.414 0.586 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.261 0.739 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -1.947 19.243 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.018 4.018 4 N -0.314 5.314 5 C -0.035 4.035 6 C 0.070 3.930 7 C -0.233 4.233 8 C -0.192 4.192 9 O -0.358 6.358 10 C 0.290 3.710 11 O -0.395 6.395 12 C 0.273 3.727 13 O -0.411 6.411 14 N -0.313 5.313 15 C 0.038 3.962 16 C 0.021 3.979 17 C -0.538 4.538 18 H 0.080 0.920 19 C -0.129 4.129 20 N -0.510 5.510 21 Si 0.716 3.284 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.248 4.248 26 C -0.179 4.179 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.216 0.784 43 H 0.251 0.749 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.991 -1.392 18.558 19.033 hybrid contribution 0.997 0.302 0.390 1.112 sum -2.994 -1.090 18.948 19.214 Atomic orbital electron populations 1.21609 0.95135 1.01471 1.01883 1.21859 0.96424 0.97121 1.01735 1.22160 0.77375 0.97446 1.04785 1.47667 1.07847 1.69193 1.06644 1.22272 0.98735 0.96420 0.86048 1.21705 0.84402 0.90887 0.96004 1.22424 1.00698 1.03052 0.97099 1.21770 1.00392 1.00993 0.96025 1.86664 1.32502 1.64795 1.51850 1.20473 0.87605 0.77603 0.85280 1.90732 1.13416 1.49406 1.85986 1.19903 0.87690 0.79950 0.85148 1.90618 1.13345 1.51498 1.85635 1.45889 1.13432 1.65405 1.06621 1.21119 0.93239 1.01001 0.80837 1.19029 0.96309 0.89526 0.93057 1.20397 0.94583 1.07413 1.31455 0.91957 1.24974 0.95778 0.97067 0.95085 1.69994 1.27068 1.28138 1.25832 0.86585 0.83122 0.80841 0.77819 1.19514 1.21013 1.20911 1.23059 1.00978 0.95221 1.05502 1.22462 0.96630 1.03306 0.95458 0.92962 0.93213 0.91891 0.91303 0.93096 0.91160 0.86760 0.90141 0.88783 0.91218 0.91450 0.92364 0.92139 0.92391 0.90189 0.78439 0.74877 0.91030 0.93489 0.92907 0.90289 0.91689 0.91777 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.56 5.66 -26.73 -0.15 -1.71 16 3 C 0.10 1.28 4.74 -4.04 -0.02 1.26 16 4 N -0.58 -7.75 2.16 -174.19 -0.38 -8.12 16 5 C 0.09 0.93 4.72 -4.04 -0.02 0.91 16 6 C 0.11 1.17 1.18 -90.62 -0.11 1.06 16 7 C -0.17 -1.38 8.82 37.16 0.33 -1.05 16 8 C -0.13 -1.83 7.49 37.16 0.28 -1.55 16 9 O -0.55 -5.81 12.02 -35.23 -0.42 -6.23 16 10 C 0.51 8.51 5.89 -11.58 -0.07 8.44 16 11 O -0.52 -9.47 14.32 5.50 0.08 -9.39 16 12 C 0.49 9.27 7.35 -11.58 -0.09 9.18 16 13 O -0.53 -10.22 11.78 5.50 0.06 -10.16 16 14 N -0.66 -13.43 5.40 -60.73 -0.33 -13.76 16 15 C 0.16 3.54 5.59 -4.04 -0.02 3.51 16 16 C 0.02 0.50 1.62 -155.66 -0.25 0.25 16 17 C -0.50 -12.90 8.08 -34.44 -0.28 -13.18 16 18 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 19 C 0.08 1.99 5.43 -17.82 -0.10 1.90 16 20 N -0.87 -23.99 12.65 55.43 0.70 -23.29 16 21 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.21 -4.38 9.93 -26.69 -0.26 -4.65 16 26 C -0.14 -3.17 9.18 -26.69 -0.24 -3.41 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.99 6.60 -51.93 -0.34 0.65 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 33 H 0.11 1.73 5.57 -51.93 -0.29 1.44 16 34 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.09 1.05 7.41 -51.93 -0.38 0.66 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.99 6.25 -51.93 -0.32 0.67 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.11 7.46 -51.93 -0.39 0.72 16 42 H 0.37 2.31 9.05 45.56 0.41 2.72 16 43 H 0.41 8.49 7.45 -40.82 -0.30 8.19 16 44 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 46 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 47 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 50 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -29.03 400.03 -7.79 -36.82 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -7.88 Total: 12.46 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.64 Total: -0.15 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.00 Total: -45.17 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.28 Total: -25.78 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.03 -7.79 -36.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330226708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.172 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds