Wall clock time and date at job start Tue Mar 31 2020 16:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 N 1.46502 * 109.47267 * 179.97438 * 3 2 1 5 5 C 1.46507 * 119.99743 * 259.84063 * 4 3 2 6 6 C 1.52992 * 109.46751 * 269.99270 * 5 4 3 7 7 C 1.53001 * 109.47093 * 185.00274 * 6 5 4 8 8 C 1.53003 * 109.47763 * 305.00339 * 6 5 4 9 9 O 1.42906 * 109.47109 * 65.00332 * 6 5 4 10 10 C 1.34775 * 120.00088 * 79.83272 * 4 3 2 11 11 O 1.21347 * 120.00288 * 180.91822 * 10 4 3 12 12 C 1.49453 * 119.99840 * 0.92002 * 10 4 3 13 13 O 1.21349 * 120.00161 * 4.30548 * 12 10 4 14 14 N 1.34776 * 119.99782 * 184.30229 * 12 10 4 15 15 C 1.46502 * 120.00089 * 185.04157 * 14 12 10 16 16 C 1.52994 * 109.47246 * 184.83368 * 15 14 12 17 17 C 1.50703 * 115.55144 * 305.22822 * 16 15 14 18 18 H 1.08000 * 120.00021 * 95.30689 * 17 16 15 19 19 C 1.37877 * 119.99899 * 275.03331 * 17 16 15 20 20 N 1.31518 * 120.00162 * 355.38576 * 19 17 16 21 21 Si 1.86791 * 120.00062 * 175.38840 * 19 17 16 22 22 H 1.48504 * 109.47162 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47246 * 119.99761 * 21 19 17 24 24 H 1.48506 * 109.47243 * 239.99928 * 21 19 17 25 25 C 1.52999 * 117.49932 * 90.89934 * 16 15 14 26 26 C 1.53004 * 117.49885 * 159.55779 * 16 15 14 27 27 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47217 * 299.99763 * 1 2 3 29 29 H 1.08997 * 109.46962 * 60.00261 * 1 2 3 30 30 H 1.08999 * 109.47384 * 240.00663 * 2 1 3 31 31 H 1.08997 * 109.46962 * 119.99739 * 2 1 3 32 32 H 1.09001 * 109.47299 * 59.99931 * 3 2 1 33 33 H 1.09000 * 109.47506 * 300.00006 * 3 2 1 34 34 H 1.08996 * 109.47066 * 29.99941 * 5 4 3 35 35 H 1.09005 * 109.46347 * 149.99867 * 5 4 3 36 36 H 1.08995 * 109.47108 * 59.99992 * 7 6 5 37 37 H 1.08995 * 109.47270 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47285 * 300.00155 * 7 6 5 39 39 H 1.09000 * 109.47065 * 59.99722 * 8 6 5 40 40 H 1.08995 * 109.47277 * 179.97438 * 8 6 5 41 41 H 1.09002 * 109.46666 * 300.00563 * 8 6 5 42 42 H 0.96701 * 113.99763 * 59.99751 * 9 6 5 43 43 H 0.97007 * 120.00170 * 5.04684 * 14 12 10 44 44 H 1.09002 * 109.46614 * 64.83339 * 15 14 12 45 45 H 1.09000 * 109.46971 * 304.83739 * 15 14 12 46 46 H 0.96999 * 120.00313 * 185.00538 * 20 19 17 47 47 H 1.09000 * 117.50122 * 215.00571 * 25 16 15 48 48 H 1.09000 * 117.50001 * 0.02562 * 25 16 15 49 49 H 1.09000 * 117.49499 * 359.97438 * 26 16 15 50 50 H 1.08999 * 117.50059 * 144.97098 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 6 4.2369 1.6667 1.2498 6 6 4.4918 3.1645 1.4298 7 6 5.3625 3.3885 2.6678 8 6 5.2106 3.7117 0.1950 9 8 3.2452 3.8434 1.5951 10 6 4.1794 1.2365 -1.1479 11 8 5.3927 1.2200 -1.1445 12 6 3.4328 1.0283 -2.4258 13 8 2.2231 1.1223 -2.4440 14 7 4.1031 0.7362 -3.5579 15 6 3.3844 0.6409 -4.8309 16 6 4.3480 0.1835 -5.9277 17 6 5.5914 1.0193 -6.0906 18 1 6.5070 0.7270 -5.5980 19 6 5.5615 2.1541 -6.8731 20 7 4.4754 2.4580 -7.5497 21 14 7.0637 3.2600 -6.9724 22 1 8.1466 2.7013 -6.1236 23 1 7.5284 3.3384 -8.3806 24 1 6.7100 4.6197 -6.4913 25 6 4.4702 -1.3209 -6.1783 26 6 3.7408 -0.4329 -7.1896 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.6475 1.2950 2.0879 35 1 5.1894 1.1380 1.2126 36 1 6.3133 2.8707 2.5417 37 1 5.5438 4.4555 2.7963 38 1 4.8505 2.9987 3.5476 39 1 4.5903 3.5522 -0.6870 40 1 5.3917 4.7788 0.3231 41 1 6.1614 3.1939 0.0689 42 1 2.7343 3.5467 2.3608 43 1 5.0615 0.5888 -3.5299 44 1 2.9750 1.6172 -5.0909 45 1 2.5724 -0.0801 -4.7367 46 1 4.4777 3.2151 -8.1562 47 1 5.4499 -1.7061 -6.4610 48 1 3.8638 -1.9847 -5.5621 49 1 2.6548 -0.5129 -7.2381 50 1 4.2404 -0.2336 -8.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330226708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:30 Heat of formation + Delta-G solvation = -117.446976 kcal Electronic energy + Delta-G solvation = -29807.628513 eV Core-core repulsion = 25835.110990 eV Total energy + Delta-G solvation = -3972.517523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01748 -40.07630 -38.80577 -38.50354 -37.10540 -34.89414 -34.14690 -33.98719 -32.89104 -29.08303 -28.38646 -28.04771 -27.44534 -26.84379 -24.00372 -22.91913 -22.57741 -21.53570 -21.34614 -20.56067 -18.85442 -18.34232 -17.93506 -17.36569 -17.14031 -16.70777 -16.56648 -16.22044 -16.06366 -15.86393 -15.41528 -15.30807 -14.94773 -14.59794 -14.43231 -14.23951 -13.67828 -13.52974 -13.51152 -13.46997 -13.24922 -13.10790 -12.94797 -12.88889 -12.86912 -12.64218 -12.61642 -12.37078 -12.24724 -12.07638 -12.02015 -11.77422 -11.57948 -11.40799 -11.27238 -10.98071 -10.49307 -10.35009 -10.10294 -9.89799 -9.61592 -8.12648 -6.25984 0.43554 1.37051 1.39426 1.42407 1.51147 2.20816 2.39508 2.55952 3.15111 3.31976 3.37092 3.57405 3.74551 3.83159 3.99283 4.09511 4.18985 4.20288 4.38641 4.49816 4.50903 4.56443 4.62443 4.63548 4.67284 4.71645 4.81562 4.85746 4.92163 4.93306 4.99383 5.01228 5.03581 5.16971 5.21638 5.24547 5.26892 5.30578 5.36984 5.47920 5.53602 5.57691 5.68606 5.75626 5.99381 6.34137 6.40993 6.78727 6.82129 6.94526 7.07049 7.44004 8.94146 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004014 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.502694 B = 6973.646740 C = 8517.954927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.104 3.896 4 N -0.568 5.568 5 C 0.084 3.916 6 C 0.118 3.882 7 C -0.167 4.167 8 C -0.135 4.135 9 O -0.569 6.569 10 C 0.506 3.494 11 O -0.541 6.541 12 C 0.489 3.511 13 O -0.537 6.537 14 N -0.672 5.672 15 C 0.178 3.822 16 C -0.003 4.003 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.031 3.969 20 N -0.902 5.902 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.289 1.289 25 C -0.182 4.182 26 C -0.145 4.145 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.390 0.610 43 H 0.412 0.588 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.260 0.740 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -2.623 22.460 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.017 4.017 4 N -0.299 5.299 5 C -0.038 4.038 6 C 0.076 3.924 7 C -0.225 4.225 8 C -0.193 4.193 9 O -0.378 6.378 10 C 0.289 3.711 11 O -0.419 6.419 12 C 0.270 3.730 13 O -0.417 6.417 14 N -0.322 5.322 15 C 0.054 3.946 16 C -0.003 4.003 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.170 4.170 20 N -0.540 5.540 21 Si 0.768 3.232 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.215 1.215 25 C -0.219 4.219 26 C -0.184 4.184 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.240 0.760 43 H 0.249 0.751 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.272 -2.074 21.825 22.336 hybrid contribution 1.001 0.528 -0.543 1.256 sum -3.271 -1.546 21.283 21.588 Atomic orbital electron populations 1.21583 0.94000 1.02049 1.02088 1.21801 0.97369 0.96262 1.01178 1.22187 0.76586 0.98039 1.04924 1.47756 1.08439 1.67128 1.06552 1.22598 0.99082 0.96593 0.85511 1.21560 0.84842 0.90363 0.95619 1.22346 1.00454 1.03077 0.96606 1.21745 0.99858 1.01191 0.96501 1.86626 1.32671 1.65087 1.53394 1.20060 0.87240 0.78358 0.85476 1.90718 1.13942 1.51025 1.86192 1.20410 0.87794 0.79084 0.85746 1.90627 1.13749 1.51238 1.86061 1.45824 1.13222 1.66508 1.06597 1.20739 0.93219 0.99149 0.81459 1.19080 0.96103 0.91219 0.93939 1.20638 0.95299 1.07690 1.30669 0.92464 1.25592 0.97924 0.98283 0.95207 1.70088 1.28519 1.28675 1.26688 0.85753 0.80644 0.78914 0.77870 1.19053 1.20499 1.21489 1.23047 1.01112 0.93857 1.03886 1.22376 0.97223 1.04325 0.94446 0.92240 0.90736 0.93930 0.94550 0.90870 0.87646 0.89959 0.85834 0.89255 0.91139 0.91814 0.89405 0.95634 0.92394 0.91049 0.75961 0.75132 0.94542 0.92577 0.93108 0.90003 0.89233 0.90685 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.13 -2.74 5.66 30.60 0.17 -2.57 16 3 C 0.10 2.37 4.74 86.38 0.41 2.78 16 4 N -0.57 -14.33 2.16 -823.37 -1.78 -16.11 16 5 C 0.08 1.51 4.72 86.38 0.41 1.91 16 6 C 0.12 2.19 1.18 -10.79 -0.01 2.18 16 7 C -0.17 -2.09 8.82 71.98 0.63 -1.46 16 8 C -0.14 -3.68 7.49 71.98 0.54 -3.14 16 9 O -0.57 -10.28 12.02 -148.98 -1.79 -12.07 16 10 C 0.51 17.09 5.89 87.27 0.51 17.60 16 11 O -0.54 -19.98 14.32 -3.24 -0.05 -20.02 16 12 C 0.49 18.86 7.35 87.27 0.64 19.50 16 13 O -0.54 -21.25 11.78 -3.24 -0.04 -21.29 16 14 N -0.67 -27.99 5.40 -464.41 -2.51 -30.50 16 15 C 0.18 8.04 5.59 86.38 0.48 8.53 16 16 C 0.00 -0.13 1.62 -52.93 -0.09 -0.21 16 17 C -0.51 -26.49 8.08 25.60 0.21 -26.28 16 18 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 19 C 0.03 1.68 5.43 84.65 0.46 2.14 16 20 N -0.90 -50.87 12.65 21.45 0.27 -50.60 16 21 Si 0.94 43.55 29.54 68.60 2.03 45.57 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 C -0.18 -7.42 9.93 30.62 0.30 -7.11 16 26 C -0.15 -6.61 9.18 30.62 0.28 -6.33 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.02 6.60 -2.39 -0.02 1.01 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.68 7.36 -2.39 -0.02 1.66 16 33 H 0.08 2.48 5.57 -2.39 -0.01 2.47 16 34 H 0.12 1.21 8.07 -2.39 -0.02 1.19 16 35 H 0.09 1.77 7.41 -2.38 -0.02 1.75 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.02 0.84 6.25 -2.39 -0.01 0.83 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 2.01 7.46 -2.39 -0.02 1.99 16 42 H 0.39 3.13 9.05 -74.06 -0.67 2.46 16 43 H 0.41 17.42 7.45 -92.70 -0.69 16.73 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 46 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 47 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 48 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 49 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 50 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -65.28 400.03 1.38 -63.89 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: -0.42 Total: 35.45 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.67 Total: 5.67 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.02 Total: -97.21 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.88 Total: -53.38 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.28 1.38 -63.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330226708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.554 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds