Wall clock time and date at job start Tue Mar 31 2020 16:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47318 * 2 1 4 4 N 1.46497 * 109.46874 * 120.00323 * 2 1 3 5 5 C 1.46511 * 120.00059 * 304.23703 * 4 2 1 6 6 C 1.50700 * 109.47256 * 270.00331 * 5 4 2 7 7 H 1.08003 * 119.99818 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99944 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00280 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99964 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46793 * 90.00258 * 10 8 6 12 12 H 1.48498 * 109.47001 * 210.00132 * 10 8 6 13 13 H 1.48496 * 109.47206 * 330.00210 * 10 8 6 14 14 C 1.34773 * 120.00399 * 124.24240 * 4 2 1 15 15 O 1.21283 * 120.00460 * 185.39632 * 14 4 2 16 16 C 1.50702 * 119.99791 * 5.39423 * 14 4 2 17 17 C 1.53006 * 109.47361 * 174.87136 * 16 14 4 18 18 C 1.50689 * 109.47178 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00398 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.46924 * 120.62853 * 180.02562 * 20 18 17 22 22 C 1.53191 * 108.89052 * 233.55432 * 21 20 18 23 23 C 1.53074 * 109.29917 * 305.58118 * 22 21 20 24 24 O 1.42897 * 109.44342 * 181.23253 * 23 22 21 25 25 C 1.53042 * 109.65454 * 61.15086 * 23 22 21 26 26 C 1.46917 * 120.62845 * 0.02562 * 20 18 17 27 27 H 1.09002 * 109.47272 * 295.64783 * 1 2 3 28 28 H 1.09004 * 109.47258 * 55.64207 * 1 2 3 29 29 H 1.08993 * 109.47552 * 175.64053 * 1 2 3 30 30 H 1.08994 * 109.46703 * 240.00042 * 2 1 3 31 31 H 1.09003 * 109.46921 * 184.58185 * 3 2 1 32 32 H 1.09000 * 109.47181 * 304.58829 * 3 2 1 33 33 H 1.08999 * 109.47032 * 64.58409 * 3 2 1 34 34 H 1.08997 * 109.46590 * 30.00419 * 5 4 2 35 35 H 1.08999 * 109.47089 * 150.00350 * 5 4 2 36 36 H 0.97001 * 120.00524 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47065 * 54.87044 * 16 14 4 38 38 H 1.09007 * 109.46788 * 294.86929 * 16 14 4 39 39 H 1.08997 * 109.46839 * 59.99489 * 17 16 14 40 40 H 1.09001 * 109.46947 * 300.00110 * 17 16 14 41 41 H 1.08994 * 109.59377 * 353.41629 * 21 20 18 42 42 H 1.09005 * 109.58288 * 113.70395 * 21 20 18 43 43 H 1.08999 * 109.49545 * 65.39237 * 22 21 20 44 44 H 1.09006 * 109.49986 * 185.48868 * 22 21 20 45 45 H 1.09003 * 109.34785 * 301.13144 * 23 22 21 46 46 H 0.96702 * 113.99788 * 59.79523 * 24 23 22 47 47 H 1.09004 * 109.49659 * 178.74955 * 25 23 22 48 48 H 1.09000 * 109.52205 * 58.67058 * 25 23 22 49 49 H 1.08997 * 109.58943 * 246.15726 * 26 20 18 50 50 H 1.09005 * 109.59124 * 6.44342 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 1.5894 -0.2466 2.5248 6 6 2.5497 0.7937 3.0411 7 1 3.3947 1.0944 2.4394 8 6 2.3489 1.3623 4.2809 9 7 1.3197 0.9966 5.0132 10 14 3.5398 2.6514 4.9211 11 1 3.0805 4.0004 4.5033 12 1 3.5925 2.5836 6.4036 13 1 4.8927 2.3949 4.3654 14 6 2.8620 -1.7345 1.0744 15 8 3.1892 -2.3676 2.0558 16 6 3.3991 -2.1151 -0.2813 17 6 4.4243 -3.2402 -0.1263 18 6 4.9608 -3.6212 -1.4820 19 8 4.5622 -3.0495 -2.4745 20 7 5.8837 -4.5973 -1.5915 21 6 6.4167 -4.9794 -2.9063 22 6 6.2474 -6.4908 -3.0899 23 6 6.8952 -7.2195 -1.9098 24 8 6.7642 -8.6307 -2.0922 25 6 6.2038 -6.8074 -0.6081 26 6 6.3760 -5.2993 -0.3985 27 1 -0.3634 0.4448 0.9264 28 1 -0.3634 0.5800 -0.8484 29 1 -0.3634 -1.0246 -0.0781 30 1 1.8932 -0.5138 -0.8900 31 1 3.1270 1.4435 -0.0821 32 1 1.6111 1.9795 -0.8460 33 1 1.7453 1.9320 0.9282 34 1 0.5896 0.1825 2.4592 35 1 1.5755 -1.0979 3.2054 36 1 1.1786 1.3963 5.8857 37 1 3.8767 -1.2488 -0.7391 38 1 2.5794 -2.4550 -0.9144 39 1 3.9467 -4.1064 0.3316 40 1 5.2439 -2.9003 0.5068 41 1 5.8708 -4.4529 -3.6890 42 1 7.4742 -4.7209 -2.9611 43 1 5.1860 -6.7360 -3.1280 44 1 6.7264 -6.8005 -4.0188 45 1 7.9517 -6.9563 -1.8588 46 1 7.1799 -8.9631 -2.8995 47 1 6.6523 -7.3443 0.2278 48 1 5.1423 -7.0478 -0.6675 49 1 7.4307 -5.0692 -0.2482 50 1 5.8048 -4.9819 0.4740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362179953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:34 Heat of formation + Delta-G solvation = -134.487020 kcal Electronic energy + Delta-G solvation = -28765.274428 eV Core-core repulsion = 24792.017993 eV Total energy + Delta-G solvation = -3973.256434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51858 -39.19303 -38.29967 -36.05964 -35.95193 -33.14311 -32.66590 -31.70927 -31.37157 -30.76994 -27.78178 -26.70747 -25.79080 -24.57127 -23.52126 -22.43587 -21.31458 -20.92033 -19.13629 -18.12730 -17.72297 -17.34708 -16.45719 -16.37507 -15.98406 -15.78036 -15.09647 -15.02679 -14.85270 -14.63972 -14.19359 -13.96598 -13.72146 -13.43092 -13.36292 -13.02183 -12.85112 -12.67271 -12.34837 -12.22548 -12.03303 -11.85943 -11.85078 -11.65056 -11.61554 -11.43186 -11.13780 -11.02495 -10.91200 -10.86670 -10.78425 -10.51845 -10.30949 -10.29192 -9.98849 -9.82148 -9.51407 -8.95423 -8.85640 -8.40296 -7.59905 -6.01833 -4.05169 2.53427 2.72144 3.30414 3.37123 3.39898 3.47965 3.73287 3.94804 4.25403 4.33297 4.45367 4.53241 4.65906 4.69322 4.86566 4.96998 5.08729 5.19424 5.24022 5.27758 5.28479 5.33239 5.37464 5.38918 5.44489 5.58862 5.63273 5.68020 5.74644 5.78815 5.86136 6.02590 6.08554 6.10071 6.22824 6.26516 6.34117 6.41059 6.65781 7.01530 7.14026 7.17050 7.20612 7.51546 7.61650 7.95542 8.04149 8.28099 8.49629 8.93518 9.13020 9.58939 11.06204 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002650 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.001976 B =10565.296902 C =11296.825258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.592 5.592 5 C 0.243 3.757 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.507 3.493 15 O -0.549 6.549 16 C -0.125 4.125 17 C -0.123 4.123 18 C 0.520 3.480 19 O -0.541 6.541 20 N -0.619 5.619 21 C 0.113 3.887 22 C -0.167 4.167 23 C 0.105 3.895 24 O -0.567 6.567 25 C -0.129 4.129 26 C 0.107 3.893 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.378 0.622 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 -13.296 -16.925 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.219 4.219 4 N -0.324 5.324 5 C 0.124 3.876 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.293 3.707 15 O -0.428 6.428 16 C -0.166 4.166 17 C -0.163 4.163 18 C 0.309 3.691 19 O -0.418 6.418 20 N -0.354 5.354 21 C -0.010 4.010 22 C -0.205 4.205 23 C 0.046 3.954 24 O -0.373 6.373 25 C -0.168 4.168 26 C -0.016 4.016 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.225 0.775 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.919 -13.202 -16.173 22.702 hybrid contribution 1.003 0.722 -0.143 1.244 sum 9.922 -12.480 -16.316 22.812 Atomic orbital electron populations 1.22151 0.95506 1.01604 1.02732 1.21009 0.94208 0.94045 0.87999 1.22192 1.00804 0.95942 1.02968 1.48296 1.45248 1.30076 1.08740 1.19265 0.95345 0.95648 0.77329 1.21450 1.10832 1.21549 1.01969 0.92370 1.24927 0.95565 0.97149 0.96541 1.69929 1.28621 1.43106 1.11785 0.86556 0.81518 0.81620 0.78078 1.20704 1.21187 1.19953 1.20277 0.79551 0.80726 0.90104 1.90645 1.59307 1.52722 1.40123 1.21427 0.99288 0.99205 0.96645 1.21419 1.00529 1.00737 0.93618 1.20937 0.77799 0.78398 0.91928 1.90676 1.58705 1.52857 1.39543 1.48159 1.42336 1.37224 1.07632 1.21480 0.99260 0.94189 0.86040 1.22673 1.03049 0.95874 0.98921 1.21795 0.98140 0.80587 0.94858 1.86538 1.81250 1.22120 1.47366 1.21898 1.02453 0.95389 0.97036 1.21805 1.00703 0.90798 0.88323 0.91094 0.92250 0.92990 0.90484 0.93075 0.93206 0.89736 0.94703 0.93947 0.92810 0.88894 0.89014 0.87985 0.88038 0.88573 0.91494 0.90573 0.90501 0.92524 0.77535 0.89648 0.90466 0.90849 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.19 37.16 0.34 -2.16 16 2 C 0.13 2.24 3.12 -67.93 -0.21 2.03 16 3 C -0.16 -2.73 8.74 37.16 0.32 -2.41 16 4 N -0.59 -12.50 2.39 -167.47 -0.40 -12.90 16 5 C 0.24 6.26 4.73 -5.19 -0.02 6.23 16 6 C -0.52 -14.33 7.72 -34.44 -0.27 -14.59 16 7 H 0.06 1.61 7.59 -52.48 -0.40 1.21 16 8 C 0.06 1.69 5.46 -17.83 -0.10 1.59 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 10.39 7.66 -10.99 -0.08 10.31 16 15 O -0.55 -13.22 15.54 5.55 0.09 -13.13 16 16 C -0.12 -1.96 3.32 -27.88 -0.09 -2.05 16 17 C -0.12 -1.67 3.35 -27.89 -0.09 -1.76 16 18 C 0.52 6.81 7.70 -10.99 -0.08 6.72 16 19 O -0.54 -8.63 15.39 5.56 0.09 -8.55 16 20 N -0.62 -6.29 2.97 -172.76 -0.51 -6.81 16 21 C 0.11 0.96 6.43 -3.71 -0.02 0.94 16 22 C -0.17 -1.15 5.71 -26.59 -0.15 -1.30 16 23 C 0.11 0.73 3.43 -26.67 -0.09 0.64 16 24 O -0.57 -4.32 13.32 -35.23 -0.47 -4.79 16 25 C -0.13 -1.01 5.74 -26.59 -0.15 -1.16 16 26 C 0.11 0.86 6.34 -3.70 -0.02 0.83 16 27 H 0.07 1.24 6.34 -51.93 -0.33 0.91 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.14 5.85 -51.93 -0.30 0.84 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.69 6.60 -51.93 -0.34 1.34 16 34 H 0.04 0.91 6.13 -51.93 -0.32 0.59 16 35 H 0.04 1.24 7.35 -51.93 -0.38 0.86 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.09 1.43 7.81 -51.93 -0.41 1.03 16 38 H 0.09 1.34 7.68 -51.93 -0.40 0.94 16 39 H 0.10 1.33 7.60 -51.93 -0.39 0.94 16 40 H 0.10 1.36 7.94 -51.93 -0.41 0.95 16 41 H 0.10 0.96 7.00 -51.93 -0.36 0.60 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 1.27 9.08 45.56 0.41 1.69 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.84 5.93 -51.93 -0.31 0.53 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -34.80 393.16 -8.03 -42.83 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.73 Total: 2.52 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.73 Total: 3.87 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.18 Total: -45.34 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.30 Total: -26.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.80 -8.03 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362179953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.653 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds