Wall clock time and date at job start Tue Mar 31 2020 16:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47318 * 2 1 4 4 N 1.46497 * 109.46874 * 120.00323 * 2 1 3 5 5 C 1.46511 * 120.00059 * 304.23703 * 4 2 1 6 6 C 1.50700 * 109.47256 * 270.00331 * 5 4 2 7 7 H 1.08003 * 119.99818 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99944 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00280 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99964 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46793 * 90.00258 * 10 8 6 12 12 H 1.48498 * 109.47001 * 210.00132 * 10 8 6 13 13 H 1.48496 * 109.47206 * 330.00210 * 10 8 6 14 14 C 1.34773 * 120.00399 * 124.24240 * 4 2 1 15 15 O 1.21283 * 120.00460 * 185.39632 * 14 4 2 16 16 C 1.50702 * 119.99791 * 5.39423 * 14 4 2 17 17 C 1.53006 * 109.47361 * 174.87136 * 16 14 4 18 18 C 1.50689 * 109.47178 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00398 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.46924 * 120.62853 * 180.02562 * 20 18 17 22 22 C 1.53191 * 108.89052 * 233.55432 * 21 20 18 23 23 C 1.53074 * 109.29917 * 305.58118 * 22 21 20 24 24 O 1.42897 * 109.44342 * 181.23253 * 23 22 21 25 25 C 1.53042 * 109.65454 * 61.15086 * 23 22 21 26 26 C 1.46917 * 120.62845 * 0.02562 * 20 18 17 27 27 H 1.09002 * 109.47272 * 295.64783 * 1 2 3 28 28 H 1.09004 * 109.47258 * 55.64207 * 1 2 3 29 29 H 1.08993 * 109.47552 * 175.64053 * 1 2 3 30 30 H 1.08994 * 109.46703 * 240.00042 * 2 1 3 31 31 H 1.09003 * 109.46921 * 184.58185 * 3 2 1 32 32 H 1.09000 * 109.47181 * 304.58829 * 3 2 1 33 33 H 1.08999 * 109.47032 * 64.58409 * 3 2 1 34 34 H 1.08997 * 109.46590 * 30.00419 * 5 4 2 35 35 H 1.08999 * 109.47089 * 150.00350 * 5 4 2 36 36 H 0.97001 * 120.00524 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47065 * 54.87044 * 16 14 4 38 38 H 1.09007 * 109.46788 * 294.86929 * 16 14 4 39 39 H 1.08997 * 109.46839 * 59.99489 * 17 16 14 40 40 H 1.09001 * 109.46947 * 300.00110 * 17 16 14 41 41 H 1.08994 * 109.59377 * 353.41629 * 21 20 18 42 42 H 1.09005 * 109.58288 * 113.70395 * 21 20 18 43 43 H 1.08999 * 109.49545 * 65.39237 * 22 21 20 44 44 H 1.09006 * 109.49986 * 185.48868 * 22 21 20 45 45 H 1.09003 * 109.34785 * 301.13144 * 23 22 21 46 46 H 0.96702 * 113.99788 * 59.79523 * 24 23 22 47 47 H 1.09004 * 109.49659 * 178.74955 * 25 23 22 48 48 H 1.09000 * 109.52205 * 58.67058 * 25 23 22 49 49 H 1.08997 * 109.58943 * 246.15726 * 26 20 18 50 50 H 1.09005 * 109.59124 * 6.44342 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 1.5894 -0.2466 2.5248 6 6 2.5497 0.7937 3.0411 7 1 3.3947 1.0944 2.4394 8 6 2.3489 1.3623 4.2809 9 7 1.3197 0.9966 5.0132 10 14 3.5398 2.6514 4.9211 11 1 3.0805 4.0004 4.5033 12 1 3.5925 2.5836 6.4036 13 1 4.8927 2.3949 4.3654 14 6 2.8620 -1.7345 1.0744 15 8 3.1892 -2.3676 2.0558 16 6 3.3991 -2.1151 -0.2813 17 6 4.4243 -3.2402 -0.1263 18 6 4.9608 -3.6212 -1.4820 19 8 4.5622 -3.0495 -2.4745 20 7 5.8837 -4.5973 -1.5915 21 6 6.4167 -4.9794 -2.9063 22 6 6.2474 -6.4908 -3.0899 23 6 6.8952 -7.2195 -1.9098 24 8 6.7642 -8.6307 -2.0922 25 6 6.2038 -6.8074 -0.6081 26 6 6.3760 -5.2993 -0.3985 27 1 -0.3634 0.4448 0.9264 28 1 -0.3634 0.5800 -0.8484 29 1 -0.3634 -1.0246 -0.0781 30 1 1.8932 -0.5138 -0.8900 31 1 3.1270 1.4435 -0.0821 32 1 1.6111 1.9795 -0.8460 33 1 1.7453 1.9320 0.9282 34 1 0.5896 0.1825 2.4592 35 1 1.5755 -1.0979 3.2054 36 1 1.1786 1.3963 5.8857 37 1 3.8767 -1.2488 -0.7391 38 1 2.5794 -2.4550 -0.9144 39 1 3.9467 -4.1064 0.3316 40 1 5.2439 -2.9003 0.5068 41 1 5.8708 -4.4529 -3.6890 42 1 7.4742 -4.7209 -2.9611 43 1 5.1860 -6.7360 -3.1280 44 1 6.7264 -6.8005 -4.0188 45 1 7.9517 -6.9563 -1.8588 46 1 7.1799 -8.9631 -2.8995 47 1 6.6523 -7.3443 0.2278 48 1 5.1423 -7.0478 -0.6675 49 1 7.4307 -5.0692 -0.2482 50 1 5.8048 -4.9819 0.4740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362179953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:32 Heat of formation + Delta-G solvation = -159.105520 kcal Electronic energy + Delta-G solvation = -28766.341966 eV Core-core repulsion = 24792.017993 eV Total energy + Delta-G solvation = -3974.323973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47769 -40.69988 -39.09790 -37.59304 -36.76130 -34.98497 -34.05391 -32.49577 -32.40225 -32.12049 -29.61133 -28.04433 -27.05519 -25.51847 -24.61392 -23.88498 -22.63152 -21.81221 -19.99694 -19.52363 -18.69274 -18.58612 -18.29039 -17.56132 -17.11119 -16.87232 -16.73302 -16.12618 -16.00279 -15.60886 -15.29412 -15.02535 -14.86413 -14.82904 -14.34064 -14.28518 -14.03467 -13.99834 -13.60190 -13.41780 -13.33008 -13.27536 -12.94258 -12.80952 -12.74352 -12.69649 -12.49017 -12.42467 -12.29048 -12.22806 -12.16692 -12.08295 -11.64780 -11.50548 -11.47174 -10.88824 -10.79844 -10.58848 -10.56079 -9.76633 -9.39448 -8.17666 -6.29605 1.37463 1.39608 1.49656 1.52712 1.80664 1.88945 2.34255 2.48336 3.11858 3.23478 3.40056 3.68374 3.77797 3.83426 3.93896 4.03036 4.04958 4.07619 4.16427 4.26939 4.30358 4.43158 4.44040 4.56989 4.67791 4.69605 4.79701 4.81519 4.84108 4.85236 4.87674 4.92814 4.95434 5.01889 5.05132 5.07892 5.14099 5.26221 5.27443 5.44500 5.50624 5.58085 5.66337 5.91123 6.13497 6.25987 6.75545 6.84913 6.89320 7.06830 7.32342 7.50040 8.89657 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002650 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.001976 B =10565.296902 C =11296.825258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.156 4.156 4 N -0.598 5.598 5 C 0.261 3.739 6 C -0.525 4.525 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.499 3.501 15 O -0.593 6.593 16 C -0.110 4.110 17 C -0.118 4.118 18 C 0.522 3.478 19 O -0.573 6.573 20 N -0.613 5.613 21 C 0.110 3.890 22 C -0.157 4.157 23 C 0.107 3.893 24 O -0.586 6.586 25 C -0.130 4.130 26 C 0.105 3.895 27 H 0.041 0.959 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.026 0.974 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.395 0.605 47 H 0.092 0.908 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.252 -13.267 -19.058 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.214 4.214 4 N -0.329 5.329 5 C 0.139 3.861 6 C -0.564 4.564 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.288 3.712 15 O -0.475 6.475 16 C -0.150 4.150 17 C -0.158 4.158 18 C 0.311 3.689 19 O -0.453 6.453 20 N -0.346 5.346 21 C -0.012 4.012 22 C -0.196 4.196 23 C 0.048 3.952 24 O -0.395 6.395 25 C -0.168 4.168 26 C -0.017 4.017 27 H 0.060 0.940 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.246 0.754 47 H 0.111 0.889 48 H 0.076 0.924 49 H 0.114 0.886 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.790 -13.197 -18.354 25.049 hybrid contribution 0.421 0.627 0.488 0.900 sum 11.211 -12.569 -17.866 24.553 Atomic orbital electron populations 1.22116 0.94305 1.02345 1.02706 1.21374 0.95254 0.94079 0.87102 1.22126 1.00732 0.95862 1.02640 1.48344 1.45478 1.30679 1.08383 1.18707 0.94880 0.93301 0.79163 1.21657 1.10812 1.21727 1.02207 0.92694 1.25801 0.97267 0.99332 0.96830 1.70054 1.30349 1.44461 1.12214 0.85503 0.79164 0.79350 0.77342 1.19194 1.20897 1.19628 1.21154 0.78677 0.79805 0.91582 1.90615 1.60650 1.54079 1.42119 1.21325 1.00169 1.00272 0.93217 1.21338 1.00062 1.00089 0.94337 1.20707 0.78249 0.78944 0.90957 1.90659 1.60125 1.54360 1.40159 1.48225 1.41149 1.36121 1.09147 1.21646 1.00067 0.95034 0.84494 1.22605 1.02057 0.94628 1.00299 1.21788 0.98930 0.80454 0.94004 1.86498 1.81813 1.22328 1.48813 1.21881 1.01534 0.95145 0.98229 1.21951 1.01771 0.90775 0.87253 0.93983 0.88721 0.92485 0.87394 0.93493 0.89515 0.93284 0.95604 0.98626 0.92633 0.88022 0.87430 0.87833 0.88023 0.90183 0.89270 0.92675 0.87915 0.90590 0.75445 0.88937 0.92368 0.88609 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.19 71.98 0.66 -4.00 16 2 C 0.12 4.08 3.12 44.99 0.14 4.22 16 3 C -0.16 -5.07 8.74 71.98 0.63 -4.45 16 4 N -0.60 -25.70 2.39 -802.14 -1.92 -27.62 16 5 C 0.26 14.04 4.73 85.63 0.41 14.44 16 6 C -0.53 -29.81 7.72 25.60 0.20 -29.61 16 7 H 0.05 3.08 7.59 -2.91 -0.02 3.06 16 8 C 0.01 0.35 5.46 84.65 0.46 0.81 16 9 N -0.93 -56.40 13.29 21.44 0.28 -56.12 16 10 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.50 20.77 7.66 87.66 0.67 21.44 16 15 O -0.59 -29.60 15.54 -3.04 -0.05 -29.65 16 16 C -0.11 -3.33 3.32 29.85 0.10 -3.24 16 17 C -0.12 -3.14 3.35 29.85 0.10 -3.04 16 18 C 0.52 13.14 7.70 87.65 0.67 13.82 16 19 O -0.57 -17.67 15.39 -3.03 -0.05 -17.71 16 20 N -0.61 -11.57 2.97 -818.88 -2.44 -14.00 16 21 C 0.11 1.64 6.43 86.36 0.55 2.19 16 22 C -0.16 -1.84 5.71 30.68 0.18 -1.66 16 23 C 0.11 1.24 3.43 30.63 0.10 1.34 16 24 O -0.59 -7.67 13.32 -148.98 -1.98 -9.65 16 25 C -0.13 -1.84 5.74 30.68 0.18 -1.67 16 26 C 0.10 1.52 6.34 86.37 0.55 2.06 16 27 H 0.04 1.49 6.34 -2.39 -0.02 1.47 16 28 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 2.91 5.85 -2.39 -0.01 2.90 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.95 6.60 -2.39 -0.02 1.94 16 34 H 0.03 1.43 6.13 -2.39 -0.01 1.41 16 35 H 0.00 -0.27 7.35 -2.39 -0.02 -0.29 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.10 2.96 7.81 -2.39 -0.02 2.94 16 38 H 0.11 2.96 7.68 -2.38 -0.02 2.94 16 39 H 0.10 2.71 7.60 -2.39 -0.02 2.69 16 40 H 0.10 2.69 7.94 -2.39 -0.02 2.67 16 41 H 0.08 1.50 7.00 -2.39 -0.02 1.49 16 42 H 0.09 0.97 8.14 -2.38 -0.02 0.96 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.40 1.67 9.08 -74.06 -0.67 1.00 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 49 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.10 1.51 5.93 -2.38 -0.01 1.50 16 Total: -1.00 -78.32 393.16 1.74 -76.57 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.26 Total: 18.57 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.60 Total: 12.67 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -4.07 Total: -97.74 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.08 Total: -57.02 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.32 1.74 -76.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362179953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.532 kcal (2) G-P(sol) polarization free energy of solvation -78.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds