Wall clock time and date at job start Tue Mar 31 2020 15:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46834 * 2 1 4 4 H 1.09000 * 109.47033 * 304.99650 * 3 2 1 5 5 C 1.50704 * 109.46805 * 185.00272 * 3 2 1 6 6 H 1.08005 * 119.99571 * 239.99819 * 5 3 2 7 7 C 1.37875 * 120.00350 * 59.99448 * 5 3 2 8 8 N 1.31512 * 119.99874 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00104 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47392 * 89.99714 * 9 7 5 11 11 H 1.48494 * 109.47441 * 210.00547 * 9 7 5 12 12 H 1.48508 * 109.46992 * 330.00031 * 9 7 5 13 13 N 1.46494 * 109.47289 * 64.99868 * 3 2 1 14 14 C 1.34773 * 120.00120 * 275.00091 * 13 3 2 15 15 O 1.21283 * 119.99810 * 359.97438 * 14 13 3 16 16 C 1.50705 * 120.00202 * 180.02562 * 14 13 3 17 17 H 1.08992 * 109.47086 * 59.99193 * 16 14 13 18 18 N 1.46499 * 109.47079 * 180.02562 * 16 14 13 19 19 C 1.34775 * 119.99299 * 204.99843 * 18 16 14 20 20 O 1.21276 * 120.00699 * 359.97438 * 19 18 16 21 21 C 1.50709 * 119.99599 * 179.97438 * 19 18 16 22 22 C 1.55238 * 110.58096 * 294.87565 * 21 19 18 23 23 C 1.54894 * 102.58338 * 203.33573 * 22 21 19 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 C 1.53000 * 109.46744 * 299.99745 * 16 14 13 27 27 H 1.08995 * 109.47322 * 64.99694 * 26 16 14 28 28 C 1.52995 * 109.47290 * 185.00040 * 26 16 14 29 29 O 1.42907 * 109.47058 * 304.99925 * 26 16 14 30 30 H 1.08997 * 109.47027 * 59.99890 * 1 2 3 31 31 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46822 * 300.00089 * 1 2 3 33 33 H 1.08993 * 109.47274 * 240.00277 * 2 1 3 34 34 H 1.08999 * 109.47277 * 119.99374 * 2 1 3 35 35 H 0.97001 * 120.00194 * 179.97438 * 8 7 5 36 36 H 0.97008 * 119.99824 * 94.99982 * 13 3 2 37 37 H 0.96998 * 120.00025 * 24.99460 * 18 16 14 38 38 H 1.09006 * 110.43428 * 57.45967 * 21 19 18 39 39 H 1.08996 * 110.89448 * 85.05138 * 22 21 19 40 40 H 1.08993 * 110.76342 * 321.56803 * 22 21 19 41 41 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 42 42 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 43 43 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 44 44 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 45 45 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 46 46 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 47 47 H 1.08995 * 109.47448 * 179.97438 * 28 26 16 48 48 H 1.09003 * 109.47370 * 300.00178 * 28 26 16 49 49 H 1.09007 * 109.46888 * 59.99640 * 28 26 16 50 50 H 0.96702 * 113.99817 * 180.02562 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3519 -0.7597 11 1 6.3836 0.9215 -2.8164 12 1 6.5576 2.0721 -0.6889 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0366 3.3387 2.6544 17 1 0.7280 4.1541 2.8666 18 7 -1.3225 3.8707 2.5267 19 6 -1.7145 4.9083 3.2923 20 8 -0.9426 5.4013 4.0871 21 6 -3.1124 5.4559 3.1606 22 6 -3.3239 6.0798 1.7549 23 6 -4.4861 7.0743 1.9985 24 6 -4.1983 7.6625 3.3953 25 6 -3.3248 6.6336 4.1341 26 6 0.0806 2.3224 3.7972 27 1 1.1080 1.9923 3.9505 28 6 -0.4426 2.9733 5.0791 29 8 -0.7366 1.1977 3.4662 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5137 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0604 -2.9502 36 1 2.2720 2.1233 1.9978 37 1 -1.9400 3.4761 1.8912 38 1 -3.8471 4.6719 3.3441 39 1 -3.6128 5.3180 1.0309 40 1 -2.4275 6.6060 1.4268 41 1 -5.4427 6.5517 1.9944 42 1 -4.4792 7.8613 1.2443 43 1 -3.6625 8.6069 3.2995 44 1 -5.1325 7.8167 3.9352 45 1 -2.3651 7.0784 4.3970 46 1 -3.8348 6.2881 5.0334 47 1 -0.4117 2.2491 5.8931 48 1 0.1807 3.8312 5.3316 49 1 -1.4701 3.3034 4.9257 50 1 -0.7563 0.5118 4.1475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412794544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:07 Heat of formation + Delta-G solvation = -145.947445 kcal Electronic energy + Delta-G solvation = -29759.216325 eV Core-core repulsion = 25785.462930 eV Total energy + Delta-G solvation = -3973.753396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58691 -39.12800 -37.52322 -36.78179 -35.20963 -34.07917 -32.47649 -31.35548 -30.62923 -29.34627 -28.83069 -27.70847 -26.34571 -23.04419 -22.48763 -21.58354 -20.68257 -20.10136 -19.76749 -19.29259 -17.91043 -17.48661 -16.82304 -16.20325 -15.76506 -15.62748 -15.20546 -15.09613 -14.76309 -14.38259 -14.17629 -13.94393 -13.54498 -13.49086 -13.32121 -12.67125 -12.51197 -12.30402 -12.23797 -11.85202 -11.81920 -11.45890 -11.42043 -11.34772 -11.27650 -11.22972 -11.16551 -10.98654 -10.94073 -10.81163 -10.60821 -10.31743 -10.19017 -10.05216 -9.70878 -9.57158 -9.23226 -9.03897 -8.80763 -8.50293 -7.84605 -6.13124 -4.22704 2.64325 3.10214 3.23341 3.30451 3.31673 3.33483 4.03753 4.21659 4.31254 4.36098 4.39693 4.59191 4.93619 4.98131 5.06822 5.16392 5.18377 5.20076 5.28721 5.31762 5.39033 5.46495 5.52263 5.55015 5.68674 5.74019 5.75775 5.87164 5.92228 5.99094 6.11281 6.17738 6.23845 6.44542 6.46675 6.55154 6.73012 7.11725 7.23002 7.37796 7.45013 7.61271 7.62558 7.67084 7.72414 7.89779 8.18501 8.26778 8.62370 8.75276 9.06568 9.44426 10.92011 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.003038 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.728832 B = 9215.290473 C = 9519.919967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.542 6.542 16 C 0.130 3.870 17 H 0.118 0.882 18 N -0.696 5.696 19 C 0.522 3.478 20 O -0.546 6.546 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.111 4.111 26 C 0.097 3.903 27 H 0.067 0.933 28 C -0.175 4.175 29 O -0.554 6.554 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.387 0.613 37 H 0.412 0.588 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 7.858 13.102 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.294 3.706 15 O -0.421 6.421 16 C 0.021 3.979 17 H 0.136 0.864 18 N -0.348 5.348 19 C 0.309 3.691 20 O -0.424 6.424 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.149 4.149 26 C 0.036 3.964 27 H 0.085 0.915 28 C -0.233 4.233 29 O -0.359 6.359 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.219 0.781 37 H 0.250 0.750 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.978 8.425 12.220 19.716 hybrid contribution 1.174 -0.682 0.495 1.445 sum -11.804 7.742 12.715 18.999 Atomic orbital electron populations 1.21865 0.98134 0.98032 1.01676 1.21895 0.92841 0.99553 1.02043 1.18797 0.94120 0.89270 0.80697 0.93354 1.21234 0.90727 1.39081 1.06316 0.92118 1.24876 0.98565 0.94810 0.95379 1.69897 1.35103 1.37549 1.09317 0.86467 0.84924 0.78441 0.77384 1.20562 1.21087 1.19856 1.46401 1.14215 1.55610 1.18607 1.19948 0.83149 0.79401 0.88089 1.90651 1.51315 1.59971 1.40131 1.20980 0.86460 0.96304 0.94179 0.86437 1.45610 1.13801 1.33682 1.41722 1.20465 0.89718 0.79010 0.79929 1.90657 1.54993 1.59738 1.36992 1.22209 0.94021 0.99130 0.98054 1.22558 0.99272 0.98742 0.94685 1.22352 0.98260 0.98533 0.96957 1.22148 0.99561 0.98723 0.95802 1.22061 1.01354 0.94350 0.97107 1.22125 0.94391 0.86499 0.93382 0.91538 1.22550 1.02912 1.01394 0.96402 1.86617 1.70800 1.30919 1.47542 0.93587 0.96189 0.92958 0.88536 0.95164 0.92570 0.78085 0.75048 0.88321 0.90486 0.90811 0.91425 0.91403 0.91738 0.91856 0.89721 0.91690 0.93029 0.90400 0.92097 0.77801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.79 16 2 C -0.12 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.05 4.93 -54.93 -0.27 -14.32 16 14 C 0.51 9.72 5.31 -10.98 -0.06 9.66 16 15 O -0.54 -11.94 12.98 5.56 0.07 -11.86 16 16 C 0.13 1.96 2.57 -69.08 -0.18 1.78 16 17 H 0.12 1.76 7.58 -51.93 -0.39 1.36 16 18 N -0.70 -9.68 4.69 -54.93 -0.26 -9.94 16 19 C 0.52 6.83 5.33 -10.98 -0.06 6.77 16 20 O -0.55 -8.31 12.55 5.56 0.07 -8.24 16 21 C -0.11 -1.15 3.25 -89.92 -0.29 -1.44 16 22 C -0.11 -1.10 6.34 -24.55 -0.16 -1.26 16 23 C -0.12 -0.98 6.82 -25.07 -0.17 -1.15 16 24 C -0.12 -1.00 6.80 -25.62 -0.17 -1.17 16 25 C -0.11 -1.06 6.18 -25.62 -0.16 -1.22 16 26 C 0.10 1.23 3.33 -26.73 -0.09 1.14 16 27 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 28 C -0.18 -2.04 8.02 37.15 0.30 -1.74 16 29 O -0.55 -7.37 12.63 -35.23 -0.44 -7.82 16 30 H 0.04 1.09 7.85 -51.93 -0.41 0.68 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 1.14 5.52 -51.93 -0.29 0.85 16 33 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.39 6.80 8.05 -40.82 -0.33 6.48 16 37 H 0.41 5.88 7.79 -40.82 -0.32 5.56 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.97 6.85 -51.93 -0.36 0.62 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.98 7.19 -51.93 -0.37 0.61 16 49 H 0.06 0.77 5.92 -51.92 -0.31 0.46 16 50 H 0.38 3.45 9.08 45.56 0.41 3.87 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -30.82 386.69 -8.46 -39.28 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -7.65 Total: 16.02 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.42 Total: -0.52 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.10 Total: -48.11 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.30 Total: -27.92 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.82 -8.46 -39.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412794544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.671 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds