Wall clock time and date at job start Tue Mar 31 2020 15:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46817 * 2 1 4 4 H 1.09006 * 109.46974 * 305.51174 * 3 2 1 5 5 C 1.50707 * 109.47122 * 185.51832 * 3 2 1 6 6 H 1.07999 * 119.99775 * 245.48349 * 5 3 2 7 7 C 1.37877 * 120.00091 * 65.47681 * 5 3 2 8 8 N 1.31517 * 120.00070 * 5.37965 * 7 5 3 9 9 Si 1.86799 * 120.00055 * 185.38028 * 7 5 3 10 10 H 1.48498 * 109.47005 * 94.99442 * 9 7 5 11 11 H 1.48493 * 109.47267 * 214.99943 * 9 7 5 12 12 H 1.48510 * 109.46902 * 334.99795 * 9 7 5 13 13 N 1.46493 * 109.47415 * 65.51393 * 3 2 1 14 14 C 1.34774 * 120.00166 * 274.99560 * 13 3 2 15 15 O 1.21287 * 119.99877 * 355.48888 * 14 13 3 16 16 C 1.50704 * 120.00060 * 175.47717 * 14 13 3 17 17 H 1.08997 * 109.46952 * 42.83300 * 16 14 13 18 18 N 1.46502 * 109.46658 * 162.82924 * 16 14 13 19 19 C 1.34775 * 119.99507 * 205.00194 * 18 16 14 20 20 O 1.21283 * 120.00357 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00007 * 180.02562 * 19 18 16 22 22 C 1.54274 * 110.03298 * 297.90673 * 21 19 18 23 23 C 1.54963 * 104.16195 * 217.13552 * 22 21 19 24 24 C 1.54893 * 102.77621 * 37.88753 * 23 22 21 25 25 C 1.53876 * 110.03296 * 180.69361 * 21 19 18 26 26 C 1.52997 * 109.47404 * 282.82615 * 16 14 13 27 27 H 1.08995 * 109.47523 * 295.58916 * 26 16 14 28 28 C 1.53002 * 109.47086 * 175.58458 * 26 16 14 29 29 O 1.42904 * 109.46699 * 55.58999 * 26 16 14 30 30 H 1.09002 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47597 * 300.00329 * 1 2 3 32 32 H 1.09002 * 109.47038 * 60.00652 * 1 2 3 33 33 H 1.08998 * 109.47597 * 239.99671 * 2 1 3 34 34 H 1.09002 * 109.47038 * 119.99348 * 2 1 3 35 35 H 0.96998 * 120.00180 * 180.02562 * 8 7 5 36 36 H 0.96997 * 119.99831 * 95.00579 * 13 3 2 37 37 H 0.96998 * 120.00777 * 25.00151 * 18 16 14 38 38 H 1.08997 * 110.01501 * 59.29759 * 21 19 18 39 39 H 1.09005 * 110.48242 * 335.78985 * 22 21 19 40 40 H 1.08996 * 110.48251 * 98.42051 * 22 21 19 41 41 H 1.09000 * 110.71658 * 279.57487 * 23 22 21 42 42 H 1.09000 * 110.92180 * 156.29445 * 23 22 21 43 43 H 1.08999 * 110.48330 * 203.40390 * 24 23 22 44 44 H 1.08996 * 110.59610 * 80.81659 * 24 23 22 45 45 H 1.09002 * 110.02903 * 238.56889 * 25 21 19 46 46 H 1.08998 * 110.03519 * 359.94714 * 25 21 19 47 47 H 1.09002 * 109.46940 * 60.00625 * 28 26 16 48 48 H 1.09002 * 109.47107 * 180.02562 * 28 26 16 49 49 H 1.08995 * 109.47314 * 300.00586 * 28 26 16 50 50 H 0.96702 * 114.00065 * 304.18841 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5981 1.9841 -0.8366 5 6 3.5408 1.4448 -0.1366 6 1 4.1562 1.8063 0.6739 7 6 4.1281 0.9853 -1.2963 8 7 3.3793 0.6445 -2.3224 9 14 5.9875 0.8468 -1.4101 10 1 6.4024 -0.5381 -1.0710 11 1 6.4243 1.1701 -2.7921 12 1 6.6140 1.7985 -0.4576 13 7 1.6630 2.0938 1.2569 14 6 0.4467 2.6604 1.3840 15 8 -0.3046 2.7035 0.4329 16 6 0.0202 3.2401 2.7081 17 1 0.8482 3.7995 3.1434 18 7 -1.1207 4.1362 2.5039 19 6 -1.3625 5.1299 3.3818 20 8 -0.6355 5.2825 4.3404 21 6 -2.5364 6.0514 3.1721 22 6 -2.3719 6.8238 1.8469 23 6 -2.9313 8.2349 2.1585 24 6 -2.4498 8.4814 3.6100 25 6 -2.5863 7.1048 4.2927 26 6 -0.3838 2.1077 3.6543 27 1 -1.2610 1.5975 3.2568 28 6 -0.7113 2.6868 5.0321 29 8 0.6952 1.1782 3.7726 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.7925 0.3209 -3.1381 36 1 2.2888 2.1173 1.9976 37 1 -1.7020 4.0145 1.7370 38 1 -3.4631 5.4777 3.1574 39 1 -1.3198 6.8835 1.5682 40 1 -2.9509 6.3494 1.0545 41 1 -4.0200 8.2382 2.1069 42 1 -2.5116 8.9784 1.4808 43 1 -3.0857 9.2166 4.1031 44 1 -1.4107 8.8101 3.6186 45 1 -3.5376 7.0428 4.8212 46 1 -1.7620 6.9490 4.9887 47 1 -1.5343 3.3958 4.9420 48 1 -0.9986 1.8800 5.7064 49 1 0.1660 3.1970 5.4297 50 1 0.9993 0.8190 2.9278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412794547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:11 Heat of formation + Delta-G solvation = -147.763472 kcal Electronic energy + Delta-G solvation = -29795.734897 eV Core-core repulsion = 25821.902752 eV Total energy + Delta-G solvation = -3973.832145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76223 -39.43949 -37.46258 -36.77779 -35.48661 -34.24216 -32.48647 -31.34652 -30.98557 -29.41199 -28.84818 -27.78144 -26.39367 -23.18971 -22.35089 -21.63856 -20.92328 -20.28154 -19.83256 -19.55504 -17.97993 -17.66044 -16.93376 -16.50204 -15.87196 -15.62962 -15.40880 -14.98290 -14.91008 -14.42942 -14.33497 -13.72875 -13.64658 -13.50520 -13.34082 -12.80231 -12.71655 -12.26859 -12.18661 -11.95150 -11.69909 -11.59522 -11.57110 -11.43723 -11.35118 -11.32039 -11.29669 -11.06964 -10.98398 -10.86727 -10.71344 -10.47146 -10.33213 -10.26891 -9.87766 -9.78124 -9.39286 -9.19221 -8.88909 -8.60942 -8.08155 -6.21859 -4.29261 2.54348 2.89249 3.07061 3.21132 3.28962 3.31103 3.86158 4.24714 4.30402 4.31766 4.38754 4.55671 4.82750 4.91027 5.06982 5.11932 5.13344 5.13646 5.23251 5.29344 5.40067 5.44901 5.47820 5.58390 5.64936 5.72035 5.87372 5.87762 5.94857 5.99239 6.08887 6.13824 6.19015 6.19671 6.30357 6.35969 6.41884 6.79341 7.00098 7.12697 7.19494 7.42296 7.47198 7.58320 7.66635 7.71118 7.96606 8.15821 8.42449 8.64420 8.86608 9.37514 10.85729 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003199 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.824838 B = 8750.049766 C = 9353.371535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.267 3.733 4 H 0.058 0.942 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.494 3.506 15 O -0.539 6.539 16 C 0.090 3.910 17 H 0.113 0.887 18 N -0.704 5.704 19 C 0.519 3.481 20 O -0.534 6.534 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.118 4.118 26 C 0.103 3.897 27 H 0.059 0.941 28 C -0.134 4.134 29 O -0.564 6.564 30 H 0.028 0.972 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.394 0.606 37 H 0.412 0.588 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 9.161 10.506 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.166 3.834 4 H 0.076 0.924 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.277 3.723 15 O -0.417 6.417 16 C -0.020 4.020 17 H 0.131 0.869 18 N -0.359 5.359 19 C 0.306 3.694 20 O -0.411 6.411 21 C -0.133 4.133 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.156 4.156 26 C 0.042 3.958 27 H 0.077 0.923 28 C -0.191 4.191 29 O -0.372 6.372 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.228 0.772 37 H 0.249 0.751 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.829 9.304 10.919 19.245 hybrid contribution 1.112 -0.385 -0.905 1.485 sum -11.717 8.919 10.014 17.808 Atomic orbital electron populations 1.21847 0.98252 0.98589 1.01020 1.21918 0.92683 0.99772 1.01926 1.18899 0.94851 0.88938 0.80735 0.92389 1.21189 0.90418 1.44224 1.01782 0.91898 1.24880 0.98613 0.94876 0.95106 1.69952 1.35322 1.42946 1.03524 0.86456 0.84820 0.78493 0.77515 1.20492 1.21115 1.19758 1.46742 1.14025 1.55309 1.19155 1.20317 0.83459 0.79431 0.89065 1.90672 1.53148 1.58049 1.39871 1.21756 0.91631 0.93389 0.95195 0.86947 1.45663 1.30219 1.30995 1.29023 1.20593 0.86520 0.80262 0.82018 1.90682 1.49016 1.71487 1.29918 1.21948 0.96959 0.96539 0.97872 1.22392 1.02270 0.95537 0.95291 1.22507 1.00575 0.96305 0.96709 1.22363 1.01460 0.96919 0.95459 1.22165 1.03336 0.92854 0.97250 1.22056 0.89618 0.87991 0.96143 0.92332 1.21808 1.02841 1.00143 0.94306 1.86525 1.52883 1.60952 1.36810 0.95263 0.94781 0.92824 0.89398 0.94433 0.92507 0.77157 0.75114 0.88364 0.90915 0.90616 0.91311 0.91305 0.91623 0.91499 0.91535 0.89086 0.91205 0.92468 0.91057 0.76665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.59 37.16 0.32 -2.45 16 2 C -0.12 -2.72 5.49 -26.73 -0.15 -2.87 16 3 C 0.27 6.20 2.11 -69.08 -0.15 6.06 16 4 H 0.06 1.59 7.49 -51.93 -0.39 1.20 16 5 C -0.54 -13.55 8.67 -34.44 -0.30 -13.85 16 6 H 0.06 1.54 7.72 -52.49 -0.41 1.13 16 7 C 0.07 1.80 5.22 -17.82 -0.09 1.70 16 8 N -0.88 -23.91 11.97 55.43 0.66 -23.25 16 9 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.27 3.63 -54.93 -0.20 -13.47 16 14 C 0.49 8.81 5.02 -10.98 -0.06 8.75 16 15 O -0.54 -10.95 13.40 5.55 0.07 -10.88 16 16 C 0.09 1.33 2.44 -69.08 -0.17 1.16 16 17 H 0.11 1.76 7.58 -51.93 -0.39 1.36 16 18 N -0.70 -9.13 4.92 -54.93 -0.27 -9.40 16 19 C 0.52 6.48 5.54 -10.98 -0.06 6.42 16 20 O -0.53 -8.02 12.35 5.56 0.07 -7.96 16 21 C -0.11 -1.05 3.30 -90.65 -0.30 -1.35 16 22 C -0.12 -1.05 6.30 -25.03 -0.16 -1.21 16 23 C -0.12 -0.95 6.91 -24.70 -0.17 -1.12 16 24 C -0.12 -1.01 6.83 -25.07 -0.17 -1.19 16 25 C -0.12 -1.08 6.40 -25.61 -0.16 -1.24 16 26 C 0.10 1.46 3.44 -26.73 -0.09 1.37 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 C -0.13 -1.78 8.15 37.16 0.30 -1.47 16 29 O -0.56 -8.67 13.06 -35.23 -0.46 -9.13 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.63 5.73 -51.93 -0.30 0.34 16 32 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 33 H 0.09 2.18 6.63 -51.93 -0.34 1.83 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.39 6.78 7.84 -40.82 -0.32 6.46 16 37 H 0.41 5.13 7.71 -40.82 -0.31 4.81 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.02 6.39 -51.93 -0.33 0.69 16 47 H 0.07 0.90 5.66 -51.93 -0.29 0.60 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 1.03 7.81 -51.93 -0.41 0.62 16 50 H 0.38 5.86 6.39 45.56 0.29 6.15 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -28.48 385.20 -8.55 -37.03 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -7.81 Total: 17.39 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.40 Total: -1.28 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.19 Total: -46.12 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.32 Total: -27.96 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.48 -8.55 -37.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412794547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.734 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds