Wall clock time and date at job start Tue Mar 31 2020 15:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46817 * 2 1 4 4 H 1.09006 * 109.46974 * 305.51174 * 3 2 1 5 5 C 1.50707 * 109.47122 * 185.51832 * 3 2 1 6 6 H 1.07999 * 119.99775 * 245.48349 * 5 3 2 7 7 C 1.37877 * 120.00091 * 65.47681 * 5 3 2 8 8 N 1.31517 * 120.00070 * 5.37965 * 7 5 3 9 9 Si 1.86799 * 120.00055 * 185.38028 * 7 5 3 10 10 H 1.48498 * 109.47005 * 94.99442 * 9 7 5 11 11 H 1.48493 * 109.47267 * 214.99943 * 9 7 5 12 12 H 1.48510 * 109.46902 * 334.99795 * 9 7 5 13 13 N 1.46493 * 109.47415 * 65.51393 * 3 2 1 14 14 C 1.34774 * 120.00166 * 274.99560 * 13 3 2 15 15 O 1.21287 * 119.99877 * 355.48888 * 14 13 3 16 16 C 1.50704 * 120.00060 * 175.47717 * 14 13 3 17 17 H 1.08997 * 109.46952 * 42.83300 * 16 14 13 18 18 N 1.46502 * 109.46658 * 162.82924 * 16 14 13 19 19 C 1.34775 * 119.99507 * 205.00194 * 18 16 14 20 20 O 1.21283 * 120.00357 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00007 * 180.02562 * 19 18 16 22 22 C 1.54274 * 110.03298 * 297.90673 * 21 19 18 23 23 C 1.54963 * 104.16195 * 217.13552 * 22 21 19 24 24 C 1.54893 * 102.77621 * 37.88753 * 23 22 21 25 25 C 1.53876 * 110.03296 * 180.69361 * 21 19 18 26 26 C 1.52997 * 109.47404 * 282.82615 * 16 14 13 27 27 H 1.08995 * 109.47523 * 295.58916 * 26 16 14 28 28 C 1.53002 * 109.47086 * 175.58458 * 26 16 14 29 29 O 1.42904 * 109.46699 * 55.58999 * 26 16 14 30 30 H 1.09002 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47597 * 300.00329 * 1 2 3 32 32 H 1.09002 * 109.47038 * 60.00652 * 1 2 3 33 33 H 1.08998 * 109.47597 * 239.99671 * 2 1 3 34 34 H 1.09002 * 109.47038 * 119.99348 * 2 1 3 35 35 H 0.96998 * 120.00180 * 180.02562 * 8 7 5 36 36 H 0.96997 * 119.99831 * 95.00579 * 13 3 2 37 37 H 0.96998 * 120.00777 * 25.00151 * 18 16 14 38 38 H 1.08997 * 110.01501 * 59.29759 * 21 19 18 39 39 H 1.09005 * 110.48242 * 335.78985 * 22 21 19 40 40 H 1.08996 * 110.48251 * 98.42051 * 22 21 19 41 41 H 1.09000 * 110.71658 * 279.57487 * 23 22 21 42 42 H 1.09000 * 110.92180 * 156.29445 * 23 22 21 43 43 H 1.08999 * 110.48330 * 203.40390 * 24 23 22 44 44 H 1.08996 * 110.59610 * 80.81659 * 24 23 22 45 45 H 1.09002 * 110.02903 * 238.56889 * 25 21 19 46 46 H 1.08998 * 110.03519 * 359.94714 * 25 21 19 47 47 H 1.09002 * 109.46940 * 60.00625 * 28 26 16 48 48 H 1.09002 * 109.47107 * 180.02562 * 28 26 16 49 49 H 1.08995 * 109.47314 * 300.00586 * 28 26 16 50 50 H 0.96702 * 114.00065 * 304.18841 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5981 1.9841 -0.8366 5 6 3.5408 1.4448 -0.1366 6 1 4.1562 1.8063 0.6739 7 6 4.1281 0.9853 -1.2963 8 7 3.3793 0.6445 -2.3224 9 14 5.9875 0.8468 -1.4101 10 1 6.4024 -0.5381 -1.0710 11 1 6.4243 1.1701 -2.7921 12 1 6.6140 1.7985 -0.4576 13 7 1.6630 2.0938 1.2569 14 6 0.4467 2.6604 1.3840 15 8 -0.3046 2.7035 0.4329 16 6 0.0202 3.2401 2.7081 17 1 0.8482 3.7995 3.1434 18 7 -1.1207 4.1362 2.5039 19 6 -1.3625 5.1299 3.3818 20 8 -0.6355 5.2825 4.3404 21 6 -2.5364 6.0514 3.1721 22 6 -2.3719 6.8238 1.8469 23 6 -2.9313 8.2349 2.1585 24 6 -2.4498 8.4814 3.6100 25 6 -2.5863 7.1048 4.2927 26 6 -0.3838 2.1077 3.6543 27 1 -1.2610 1.5975 3.2568 28 6 -0.7113 2.6868 5.0321 29 8 0.6952 1.1782 3.7726 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.7925 0.3209 -3.1381 36 1 2.2888 2.1173 1.9976 37 1 -1.7020 4.0145 1.7370 38 1 -3.4631 5.4777 3.1574 39 1 -1.3198 6.8835 1.5682 40 1 -2.9509 6.3494 1.0545 41 1 -4.0200 8.2382 2.1069 42 1 -2.5116 8.9784 1.4808 43 1 -3.0857 9.2166 4.1031 44 1 -1.4107 8.8101 3.6186 45 1 -3.5376 7.0428 4.8212 46 1 -1.7620 6.9490 4.9887 47 1 -1.5343 3.3958 4.9420 48 1 -0.9986 1.8800 5.7064 49 1 0.1660 3.1970 5.4297 50 1 0.9993 0.8190 2.9278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412794547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:10 Heat of formation + Delta-G solvation = -167.404548 kcal Electronic energy + Delta-G solvation = -29796.586598 eV Core-core repulsion = 25821.902752 eV Total energy + Delta-G solvation = -3974.683846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95127 -40.69175 -38.54672 -37.81380 -37.13642 -35.48242 -34.32513 -32.95677 -32.17058 -30.30330 -29.56145 -29.30921 -27.85835 -25.00105 -23.34032 -22.95817 -21.75753 -21.49441 -21.35186 -20.69141 -19.22607 -18.89304 -18.30088 -17.77000 -17.22929 -17.07269 -16.58548 -16.27149 -16.09988 -15.80490 -15.59051 -15.15824 -14.72004 -14.60366 -14.45999 -14.24896 -14.12469 -13.72441 -13.38373 -13.26545 -13.18181 -13.09850 -12.93154 -12.70038 -12.57622 -12.53021 -12.23969 -12.18454 -12.11495 -12.00933 -11.93727 -11.66814 -11.64830 -11.45781 -11.38653 -11.09484 -10.86549 -10.79163 -10.56700 -10.09645 -9.77882 -8.20090 -6.33705 1.42622 1.43851 1.46416 1.54752 1.61243 1.83912 2.35796 2.54006 3.12256 3.16512 3.48377 3.58592 3.60204 3.72925 3.82120 3.89641 4.24758 4.29570 4.40260 4.46814 4.48700 4.53037 4.55242 4.58145 4.69739 4.70141 4.80898 4.82428 4.90024 4.98616 5.03061 5.09334 5.14911 5.23429 5.24997 5.26279 5.27151 5.38512 5.44661 5.45985 5.48743 5.58207 5.73491 5.84584 6.06663 6.41936 6.46130 6.72795 6.77735 7.15128 7.24166 7.40550 8.87474 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003199 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.824838 B = 8750.049766 C = 9353.371535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C 0.278 3.722 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.699 5.699 14 C 0.497 3.503 15 O -0.563 6.563 16 C 0.104 3.896 17 H 0.106 0.894 18 N -0.702 5.702 19 C 0.518 3.482 20 O -0.560 6.560 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.118 4.118 26 C 0.105 3.895 27 H 0.067 0.933 28 C -0.126 4.126 29 O -0.570 6.570 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.265 0.735 36 H 0.404 0.596 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.057 0.943 50 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 9.478 11.851 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 C 0.175 3.825 4 H 0.028 0.972 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.350 5.350 14 C 0.282 3.718 15 O -0.442 6.442 16 C -0.006 4.006 17 H 0.124 0.876 18 N -0.357 5.357 19 C 0.307 3.693 20 O -0.439 6.439 21 C -0.128 4.128 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.155 4.155 26 C 0.044 3.956 27 H 0.085 0.915 28 C -0.183 4.183 29 O -0.377 6.377 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -13.885 9.638 12.294 20.900 hybrid contribution 1.414 -0.432 -1.315 1.979 sum -12.472 9.206 10.978 18.995 Atomic orbital electron populations 1.21695 0.96557 0.99817 1.00342 1.21748 0.94113 0.98573 1.01116 1.18462 0.93757 0.89341 0.80948 0.97217 1.21551 0.91589 1.43725 1.01919 0.91310 1.25663 1.02724 0.94690 0.94882 1.70083 1.37012 1.43945 1.04010 0.85473 0.79829 0.78667 0.77230 1.19837 1.21398 1.19095 1.46488 1.14873 1.55512 1.18099 1.20771 0.82605 0.78564 0.89890 1.90666 1.53709 1.58765 1.41099 1.21547 0.92251 0.93808 0.93020 0.87644 1.45688 1.29605 1.30973 1.29431 1.21188 0.86968 0.79947 0.81208 1.90679 1.50154 1.72044 1.31023 1.22040 0.96366 0.96168 0.98216 1.22406 1.01188 0.96655 0.95371 1.22509 1.01592 0.95281 0.96207 1.22369 1.01029 0.96816 0.96001 1.22166 1.03378 0.93181 0.96814 1.22142 0.89514 0.87476 0.96479 0.91539 1.21738 1.02387 1.00419 0.93730 1.86526 1.53288 1.61144 1.36792 0.93011 0.93697 0.95162 0.92403 0.92858 0.92619 0.75980 0.74632 0.85821 0.93206 0.89447 0.89495 0.91107 0.89971 0.92983 0.89590 0.91457 0.90712 0.91240 0.92387 0.76759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.59 71.98 0.62 -4.37 16 2 C -0.12 -5.15 5.49 30.59 0.17 -4.98 16 3 C 0.28 13.17 2.11 44.25 0.09 13.26 16 4 H 0.01 0.57 7.49 -2.38 -0.02 0.55 16 5 C -0.55 -27.92 8.67 25.60 0.22 -27.70 16 6 H 0.07 3.33 7.72 -2.91 -0.02 3.31 16 7 C 0.02 1.11 5.22 84.65 0.44 1.55 16 8 N -0.91 -50.76 11.97 21.45 0.26 -50.51 16 9 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.70 -26.51 3.63 -446.08 -1.62 -28.12 16 14 C 0.50 17.68 5.02 87.66 0.44 18.12 16 15 O -0.56 -23.04 13.40 -3.05 -0.04 -23.08 16 16 C 0.10 3.01 2.44 44.25 0.11 3.12 16 17 H 0.11 3.26 7.58 -2.39 -0.02 3.24 16 18 N -0.70 -17.59 4.92 -446.09 -2.19 -19.78 16 19 C 0.52 12.44 5.54 87.66 0.49 12.92 16 20 O -0.56 -16.59 12.35 -3.04 -0.04 -16.63 16 21 C -0.11 -1.81 3.30 -10.81 -0.04 -1.85 16 22 C -0.12 -1.94 6.30 31.70 0.20 -1.74 16 23 C -0.12 -1.56 6.91 31.91 0.22 -1.34 16 24 C -0.12 -1.82 6.83 31.67 0.22 -1.61 16 25 C -0.12 -1.94 6.40 31.32 0.20 -1.74 16 26 C 0.10 2.81 3.44 30.59 0.11 2.92 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 C -0.13 -3.13 8.15 71.98 0.59 -2.55 16 29 O -0.57 -16.69 13.06 -148.98 -1.95 -18.64 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.64 5.73 -2.39 -0.01 1.63 16 32 H 0.03 1.30 7.94 -2.39 -0.02 1.29 16 33 H 0.06 2.92 6.63 -2.39 -0.02 2.91 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.40 13.78 7.84 -92.71 -0.73 13.05 16 37 H 0.42 9.92 7.71 -92.71 -0.71 9.21 16 38 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.04 7.85 -2.38 -0.02 1.03 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.46 6.39 -2.39 -0.02 1.45 16 47 H 0.07 1.79 5.66 -2.39 -0.01 1.78 16 48 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 1.61 7.81 -2.39 -0.02 1.59 16 50 H 0.38 11.20 6.39 -74.06 -0.47 10.73 16 Total: -1.00 -62.22 385.20 -0.43 -62.66 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: -0.95 Total: 46.62 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 4.07 Total: 4.01 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -3.56 Total: -98.41 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -2.02 Total: -58.34 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -62.22 -0.43 -62.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412794547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.746 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds