Wall clock time and date at job start Tue Mar 31 2020 15:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 H 1.09002 * 109.47046 * 182.37325 * 3 2 1 5 5 C 1.50694 * 109.47212 * 62.37503 * 3 2 1 6 6 O 1.21284 * 119.99610 * 256.58091 * 5 3 2 7 7 N 1.34775 * 120.00586 * 76.57828 * 5 3 2 8 8 C 1.47070 * 136.05156 * 354.24871 * 7 5 3 9 9 C 1.53242 * 88.07854 * 207.19639 * 8 7 5 10 10 O 1.42898 * 114.01479 * 87.71488 * 9 8 7 11 11 C 1.50704 * 114.32405 * 220.46925 * 9 8 7 12 12 H 1.07999 * 119.99687 * 98.91394 * 11 9 8 13 13 C 1.37878 * 119.99873 * 278.91079 * 11 9 8 14 14 N 1.31513 * 119.99868 * 6.04468 * 13 11 9 15 15 Si 1.86797 * 119.99785 * 186.03714 * 13 11 9 16 16 H 1.48496 * 109.47224 * 94.99893 * 15 13 11 17 17 H 1.48510 * 109.47082 * 215.00168 * 15 13 11 18 18 H 1.48504 * 109.47325 * 334.99734 * 15 13 11 19 19 C 1.47065 * 136.06059 * 174.61020 * 7 5 3 20 20 N 1.46902 * 109.47140 * 302.37200 * 3 2 1 21 21 C 1.47020 * 110.99684 * 310.02611 * 20 3 2 22 22 C 1.53099 * 109.25263 * 177.60662 * 21 20 3 23 23 O 1.43013 * 109.26005 * 56.85262 * 22 21 20 24 24 C 1.43027 * 113.77407 * 301.34964 * 23 22 21 25 25 H 1.08993 * 109.47250 * 298.69018 * 24 23 22 26 26 C 1.53006 * 109.54492 * 178.55777 * 24 23 22 27 27 C 1.52994 * 109.46895 * 65.19715 * 26 24 23 28 28 C 1.47009 * 111.00071 * 186.39265 * 20 3 2 29 29 H 1.08998 * 109.47232 * 184.85422 * 1 2 3 30 30 H 1.08998 * 109.47047 * 304.85354 * 1 2 3 31 31 H 1.09000 * 109.47036 * 64.85090 * 1 2 3 32 32 H 1.08999 * 109.47211 * 240.00258 * 2 1 3 33 33 H 1.08996 * 109.47168 * 119.99481 * 2 1 3 34 34 H 1.08993 * 113.46573 * 321.92738 * 8 7 5 35 35 H 1.09002 * 113.46590 * 92.37406 * 8 7 5 36 36 H 0.96700 * 114.00069 * 91.29275 * 10 9 8 37 37 H 0.96998 * 119.99806 * 180.02562 * 14 13 11 38 38 H 1.08999 * 113.46497 * 267.62762 * 19 7 5 39 39 H 1.08993 * 113.46526 * 38.00785 * 19 7 5 40 40 H 1.08990 * 109.50944 * 297.54230 * 21 20 3 41 41 H 1.09001 * 109.50468 * 57.63239 * 21 20 3 42 42 H 1.09000 * 109.50412 * 176.78662 * 22 21 20 43 43 H 1.09004 * 109.50840 * 296.91322 * 22 21 20 44 44 H 1.08996 * 109.46981 * 185.20021 * 26 24 23 45 45 H 1.09001 * 109.46787 * 305.19926 * 26 24 23 46 46 H 1.09003 * 109.46832 * 180.02562 * 27 26 24 47 47 H 1.09005 * 109.47557 * 299.99772 * 27 26 24 48 48 H 1.08996 * 109.47515 * 60.00144 * 27 26 24 49 49 H 1.08994 * 109.50510 * 302.33001 * 28 20 3 50 50 H 1.09004 * 109.50636 * 62.41636 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4429 -0.0426 5 6 1.5863 2.1357 1.2588 6 8 0.6624 2.9205 1.2195 7 7 2.2071 1.8837 2.4282 8 6 3.2524 0.9602 2.8946 9 6 2.6259 1.0380 4.2909 10 8 1.5842 0.0858 4.5148 11 6 3.6253 1.1082 5.4167 12 1 3.8704 2.0608 5.8626 13 6 4.2267 -0.0438 5.8774 14 7 4.0200 -1.1860 5.2590 15 14 5.3352 0.0178 7.3796 16 1 4.5488 -0.3314 8.5898 17 1 6.4471 -0.9528 7.2146 18 1 5.8913 1.3867 7.5287 19 6 2.1329 2.4065 3.8008 20 7 1.5041 2.1514 -1.1698 21 6 1.7229 1.3775 -2.4005 22 6 1.0980 2.1225 -3.5831 23 8 1.6584 3.4359 -3.6625 24 6 1.4640 4.2181 -2.4810 25 1 0.3967 4.3520 -2.3054 26 6 2.1292 5.5848 -2.6567 27 6 1.4190 6.3583 -3.7694 28 6 2.0916 3.4938 -1.2871 29 1 -0.3633 -1.0239 0.0870 30 1 -0.3633 0.5873 0.8433 31 1 -0.3633 0.4367 -0.9302 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.1876 -0.0310 2.4459 35 1 4.2568 1.3810 2.8454 36 1 1.8898 -0.7496 4.8941 37 1 4.4428 -1.9965 5.5834 38 1 2.8361 3.2163 3.9953 39 1 1.1183 2.6435 4.1207 40 1 2.7929 1.2581 -2.5700 41 1 1.2583 0.3965 -2.3010 42 1 1.3071 1.5812 -4.5057 43 1 0.0199 2.1948 -3.4391 44 1 2.0608 6.1448 -1.7241 45 1 3.1775 5.4472 -2.9219 46 1 1.8932 7.3317 -3.8949 47 1 1.4875 5.7983 -4.7021 48 1 0.3708 6.4958 -3.5044 49 1 1.8957 4.0578 -0.3752 50 1 3.1678 3.4082 -1.4381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433916026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:42 Heat of formation + Delta-G solvation = -87.495463 kcal Electronic energy + Delta-G solvation = -29958.555172 eV Core-core repulsion = 25987.336444 eV Total energy + Delta-G solvation = -3971.218728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37396 -39.31755 -37.71353 -35.95207 -34.08380 -34.01550 -32.69569 -32.30797 -30.13875 -29.02032 -27.79872 -25.82066 -25.15100 -24.63158 -24.13177 -22.29743 -21.27382 -20.49238 -19.70992 -18.10703 -17.45063 -16.66485 -16.54160 -16.26014 -15.63640 -15.39028 -15.12969 -15.00743 -14.55138 -14.32731 -14.12441 -13.86383 -13.64689 -13.46651 -13.32633 -13.22625 -12.78923 -12.52801 -12.19799 -12.01782 -12.00608 -11.76525 -11.72081 -11.49224 -11.36314 -11.18257 -11.10719 -11.07963 -11.03817 -10.83767 -10.69825 -10.52418 -10.38163 -10.26718 -9.67358 -9.49285 -9.06598 -8.86756 -8.42370 -8.25812 -7.83498 -6.43111 -4.53585 3.11977 3.17132 3.20730 3.22725 3.34362 3.67324 3.91329 4.15952 4.64605 4.78315 4.83699 4.89603 4.92546 5.03815 5.09878 5.11938 5.16522 5.23363 5.31796 5.39966 5.46351 5.53686 5.59811 5.59897 5.71706 5.73503 5.80859 5.84381 5.87226 5.92920 5.95940 6.06865 6.13340 6.17775 6.19182 6.33171 6.40136 6.50476 6.58923 6.62691 6.72563 6.92156 6.97966 7.08015 7.14804 7.58099 7.74990 8.49509 8.54005 8.82779 9.18111 9.28484 10.63034 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.003049 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.669220 B = 9181.535285 C = 9752.396875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.076 3.924 4 H 0.057 0.943 5 C 0.545 3.455 6 O -0.543 6.543 7 N -0.638 5.638 8 C 0.078 3.922 9 C 0.241 3.759 10 O -0.566 6.566 11 C -0.538 4.538 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.892 5.892 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.108 3.892 20 N -0.509 5.509 21 C 0.013 3.987 22 C 0.068 3.932 23 O -0.384 6.384 24 C 0.098 3.902 25 H 0.069 0.931 26 C -0.116 4.116 27 C -0.147 4.147 28 C 0.024 3.976 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.388 0.612 37 H 0.272 0.728 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.093 0.907 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 4.407 -14.877 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.035 4.035 4 H 0.075 0.925 5 C 0.333 3.667 6 O -0.421 6.421 7 N -0.372 5.372 8 C -0.045 4.045 9 C 0.199 3.801 10 O -0.376 6.376 11 C -0.576 4.576 12 H 0.090 0.910 13 C -0.131 4.131 14 N -0.531 5.531 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.014 4.014 20 N -0.234 5.234 21 C -0.115 4.115 22 C -0.010 4.010 23 O -0.303 6.303 24 C 0.040 3.960 25 H 0.087 0.913 26 C -0.154 4.154 27 C -0.204 4.204 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.240 0.760 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.111 0.889 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.869 5.269 -15.441 16.566 hybrid contribution 1.955 -0.863 1.146 2.425 sum -0.914 4.407 -14.295 14.987 Atomic orbital electron populations 1.21649 0.94290 1.00856 1.03040 1.21597 0.97969 0.92893 1.02869 1.21543 0.97464 0.94925 0.89611 0.92486 1.19631 0.82544 0.81913 0.82629 1.90629 1.28751 1.37307 1.85411 1.49736 1.39341 1.39993 1.08156 1.24078 0.91024 0.92068 0.97365 1.19458 0.85240 0.85113 0.90256 1.86082 1.35729 1.29899 1.85849 1.21394 1.23507 0.94612 1.18127 0.90972 1.25083 0.95899 0.95213 0.96899 1.69663 1.44499 0.99501 1.39419 0.86367 0.79804 0.78262 0.82398 1.20265 1.20974 1.19542 1.23287 1.01085 0.98628 0.78390 1.61867 1.58248 1.02088 1.01243 1.22918 0.99748 0.98621 0.90233 1.22609 0.97667 0.83266 0.97411 1.87933 1.79304 1.25423 1.37611 1.22170 0.99593 0.90473 0.83746 0.91317 1.21521 1.00275 0.93591 0.99992 1.21688 1.00217 0.99491 0.99016 1.22848 0.96458 0.90739 1.00370 0.93262 0.92099 0.92065 0.91340 0.90247 0.91634 0.90403 0.75984 0.91839 0.89807 0.91659 0.94141 0.88868 0.88609 0.92303 0.90413 0.91310 0.92847 0.92059 0.92819 0.88878 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.33 37.16 0.35 -1.78 16 2 C -0.12 -1.71 5.11 -26.73 -0.14 -1.84 16 3 C 0.08 1.23 2.02 -68.86 -0.14 1.09 16 4 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 5 C 0.54 10.85 5.49 -10.99 -0.06 10.79 16 6 O -0.54 -12.20 15.83 5.55 0.09 -12.11 16 7 N -0.64 -13.22 3.69 -185.36 -0.68 -13.91 16 8 C 0.08 1.64 7.79 -8.63 -0.07 1.57 16 9 C 0.24 5.61 1.44 -91.39 -0.13 5.48 16 10 O -0.57 -14.04 13.56 -35.23 -0.48 -14.52 16 11 C -0.54 -13.12 8.66 -34.44 -0.30 -13.42 16 12 H 0.07 1.73 7.82 -52.49 -0.41 1.31 16 13 C 0.07 1.75 5.27 -17.82 -0.09 1.66 16 14 N -0.89 -21.94 11.60 55.43 0.64 -21.30 16 15 Si 0.90 19.01 29.54 -169.99 -5.02 13.99 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C 0.11 2.33 8.04 -8.50 -0.07 2.26 16 20 N -0.51 -7.51 3.58 -227.72 -0.82 -8.32 16 21 C 0.01 0.15 4.75 -3.71 -0.02 0.13 16 22 C 0.07 0.73 7.01 37.21 0.26 0.99 16 23 O -0.38 -4.84 10.02 -35.23 -0.35 -5.19 16 24 C 0.10 1.24 2.80 -26.68 -0.07 1.16 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 27 C -0.15 -1.38 9.81 37.15 0.36 -1.01 16 28 C 0.02 0.35 4.62 -3.72 -0.02 0.33 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.13 6.94 -51.93 -0.36 0.77 16 31 H 0.06 0.87 6.80 -51.93 -0.35 0.51 16 32 H 0.07 0.83 6.41 -51.93 -0.33 0.50 16 33 H 0.08 1.30 6.92 -51.93 -0.36 0.95 16 34 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 35 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 36 H 0.39 9.66 6.90 45.56 0.31 9.97 16 37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.00 5.35 -51.93 -0.28 0.72 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.60 7.83 -51.93 -0.41 0.20 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 1.53 6.47 -51.93 -0.34 1.20 16 50 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -27.44 387.52 -9.00 -36.43 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -7.93 Total: 13.06 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -0.28 Total: 6.03 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.86 Total: -43.53 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.74 Total: -31.82 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.44 -9.00 -36.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433916026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.062 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds