Wall clock time and date at job start Tue Mar 31 2020 15:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 H 1.09002 * 109.47046 * 182.37325 * 3 2 1 5 5 C 1.50694 * 109.47212 * 62.37503 * 3 2 1 6 6 O 1.21284 * 119.99610 * 256.58091 * 5 3 2 7 7 N 1.34775 * 120.00586 * 76.57828 * 5 3 2 8 8 C 1.47070 * 136.05156 * 354.24871 * 7 5 3 9 9 C 1.53242 * 88.07854 * 207.19639 * 8 7 5 10 10 O 1.42898 * 114.01479 * 87.71488 * 9 8 7 11 11 C 1.50704 * 114.32405 * 220.46925 * 9 8 7 12 12 H 1.07999 * 119.99687 * 98.91394 * 11 9 8 13 13 C 1.37878 * 119.99873 * 278.91079 * 11 9 8 14 14 N 1.31513 * 119.99868 * 6.04468 * 13 11 9 15 15 Si 1.86797 * 119.99785 * 186.03714 * 13 11 9 16 16 H 1.48496 * 109.47224 * 94.99893 * 15 13 11 17 17 H 1.48510 * 109.47082 * 215.00168 * 15 13 11 18 18 H 1.48504 * 109.47325 * 334.99734 * 15 13 11 19 19 C 1.47065 * 136.06059 * 174.61020 * 7 5 3 20 20 N 1.46902 * 109.47140 * 302.37200 * 3 2 1 21 21 C 1.47020 * 110.99684 * 310.02611 * 20 3 2 22 22 C 1.53099 * 109.25263 * 177.60662 * 21 20 3 23 23 O 1.43013 * 109.26005 * 56.85262 * 22 21 20 24 24 C 1.43027 * 113.77407 * 301.34964 * 23 22 21 25 25 H 1.08993 * 109.47250 * 298.69018 * 24 23 22 26 26 C 1.53006 * 109.54492 * 178.55777 * 24 23 22 27 27 C 1.52994 * 109.46895 * 65.19715 * 26 24 23 28 28 C 1.47009 * 111.00071 * 186.39265 * 20 3 2 29 29 H 1.08998 * 109.47232 * 184.85422 * 1 2 3 30 30 H 1.08998 * 109.47047 * 304.85354 * 1 2 3 31 31 H 1.09000 * 109.47036 * 64.85090 * 1 2 3 32 32 H 1.08999 * 109.47211 * 240.00258 * 2 1 3 33 33 H 1.08996 * 109.47168 * 119.99481 * 2 1 3 34 34 H 1.08993 * 113.46573 * 321.92738 * 8 7 5 35 35 H 1.09002 * 113.46590 * 92.37406 * 8 7 5 36 36 H 0.96700 * 114.00069 * 91.29275 * 10 9 8 37 37 H 0.96998 * 119.99806 * 180.02562 * 14 13 11 38 38 H 1.08999 * 113.46497 * 267.62762 * 19 7 5 39 39 H 1.08993 * 113.46526 * 38.00785 * 19 7 5 40 40 H 1.08990 * 109.50944 * 297.54230 * 21 20 3 41 41 H 1.09001 * 109.50468 * 57.63239 * 21 20 3 42 42 H 1.09000 * 109.50412 * 176.78662 * 22 21 20 43 43 H 1.09004 * 109.50840 * 296.91322 * 22 21 20 44 44 H 1.08996 * 109.46981 * 185.20021 * 26 24 23 45 45 H 1.09001 * 109.46787 * 305.19926 * 26 24 23 46 46 H 1.09003 * 109.46832 * 180.02562 * 27 26 24 47 47 H 1.09005 * 109.47557 * 299.99772 * 27 26 24 48 48 H 1.08996 * 109.47515 * 60.00144 * 27 26 24 49 49 H 1.08994 * 109.50510 * 302.33001 * 28 20 3 50 50 H 1.09004 * 109.50636 * 62.41636 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4429 -0.0426 5 6 1.5863 2.1357 1.2588 6 8 0.6624 2.9205 1.2195 7 7 2.2071 1.8837 2.4282 8 6 3.2524 0.9602 2.8946 9 6 2.6259 1.0380 4.2909 10 8 1.5842 0.0858 4.5148 11 6 3.6253 1.1082 5.4167 12 1 3.8704 2.0608 5.8626 13 6 4.2267 -0.0438 5.8774 14 7 4.0200 -1.1860 5.2590 15 14 5.3352 0.0178 7.3796 16 1 4.5488 -0.3314 8.5898 17 1 6.4471 -0.9528 7.2146 18 1 5.8913 1.3867 7.5287 19 6 2.1329 2.4065 3.8008 20 7 1.5041 2.1514 -1.1698 21 6 1.7229 1.3775 -2.4005 22 6 1.0980 2.1225 -3.5831 23 8 1.6584 3.4359 -3.6625 24 6 1.4640 4.2181 -2.4810 25 1 0.3967 4.3520 -2.3054 26 6 2.1292 5.5848 -2.6567 27 6 1.4190 6.3583 -3.7694 28 6 2.0916 3.4938 -1.2871 29 1 -0.3633 -1.0239 0.0870 30 1 -0.3633 0.5873 0.8433 31 1 -0.3633 0.4367 -0.9302 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.1876 -0.0310 2.4459 35 1 4.2568 1.3810 2.8454 36 1 1.8898 -0.7496 4.8941 37 1 4.4428 -1.9965 5.5834 38 1 2.8361 3.2163 3.9953 39 1 1.1183 2.6435 4.1207 40 1 2.7929 1.2581 -2.5700 41 1 1.2583 0.3965 -2.3010 42 1 1.3071 1.5812 -4.5057 43 1 0.0199 2.1948 -3.4391 44 1 2.0608 6.1448 -1.7241 45 1 3.1775 5.4472 -2.9219 46 1 1.8932 7.3317 -3.8949 47 1 1.4875 5.7983 -4.7021 48 1 0.3708 6.4958 -3.5044 49 1 1.8957 4.0578 -0.3752 50 1 3.1678 3.4082 -1.4381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433916026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:41 Heat of formation + Delta-G solvation = -106.549923 kcal Electronic energy + Delta-G solvation = -29959.381435 eV Core-core repulsion = 25987.336444 eV Total energy + Delta-G solvation = -3972.044991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74410 -40.69468 -39.21406 -37.26985 -35.88848 -34.94536 -34.20009 -33.87149 -31.16232 -30.55064 -29.07078 -27.38394 -26.87686 -25.92043 -25.18440 -23.42550 -22.49455 -21.66546 -21.14714 -19.75901 -19.20548 -17.95798 -17.78235 -17.47219 -17.14325 -16.84529 -16.56617 -16.24687 -15.97169 -15.77749 -15.38616 -14.98891 -14.92042 -14.81893 -14.60639 -14.34334 -14.21704 -13.98139 -13.74958 -13.59525 -13.55558 -12.93433 -12.82779 -12.76688 -12.73850 -12.60997 -12.43754 -12.26955 -12.24348 -12.13202 -11.96827 -11.94113 -11.82716 -11.34962 -11.23693 -10.85190 -10.71671 -10.55126 -10.18933 -9.56044 -9.43297 -8.27200 -6.43964 1.45703 1.50297 1.58385 1.61861 1.84596 2.40237 2.64285 2.80323 2.94883 3.35685 3.66123 3.75693 3.81475 3.85580 3.96006 4.03147 4.08246 4.11409 4.21532 4.28061 4.33041 4.38537 4.44939 4.47888 4.56306 4.61465 4.62776 4.70506 4.74907 4.76429 4.81245 4.89925 4.92436 4.94494 4.97987 4.99401 5.07812 5.14303 5.21078 5.23568 5.38089 5.41002 5.70796 5.74255 5.88820 5.91356 6.19879 6.61823 6.89234 7.20142 7.30443 7.34601 8.78385 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.003049 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.669220 B = 9181.535285 C = 9752.396875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C 0.084 3.916 4 H 0.063 0.937 5 C 0.540 3.460 6 O -0.573 6.573 7 N -0.640 5.640 8 C 0.094 3.906 9 C 0.224 3.776 10 O -0.578 6.578 11 C -0.557 4.557 12 H 0.072 0.928 13 C 0.037 3.963 14 N -0.909 5.909 15 Si 0.964 3.036 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.108 3.892 20 N -0.521 5.521 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.104 3.896 25 H 0.056 0.944 26 C -0.115 4.115 27 C -0.142 4.142 28 C 0.027 3.973 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.385 0.615 37 H 0.274 0.726 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 4.021 -16.438 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.028 4.028 4 H 0.081 0.919 5 C 0.330 3.670 6 O -0.453 6.453 7 N -0.374 5.374 8 C -0.029 4.029 9 C 0.183 3.817 10 O -0.388 6.388 11 C -0.595 4.595 12 H 0.090 0.910 13 C -0.165 4.165 14 N -0.548 5.548 15 Si 0.790 3.210 16 H -0.205 1.205 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.015 4.015 20 N -0.247 5.247 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.309 6.309 24 C 0.046 3.954 25 H 0.074 0.926 26 C -0.153 4.153 27 C -0.199 4.199 28 C -0.101 4.101 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.875 4.883 -17.023 17.808 hybrid contribution 1.583 -0.744 1.626 2.388 sum -0.292 4.139 -15.397 15.946 Atomic orbital electron populations 1.21574 0.94553 1.01209 1.01715 1.21605 0.97594 0.91954 1.03700 1.21468 0.97670 0.95307 0.88335 0.91938 1.20402 0.81759 0.81450 0.83372 1.90604 1.30042 1.38683 1.85921 1.49787 1.39420 1.39966 1.08274 1.23838 0.91177 0.92032 0.95887 1.19680 0.85271 0.85517 0.91263 1.86073 1.36696 1.30028 1.85970 1.21584 1.24042 0.94908 1.18934 0.91028 1.25705 0.96979 0.94889 0.98958 1.69725 1.44936 0.99859 1.40240 0.85444 0.78134 0.78218 0.79237 1.20458 1.20670 1.19242 1.23293 1.00644 0.98427 0.79153 1.61858 1.58450 1.02461 1.01924 1.23052 1.00418 0.98997 0.88989 1.22814 0.97434 0.82610 0.98311 1.87934 1.79445 1.26246 1.37236 1.22097 0.98794 0.91261 0.83234 0.92628 1.21537 1.00392 0.92706 1.00628 1.21650 1.00170 0.99952 0.98162 1.22785 0.96713 0.90645 0.99951 0.91531 0.96212 0.90991 0.87754 0.92030 0.91873 0.89621 0.76388 0.91601 0.88123 0.93064 0.93571 0.87362 0.85570 0.92492 0.90318 0.91013 0.91362 0.92412 0.92893 0.91590 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.33 71.98 0.67 -3.23 16 2 C -0.11 -3.11 5.11 30.60 0.16 -2.95 16 3 C 0.08 2.64 2.02 44.17 0.09 2.73 16 4 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 5 C 0.54 21.81 5.49 87.66 0.48 22.29 16 6 O -0.57 -26.45 15.83 -3.04 -0.05 -26.50 16 7 N -0.64 -26.89 3.69 -859.23 -3.17 -30.06 16 8 C 0.09 3.95 7.79 83.10 0.65 4.59 16 9 C 0.22 10.54 1.44 -11.29 -0.02 10.52 16 10 O -0.58 -29.31 13.56 -148.98 -2.02 -31.33 16 11 C -0.56 -27.12 8.66 25.60 0.22 -26.90 16 12 H 0.07 3.41 7.82 -2.91 -0.02 3.39 16 13 C 0.04 1.74 5.27 84.66 0.45 2.19 16 14 N -0.91 -44.43 11.60 21.45 0.25 -44.18 16 15 Si 0.96 38.48 29.54 68.60 2.03 40.51 16 16 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 19 C 0.11 4.70 8.04 83.18 0.67 5.37 16 20 N -0.52 -14.81 3.58 -874.38 -3.13 -17.94 16 21 C 0.01 0.26 4.75 86.31 0.41 0.67 16 22 C 0.06 1.23 7.01 72.02 0.50 1.73 16 23 O -0.39 -9.07 10.02 -148.98 -1.49 -10.56 16 24 C 0.10 2.56 2.80 30.63 0.09 2.64 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 C -0.11 -2.33 5.65 30.59 0.17 -2.16 16 27 C -0.14 -2.46 9.81 71.98 0.71 -1.76 16 28 C 0.03 0.78 4.62 86.31 0.40 1.18 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.02 0.72 6.94 -2.39 -0.02 0.70 16 31 H 0.07 1.92 6.80 -2.39 -0.02 1.91 16 32 H 0.10 2.20 6.41 -2.39 -0.02 2.19 16 33 H 0.06 1.97 6.92 -2.39 -0.02 1.96 16 34 H 0.06 2.68 6.95 -2.39 -0.02 2.66 16 35 H 0.09 3.46 8.10 -2.39 -0.02 3.44 16 36 H 0.38 19.56 6.90 -74.06 -0.51 19.05 16 37 H 0.27 12.74 8.31 -92.71 -0.77 11.96 16 38 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 39 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 1.93 5.35 -2.39 -0.01 1.92 16 42 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.04 7.83 -2.38 -0.02 1.03 16 48 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 2.23 6.47 -2.39 -0.02 2.21 16 50 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -58.91 387.52 -1.53 -60.44 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: 0.42 Total: 42.69 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 5.65 Total: 16.93 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -6.05 Total: -92.18 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -3.56 Total: -68.40 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -58.91 -1.53 -60.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433916026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.109 kcal (2) G-P(sol) polarization free energy of solvation -58.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds