Wall clock time and date at job start Tue Mar 31 2020 15:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47215 * 2 1 4 4 H 1.09001 * 109.46993 * 176.96526 * 3 2 1 5 5 C 1.50708 * 109.47080 * 296.96517 * 3 2 1 6 6 O 1.21282 * 119.99894 * 120.00381 * 5 3 2 7 7 N 1.34778 * 119.99673 * 299.99919 * 5 3 2 8 8 C 1.47578 * 134.48932 * 180.02562 * 7 5 3 9 9 C 1.53947 * 86.11816 * 155.35906 * 8 7 5 10 10 O 1.42901 * 113.73728 * 269.15355 * 9 8 7 11 11 C 1.50693 * 113.74227 * 137.95218 * 9 8 7 12 12 H 1.08001 * 120.00555 * 16.90054 * 11 9 8 13 13 C 1.37877 * 120.00163 * 196.90004 * 11 9 8 14 14 N 1.31512 * 120.00263 * 188.05992 * 13 11 9 15 15 Si 1.86808 * 119.99809 * 8.05295 * 13 11 9 16 16 H 1.48497 * 109.46906 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46779 * 60.00498 * 15 13 11 18 18 H 1.48500 * 109.47325 * 300.00306 * 15 13 11 19 19 C 1.47810 * 134.45904 * 359.86542 * 7 5 3 20 20 N 1.46892 * 109.47301 * 56.96422 * 3 2 1 21 21 C 1.47015 * 111.00090 * 49.79007 * 20 3 2 22 22 C 1.53103 * 109.26106 * 182.39253 * 21 20 3 23 23 O 1.43017 * 109.25608 * 303.15442 * 22 21 20 24 24 C 1.43016 * 113.74226 * 58.66940 * 23 22 21 25 25 H 1.09000 * 109.50388 * 61.26107 * 24 23 22 26 26 C 1.52997 * 109.50514 * 181.39431 * 24 23 22 27 27 C 1.52999 * 109.47146 * 294.77940 * 26 24 23 28 28 C 1.47020 * 111.00316 * 173.42469 * 20 3 2 29 29 H 1.08996 * 109.47394 * 65.11955 * 1 2 3 30 30 H 1.08998 * 109.47377 * 185.11863 * 1 2 3 31 31 H 1.09001 * 109.47199 * 305.11892 * 1 2 3 32 32 H 1.09003 * 109.47161 * 239.99563 * 2 1 3 33 33 H 1.09005 * 109.47279 * 120.00321 * 2 1 3 34 34 H 1.08996 * 113.77314 * 41.05692 * 8 7 5 35 35 H 1.08996 * 113.77032 * 269.65864 * 8 7 5 36 36 H 0.96703 * 113.99900 * 175.34809 * 10 9 8 37 37 H 0.96993 * 120.00310 * 354.88759 * 14 13 11 38 38 H 1.09006 * 113.76881 * 90.38262 * 19 7 5 39 39 H 1.09003 * 113.83758 * 318.92271 * 19 7 5 40 40 H 1.09003 * 109.50863 * 302.33015 * 21 20 3 41 41 H 1.09004 * 109.50643 * 62.46077 * 21 20 3 42 42 H 1.08992 * 109.50599 * 183.21761 * 22 21 20 43 43 H 1.08994 * 109.53836 * 63.10472 * 22 21 20 44 44 H 1.08996 * 109.47392 * 54.78238 * 26 24 23 45 45 H 1.09000 * 109.46597 * 174.78379 * 26 24 23 46 46 H 1.09000 * 109.47014 * 60.00694 * 27 26 24 47 47 H 1.09002 * 109.47294 * 180.02562 * 27 26 24 48 48 H 1.08996 * 109.47219 * 300.00404 * 27 26 24 49 49 H 1.08996 * 109.50561 * 297.54404 * 28 20 3 50 50 H 1.09002 * 109.50286 * 57.62869 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1286 1.4428 0.0544 5 6 1.6000 2.1308 -1.2664 6 8 0.8985 3.1184 -1.2075 7 7 1.9861 1.6489 -2.4644 8 6 1.7538 2.0519 -3.8649 9 6 3.0693 1.3189 -4.1843 10 8 4.2256 2.1556 -4.1146 11 6 3.0146 0.4961 -5.4456 12 1 2.2300 0.6665 -6.1680 13 6 3.9661 -0.4743 -5.6775 14 7 4.0151 -1.0822 -6.8427 15 14 5.1861 -0.9256 -4.3366 16 1 6.0976 -1.9873 -4.8337 17 1 4.4511 -1.4212 -3.1452 18 1 5.9795 0.2735 -3.9653 19 6 2.8149 0.5060 -2.9022 20 7 1.4914 2.1558 1.1610 21 6 1.6928 1.3848 2.3965 22 6 1.0552 2.1346 3.5692 23 8 1.6179 3.4467 3.6520 24 6 1.4394 4.2257 2.4660 25 1 0.3746 4.3611 2.2763 26 6 2.1050 5.5914 2.6468 27 6 1.3820 6.3692 3.7483 28 6 2.0810 3.4971 1.2821 29 1 -0.3634 0.4323 -0.9322 30 1 -0.3634 -1.0235 0.0917 31 1 -0.3634 0.5912 0.8406 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8008 3.1290 -4.0258 35 1 0.8740 1.5915 -4.3144 36 1 5.0602 1.6847 -4.2446 37 1 3.3372 -0.9021 -7.5126 38 1 2.2476 -0.4100 -3.0681 39 1 3.7073 0.3511 -2.2959 40 1 1.2264 0.4049 2.2942 41 1 2.7604 1.2631 2.5796 42 1 1.2514 1.5952 4.4958 43 1 -0.0208 2.2093 3.4124 44 1 3.1494 5.4526 2.9257 45 1 2.0495 6.1491 1.7119 46 1 1.4374 5.8115 4.6831 47 1 1.8558 7.3424 3.8768 48 1 0.3375 6.5081 3.4694 49 1 3.1547 3.4091 1.4474 50 1 1.8985 4.0589 0.3660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433916055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:56 Heat of formation + Delta-G solvation = -80.835502 kcal Electronic energy + Delta-G solvation = -30189.743494 eV Core-core repulsion = 26218.813564 eV Total energy + Delta-G solvation = -3970.929930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52080 -39.46004 -37.86685 -36.12993 -34.34129 -34.06608 -32.83267 -32.66130 -30.16574 -29.11409 -27.92633 -26.11055 -25.27249 -24.60565 -24.14627 -22.38932 -21.26836 -20.49953 -19.67642 -18.55155 -17.97616 -16.71858 -16.66479 -16.50004 -15.92524 -15.74308 -15.30121 -15.20584 -14.74860 -14.36830 -14.22072 -13.91910 -13.69611 -13.61382 -13.32954 -13.29862 -13.23845 -12.70726 -12.52813 -12.16772 -12.06362 -12.05748 -11.78485 -11.66041 -11.46091 -11.37582 -11.22862 -11.11018 -11.02970 -10.84356 -10.75252 -10.48880 -10.41980 -10.00950 -9.73578 -9.48360 -9.27227 -9.02375 -8.57312 -8.39109 -8.02687 -6.76354 -4.52367 2.99283 3.01218 3.08597 3.14417 3.30672 3.63091 3.78279 4.11971 4.52560 4.70788 4.79938 4.82289 4.85645 4.92227 5.01762 5.03379 5.05631 5.12989 5.20092 5.25626 5.31661 5.36686 5.43976 5.54611 5.55202 5.61751 5.71017 5.72720 5.80246 5.83276 5.89656 5.90528 5.94873 6.02621 6.04355 6.11232 6.17138 6.17941 6.26804 6.37654 6.40065 6.66163 6.84229 6.90847 7.11536 7.47913 8.03651 8.25072 8.51824 8.61430 8.65052 9.24024 10.59815 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.003414 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.275921 B = 8200.429968 C = 8611.134017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.072 3.928 4 H 0.062 0.938 5 C 0.540 3.460 6 O -0.541 6.541 7 N -0.632 5.632 8 C 0.131 3.869 9 C 0.197 3.803 10 O -0.568 6.568 11 C -0.613 4.613 12 H 0.070 0.930 13 C 0.034 3.966 14 N -0.890 5.890 15 Si 1.041 2.959 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.280 1.280 19 C 0.060 3.940 20 N -0.510 5.510 21 C 0.012 3.988 22 C 0.068 3.932 23 O -0.384 6.384 24 C 0.098 3.902 25 H 0.068 0.932 26 C -0.116 4.116 27 C -0.147 4.147 28 C 0.019 3.981 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.366 0.634 37 H 0.274 0.726 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.035 0.965 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 3.511 19.193 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.039 4.039 4 H 0.080 0.920 5 C 0.329 3.671 6 O -0.419 6.419 7 N -0.367 5.367 8 C 0.010 3.990 9 C 0.156 3.844 10 O -0.377 6.377 11 C -0.651 4.651 12 H 0.089 0.911 13 C -0.174 4.174 14 N -0.523 5.523 15 Si 0.870 3.130 16 H -0.203 1.203 17 H -0.198 1.198 18 H -0.207 1.207 19 C -0.063 4.063 20 N -0.235 5.235 21 C -0.116 4.116 22 C -0.009 4.009 23 O -0.303 6.303 24 C 0.041 3.959 25 H 0.086 0.914 26 C -0.154 4.154 27 C -0.204 4.204 28 C -0.109 4.109 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.338 3.739 19.914 20.535 hybrid contribution -0.111 0.072 -0.660 0.673 sum -3.449 3.810 19.253 19.927 Atomic orbital electron populations 1.21689 0.94332 1.01089 1.03107 1.21678 0.97937 0.93151 1.03047 1.21524 0.97814 0.94666 0.89912 0.92017 1.19816 0.79674 0.84362 0.83261 1.90607 1.38239 1.26696 1.86398 1.50139 1.51069 1.30542 1.04915 1.23187 0.97902 1.00501 0.77449 1.20447 0.84146 0.87836 0.91932 1.86392 1.16510 1.39813 1.95028 1.22234 1.17177 1.20256 1.05424 0.91141 1.25822 0.98432 0.93374 0.99732 1.70788 1.33856 1.43379 1.04234 0.84162 0.76540 0.77096 0.75228 1.20275 1.19797 1.20727 1.24676 0.93440 0.91292 0.96927 1.61881 1.58047 1.02311 1.01305 1.22934 0.99851 0.98563 0.90296 1.22592 0.97507 0.83381 0.97443 1.87940 1.79586 1.25540 1.37226 1.22175 0.99559 0.90549 0.83656 0.91395 1.21519 1.00211 0.93584 1.00079 1.21688 1.00155 0.99488 0.99069 1.22984 0.96229 0.90571 1.01067 0.92732 0.92991 0.91306 0.90411 0.91047 0.90911 0.89167 0.78301 0.91539 0.88761 0.91793 0.88962 0.94103 0.88631 0.92376 0.91321 0.90335 0.92086 0.92831 0.92849 0.94686 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 37.16 0.34 -1.52 16 2 C -0.12 -1.55 5.02 -26.74 -0.13 -1.69 16 3 C 0.07 1.09 2.03 -68.87 -0.14 0.95 16 4 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 5 C 0.54 10.12 6.07 -10.98 -0.07 10.06 16 6 O -0.54 -11.48 15.10 5.56 0.08 -11.39 16 7 N -0.63 -12.29 3.57 -178.11 -0.64 -12.93 16 8 C 0.13 2.72 8.23 -2.97 -0.02 2.70 16 9 C 0.20 4.37 1.06 -90.86 -0.10 4.27 16 10 O -0.57 -12.86 13.45 -35.23 -0.47 -13.33 16 11 C -0.61 -15.48 9.05 -34.44 -0.31 -15.79 16 12 H 0.07 1.92 8.05 -52.49 -0.42 1.50 16 13 C 0.03 0.87 5.46 -17.82 -0.10 0.77 16 14 N -0.89 -24.77 13.70 55.43 0.76 -24.01 16 15 Si 1.04 21.53 24.81 -169.99 -4.22 17.32 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.03 6.21 56.52 0.35 -4.68 16 18 H -0.28 -5.25 5.59 56.52 0.32 -4.93 16 19 C 0.06 1.15 3.86 -2.85 -0.01 1.14 16 20 N -0.51 -7.12 3.48 -227.71 -0.79 -7.91 16 21 C 0.01 0.13 4.71 -3.71 -0.02 0.11 16 22 C 0.07 0.69 7.01 37.21 0.26 0.96 16 23 O -0.38 -4.72 10.02 -35.23 -0.35 -5.08 16 24 C 0.10 1.22 2.80 -26.68 -0.07 1.15 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 C -0.12 -1.24 5.64 -26.73 -0.15 -1.39 16 27 C -0.15 -1.37 9.81 37.16 0.36 -1.00 16 28 C 0.02 0.27 4.58 -3.71 -0.02 0.26 16 29 H 0.05 0.83 7.49 -51.93 -0.39 0.44 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.88 6.63 -51.93 -0.34 0.54 16 32 H 0.08 1.07 6.04 -51.93 -0.31 0.75 16 33 H 0.07 0.76 6.46 -51.93 -0.34 0.42 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 36 H 0.37 7.71 5.46 45.56 0.25 7.96 16 37 H 0.27 7.63 8.72 -40.82 -0.36 7.28 16 38 H 0.09 1.77 7.88 -51.93 -0.41 1.36 16 39 H 0.06 1.15 6.77 -51.93 -0.35 0.80 16 40 H 0.09 0.89 5.44 -51.93 -0.28 0.61 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.59 7.83 -51.93 -0.41 0.19 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.11 1.76 5.90 -51.93 -0.31 1.45 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -29.32 376.00 -8.23 -37.55 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -8.09 Total: 13.14 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.17 Total: 0.97 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.67 Total: -44.85 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.74 Total: -29.80 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.22 Total: 17.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.32 -8.23 -37.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433916055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.281 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds