Wall clock time and date at job start Tue Mar 31 2020 15:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47215 * 2 1 4 4 H 1.09001 * 109.46993 * 176.96526 * 3 2 1 5 5 C 1.50708 * 109.47080 * 296.96517 * 3 2 1 6 6 O 1.21282 * 119.99894 * 120.00381 * 5 3 2 7 7 N 1.34778 * 119.99673 * 299.99919 * 5 3 2 8 8 C 1.47578 * 134.48932 * 180.02562 * 7 5 3 9 9 C 1.53947 * 86.11816 * 155.35906 * 8 7 5 10 10 O 1.42901 * 113.73728 * 269.15355 * 9 8 7 11 11 C 1.50693 * 113.74227 * 137.95218 * 9 8 7 12 12 H 1.08001 * 120.00555 * 16.90054 * 11 9 8 13 13 C 1.37877 * 120.00163 * 196.90004 * 11 9 8 14 14 N 1.31512 * 120.00263 * 188.05992 * 13 11 9 15 15 Si 1.86808 * 119.99809 * 8.05295 * 13 11 9 16 16 H 1.48497 * 109.46906 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46779 * 60.00498 * 15 13 11 18 18 H 1.48500 * 109.47325 * 300.00306 * 15 13 11 19 19 C 1.47810 * 134.45904 * 359.86542 * 7 5 3 20 20 N 1.46892 * 109.47301 * 56.96422 * 3 2 1 21 21 C 1.47015 * 111.00090 * 49.79007 * 20 3 2 22 22 C 1.53103 * 109.26106 * 182.39253 * 21 20 3 23 23 O 1.43017 * 109.25608 * 303.15442 * 22 21 20 24 24 C 1.43016 * 113.74226 * 58.66940 * 23 22 21 25 25 H 1.09000 * 109.50388 * 61.26107 * 24 23 22 26 26 C 1.52997 * 109.50514 * 181.39431 * 24 23 22 27 27 C 1.52999 * 109.47146 * 294.77940 * 26 24 23 28 28 C 1.47020 * 111.00316 * 173.42469 * 20 3 2 29 29 H 1.08996 * 109.47394 * 65.11955 * 1 2 3 30 30 H 1.08998 * 109.47377 * 185.11863 * 1 2 3 31 31 H 1.09001 * 109.47199 * 305.11892 * 1 2 3 32 32 H 1.09003 * 109.47161 * 239.99563 * 2 1 3 33 33 H 1.09005 * 109.47279 * 120.00321 * 2 1 3 34 34 H 1.08996 * 113.77314 * 41.05692 * 8 7 5 35 35 H 1.08996 * 113.77032 * 269.65864 * 8 7 5 36 36 H 0.96703 * 113.99900 * 175.34809 * 10 9 8 37 37 H 0.96993 * 120.00310 * 354.88759 * 14 13 11 38 38 H 1.09006 * 113.76881 * 90.38262 * 19 7 5 39 39 H 1.09003 * 113.83758 * 318.92271 * 19 7 5 40 40 H 1.09003 * 109.50863 * 302.33015 * 21 20 3 41 41 H 1.09004 * 109.50643 * 62.46077 * 21 20 3 42 42 H 1.08992 * 109.50599 * 183.21761 * 22 21 20 43 43 H 1.08994 * 109.53836 * 63.10472 * 22 21 20 44 44 H 1.08996 * 109.47392 * 54.78238 * 26 24 23 45 45 H 1.09000 * 109.46597 * 174.78379 * 26 24 23 46 46 H 1.09000 * 109.47014 * 60.00694 * 27 26 24 47 47 H 1.09002 * 109.47294 * 180.02562 * 27 26 24 48 48 H 1.08996 * 109.47219 * 300.00404 * 27 26 24 49 49 H 1.08996 * 109.50561 * 297.54404 * 28 20 3 50 50 H 1.09002 * 109.50286 * 57.62869 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1286 1.4428 0.0544 5 6 1.6000 2.1308 -1.2664 6 8 0.8985 3.1184 -1.2075 7 7 1.9861 1.6489 -2.4644 8 6 1.7538 2.0519 -3.8649 9 6 3.0693 1.3189 -4.1843 10 8 4.2256 2.1556 -4.1146 11 6 3.0146 0.4961 -5.4456 12 1 2.2300 0.6665 -6.1680 13 6 3.9661 -0.4743 -5.6775 14 7 4.0151 -1.0822 -6.8427 15 14 5.1861 -0.9256 -4.3366 16 1 6.0976 -1.9873 -4.8337 17 1 4.4511 -1.4212 -3.1452 18 1 5.9795 0.2735 -3.9653 19 6 2.8149 0.5060 -2.9022 20 7 1.4914 2.1558 1.1610 21 6 1.6928 1.3848 2.3965 22 6 1.0552 2.1346 3.5692 23 8 1.6179 3.4467 3.6520 24 6 1.4394 4.2257 2.4660 25 1 0.3746 4.3611 2.2763 26 6 2.1050 5.5914 2.6468 27 6 1.3820 6.3692 3.7483 28 6 2.0810 3.4971 1.2821 29 1 -0.3634 0.4323 -0.9322 30 1 -0.3634 -1.0235 0.0917 31 1 -0.3634 0.5912 0.8406 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8008 3.1290 -4.0258 35 1 0.8740 1.5915 -4.3144 36 1 5.0602 1.6847 -4.2446 37 1 3.3372 -0.9021 -7.5126 38 1 2.2476 -0.4100 -3.0681 39 1 3.7073 0.3511 -2.2959 40 1 1.2264 0.4049 2.2942 41 1 2.7604 1.2631 2.5796 42 1 1.2514 1.5952 4.4958 43 1 -0.0208 2.2093 3.4124 44 1 3.1494 5.4526 2.9257 45 1 2.0495 6.1491 1.7119 46 1 1.4374 5.8115 4.6831 47 1 1.8558 7.3424 3.8768 48 1 0.3375 6.5081 3.4694 49 1 3.1547 3.4091 1.4474 50 1 1.8985 4.0589 0.3660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433916055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:55 Heat of formation + Delta-G solvation = -103.462379 kcal Electronic energy + Delta-G solvation = -30190.724669 eV Core-core repulsion = 26218.813564 eV Total energy + Delta-G solvation = -3971.911105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82486 -40.74265 -39.28171 -37.32466 -36.05599 -34.93061 -34.65753 -33.87062 -31.11488 -30.58233 -29.10950 -27.61443 -26.86287 -25.87249 -25.15756 -23.39956 -22.40367 -21.62088 -21.13482 -20.09656 -19.79313 -18.06618 -17.87329 -17.47839 -17.44375 -16.97144 -16.70707 -16.32367 -16.05857 -15.64564 -15.31180 -15.23636 -14.93889 -14.80105 -14.62211 -14.49827 -14.40300 -14.10695 -13.94796 -13.74134 -13.54815 -13.01034 -12.92043 -12.75777 -12.66610 -12.42978 -12.38376 -12.20858 -12.13947 -11.99480 -11.93742 -11.84862 -11.72677 -11.32365 -11.25408 -10.94421 -10.84266 -10.58012 -10.32078 -9.69514 -9.40888 -8.82001 -6.60889 1.39022 1.47200 1.56235 1.63009 1.77992 2.42297 2.62339 2.81594 2.91567 3.19904 3.49050 3.71081 3.75158 3.80568 3.87417 3.98728 4.03596 4.09254 4.21507 4.25302 4.31939 4.33468 4.35347 4.39791 4.49839 4.56137 4.56861 4.61695 4.66651 4.74137 4.76383 4.79785 4.82384 4.94496 4.96943 4.98891 5.00671 5.07552 5.11741 5.20676 5.39162 5.40523 5.58720 5.75615 5.90447 5.93239 6.21487 6.38882 6.73564 6.91847 7.12821 7.26657 8.52851 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.003414 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.275921 B = 8200.429968 C = 8611.134017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.069 0.931 5 C 0.536 3.464 6 O -0.572 6.572 7 N -0.632 5.632 8 C 0.126 3.874 9 C 0.190 3.810 10 O -0.575 6.575 11 C -0.618 4.618 12 H 0.031 0.969 13 C -0.010 4.010 14 N -0.924 5.924 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.229 1.229 18 H -0.248 1.248 19 C 0.075 3.925 20 N -0.522 5.522 21 C 0.013 3.987 22 C 0.063 3.937 23 O -0.391 6.391 24 C 0.105 3.895 25 H 0.055 0.945 26 C -0.116 4.116 27 C -0.142 4.142 28 C 0.023 3.977 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.373 0.627 37 H 0.257 0.743 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.125 0.875 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.035 0.965 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 2.446 22.994 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.034 4.034 4 H 0.087 0.913 5 C 0.326 3.674 6 O -0.452 6.452 7 N -0.366 5.366 8 C 0.003 3.997 9 C 0.149 3.851 10 O -0.386 6.386 11 C -0.656 4.656 12 H 0.049 0.951 13 C -0.210 4.210 14 N -0.558 5.558 15 Si 0.890 3.110 16 H -0.214 1.214 17 H -0.152 1.152 18 H -0.174 1.174 19 C -0.048 4.048 20 N -0.247 5.247 21 C -0.114 4.114 22 C -0.013 4.013 23 O -0.310 6.310 24 C 0.047 3.953 25 H 0.073 0.927 26 C -0.154 4.154 27 C -0.199 4.199 28 C -0.105 4.105 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.064 0.936 42 H 0.143 0.857 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.053 0.947 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.388 2.688 23.733 24.004 hybrid contribution -0.514 0.480 -1.929 2.053 sum -2.902 3.168 21.805 22.224 Atomic orbital electron populations 1.21643 0.94568 1.02174 1.01323 1.21736 0.97638 0.91604 1.04511 1.21521 0.98139 0.95510 0.88189 0.91306 1.20619 0.78876 0.83903 0.83985 1.90596 1.39631 1.28116 1.86834 1.50103 1.51353 1.30603 1.04587 1.23121 0.97640 0.99834 0.79114 1.20405 0.84471 0.88236 0.92021 1.86380 1.16933 1.40239 1.95014 1.22323 1.16152 1.20870 1.06228 0.95076 1.27354 1.00243 0.92694 1.00737 1.70937 1.34267 1.45249 1.05365 0.83906 0.75054 0.77998 0.74068 1.21383 1.15185 1.17383 1.24500 0.94351 0.90891 0.95027 1.61865 1.58183 1.02440 1.02250 1.23057 1.00492 0.99028 0.88867 1.22820 0.97320 0.82627 0.98550 1.87938 1.79772 1.26518 1.36800 1.22075 0.98720 0.91225 0.83293 0.92686 1.21533 1.00335 0.92921 1.00562 1.21648 1.00095 0.99898 0.98259 1.22868 0.96368 0.90886 1.00356 0.95936 0.90748 0.91350 0.90773 0.87631 0.91956 0.89022 0.77507 0.93366 0.87976 0.89192 0.87029 0.93563 0.85701 0.92539 0.91116 0.90520 0.92359 0.91462 0.92897 0.94694 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.20 71.98 0.66 -2.57 16 2 C -0.12 -2.58 5.02 30.59 0.15 -2.42 16 3 C 0.08 2.14 2.03 44.17 0.09 2.23 16 4 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 5 C 0.54 19.55 6.07 87.66 0.53 20.09 16 6 O -0.57 -24.48 15.10 -3.04 -0.05 -24.52 16 7 N -0.63 -23.89 3.57 -839.64 -3.00 -26.89 16 8 C 0.13 5.27 8.23 86.49 0.71 5.98 16 9 C 0.19 8.27 1.06 -10.89 -0.01 8.25 16 10 O -0.58 -25.27 13.45 -148.98 -2.00 -27.27 16 11 C -0.62 -31.81 9.05 25.60 0.23 -31.58 16 12 H 0.03 1.79 8.05 -2.91 -0.02 1.77 16 13 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 14 N -0.92 -52.84 13.70 21.45 0.29 -52.55 16 15 Si 1.07 40.80 24.81 68.60 1.70 42.50 16 16 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.23 -7.13 6.21 99.48 0.62 -6.52 16 18 H -0.25 -8.18 5.59 99.48 0.56 -7.62 16 19 C 0.07 2.69 3.86 86.43 0.33 3.02 16 20 N -0.52 -13.45 3.48 -874.35 -3.05 -16.50 16 21 C 0.01 0.23 4.71 86.32 0.41 0.64 16 22 C 0.06 1.10 7.01 72.02 0.50 1.60 16 23 O -0.39 -8.73 10.02 -148.98 -1.49 -10.22 16 24 C 0.10 2.50 2.80 30.63 0.09 2.59 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 C -0.12 -2.35 5.64 30.59 0.17 -2.18 16 27 C -0.14 -2.44 9.81 71.98 0.71 -1.73 16 28 C 0.02 0.64 4.58 86.31 0.40 1.04 16 29 H 0.02 0.65 7.49 -2.39 -0.02 0.63 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.58 6.63 -2.39 -0.02 1.56 16 32 H 0.07 1.72 6.04 -2.39 -0.01 1.70 16 33 H 0.11 1.65 6.46 -2.38 -0.02 1.63 16 34 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.09 3.75 8.09 -2.39 -0.02 3.73 16 36 H 0.37 14.83 5.46 -74.06 -0.40 14.42 16 37 H 0.26 15.07 8.72 -92.71 -0.81 14.26 16 38 H 0.10 3.54 7.88 -2.38 -0.02 3.52 16 39 H 0.09 2.80 6.77 -2.39 -0.02 2.79 16 40 H 0.11 1.62 5.44 -2.39 -0.01 1.61 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 1.04 7.83 -2.39 -0.02 1.02 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.07 2.53 5.90 -2.39 -0.01 2.51 16 Total: -1.00 -66.28 376.00 -1.91 -68.18 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: 0.25 Total: 42.36 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.44 Total: 4.91 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -5.75 Total: -95.93 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -3.54 Total: -62.02 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.70 Total: 42.50 kcal Total: -66.28 -1.91 -68.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433916055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.279 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds