Wall clock time and date at job start Tue Mar 31 2020 15:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99908 * 2 1 4 4 O 1.20824 * 119.99592 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99973 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47071 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46896 * 59.99765 * 6 5 3 8 8 N 1.46494 * 109.46995 * 180.02562 * 6 5 3 9 9 C 1.34776 * 120.00123 * 300.86787 * 8 6 5 10 10 O 1.21274 * 119.99838 * 4.62859 * 9 8 6 11 11 C 1.50699 * 119.99763 * 184.62647 * 9 8 6 12 12 H 1.08991 * 109.47706 * 320.00098 * 11 9 8 13 13 N 1.46907 * 109.47019 * 199.99857 * 11 9 8 14 14 C 1.53008 * 109.47147 * 80.00574 * 11 9 8 15 15 C 1.52995 * 109.46852 * 184.99952 * 14 11 9 16 16 C 1.53009 * 109.47099 * 179.97438 * 15 14 11 17 17 C 1.50693 * 109.47060 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00579 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99859 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99810 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00351 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47105 * 89.99500 * 21 19 17 23 23 H 1.48500 * 109.47023 * 209.99832 * 21 19 17 24 24 H 1.48505 * 109.46850 * 329.99853 * 21 19 17 25 25 C 1.53001 * 109.47089 * 300.00277 * 6 5 3 26 26 C 1.53004 * 117.49871 * 254.80722 * 25 6 5 27 27 C 1.52999 * 117.49735 * 186.14872 * 25 6 5 28 28 H 1.09000 * 109.47491 * 60.00133 * 1 2 3 29 29 H 1.09001 * 109.46647 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46814 * 299.99561 * 1 2 3 31 31 H 1.09000 * 109.46913 * 60.00835 * 5 3 2 32 32 H 1.08998 * 109.47400 * 300.00001 * 5 3 2 33 33 H 1.09004 * 109.47062 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47295 * 300.00249 * 7 6 5 35 35 H 1.08998 * 109.46660 * 60.00227 * 7 6 5 36 36 H 0.97007 * 119.99921 * 120.59814 * 8 6 5 37 37 H 1.00893 * 110.99921 * 300.00416 * 13 11 9 38 38 H 1.00901 * 110.99455 * 63.95436 * 13 11 9 39 39 H 1.09003 * 109.46279 * 304.99346 * 14 11 9 40 40 H 1.08990 * 109.47313 * 64.99520 * 14 11 9 41 41 H 1.09004 * 109.47495 * 299.99554 * 15 14 11 42 42 H 1.08999 * 109.47737 * 59.99868 * 15 14 11 43 43 H 1.09003 * 109.46392 * 299.99614 * 16 15 14 44 44 H 1.08999 * 109.46697 * 59.99521 * 16 15 14 45 45 H 0.97000 * 120.00090 * 180.02562 * 20 19 17 46 46 H 1.09002 * 115.55393 * 40.47576 * 25 6 5 47 47 H 1.08998 * 117.49763 * 0.02562 * 26 25 6 48 48 H 1.09000 * 117.49676 * 145.01703 * 26 25 6 49 49 H 1.09000 * 117.50025 * 214.97571 * 27 25 6 50 50 H 1.08994 * 117.49987 * 0.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 6 3.4535 3.4349 1.2501 8 7 5.4630 2.8188 -0.0010 9 6 6.1682 2.2553 0.9998 10 8 5.5983 1.6132 1.8563 11 6 7.6648 2.4231 1.0544 12 1 8.0761 2.3463 0.0480 13 7 8.2448 1.3726 1.9019 14 6 8.0031 3.7956 1.6402 15 6 9.5159 4.0166 1.5807 16 6 9.8542 5.3893 2.1659 17 6 11.3442 5.6067 2.1078 18 1 11.9858 4.8423 1.6953 19 6 11.8885 6.7813 2.5824 20 7 11.1071 7.7120 3.0853 21 14 13.7356 7.0507 2.5111 22 1 14.0923 7.6965 1.2225 23 1 14.1518 7.9265 3.6358 24 1 14.4310 5.7429 2.6186 25 6 3.4525 3.4366 -1.2484 26 6 4.4390 3.7407 -2.3776 27 6 3.8968 4.8775 -1.5076 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9557 0.7811 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 3.7629 4.4801 1.2509 34 1 2.3650 3.3778 1.2505 35 1 3.8436 2.9402 2.1396 36 1 5.9244 3.2718 -0.7242 37 1 7.8791 1.4227 2.8409 38 1 8.0904 0.4592 1.5020 39 1 7.4996 4.5710 1.0629 40 1 7.6699 3.8402 2.6770 41 1 10.0194 3.2411 2.1579 42 1 9.8491 3.9719 0.5439 43 1 9.3507 6.1645 1.5883 44 1 9.5208 5.4343 3.2027 45 1 11.4900 8.5385 3.4189 46 1 2.4345 3.1656 -1.5287 47 1 5.4780 3.4458 -2.2313 48 1 4.0699 3.6702 -3.4008 49 1 3.1714 5.5544 -1.9588 50 1 4.5796 5.3306 -0.7889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578800362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:08 Heat of formation + Delta-G solvation = -105.146180 kcal Electronic energy + Delta-G solvation = -28807.879490 eV Core-core repulsion = 24835.895370 eV Total energy + Delta-G solvation = -3971.984120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41961 -40.23773 -38.40423 -36.74540 -35.78341 -34.37145 -33.34903 -32.05120 -31.34563 -29.18964 -27.89591 -27.31257 -25.31708 -23.97435 -22.68488 -22.44736 -21.57371 -20.48934 -20.00817 -19.53443 -18.03593 -17.60466 -16.87356 -16.55504 -16.39437 -16.08422 -15.71879 -15.29351 -15.06576 -14.62010 -14.41691 -14.29991 -14.00716 -13.72812 -13.56062 -13.38761 -12.98858 -12.91720 -12.41881 -12.40816 -11.98158 -11.81656 -11.74137 -11.63421 -11.47668 -11.40370 -11.13558 -11.05213 -10.74798 -10.73174 -10.53209 -10.48247 -10.41714 -10.39871 -10.02911 -9.60216 -9.29373 -9.21461 -9.03352 -8.55351 -8.28896 -5.94567 -3.96166 1.88542 2.27726 2.50472 3.09504 3.35265 3.41466 3.45491 3.49887 4.15100 4.30982 4.50027 4.55936 4.59909 4.60126 4.70354 4.73575 4.80554 4.87189 4.91125 5.10647 5.15363 5.17381 5.33697 5.39785 5.41178 5.42016 5.48855 5.59587 5.73175 5.77774 5.81838 5.92675 5.94240 6.06177 6.12028 6.29947 6.39791 6.44319 6.82167 7.01290 7.08460 7.24774 7.36409 7.43319 7.50849 7.75509 7.90960 8.06695 8.07241 8.50262 9.11530 9.67521 11.16818 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.002359 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.129500 B =11865.888769 C =12469.880875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.500 6.500 5 C -0.127 4.127 6 C 0.222 3.778 7 C -0.171 4.171 8 N -0.724 5.724 9 C 0.486 3.514 10 O -0.545 6.545 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.811 5.811 14 C -0.103 4.103 15 C -0.100 4.100 16 C 0.019 3.981 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.158 4.158 26 C -0.187 4.187 27 C -0.169 4.169 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.350 0.650 38 H 0.338 0.662 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.012 0.988 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.207 -14.712 -10.956 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.388 6.388 5 C -0.165 4.165 6 C 0.135 3.865 7 C -0.228 4.228 8 N -0.380 5.380 9 C 0.272 3.728 10 O -0.423 6.423 11 C -0.038 4.038 12 H 0.117 0.883 13 N -0.339 5.339 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.018 4.018 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.176 4.176 26 C -0.224 4.224 27 C -0.206 4.206 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.243 0.757 37 H 0.165 0.835 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.144 0.856 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.107 -14.335 -10.380 27.546 hybrid contribution -0.071 0.233 -0.350 0.426 sum -21.179 -14.102 -10.730 27.614 Atomic orbital electron populations 1.23269 0.76289 1.03709 1.02595 1.86524 1.23482 1.33580 1.84096 1.23602 0.91989 0.81264 0.71959 1.90607 1.67331 1.35759 1.45122 1.21864 0.87730 0.99544 1.07352 1.19387 0.79798 0.91828 0.95471 1.22391 1.03167 1.00661 0.96623 1.46574 1.06087 1.58425 1.26900 1.22582 0.92182 0.77573 0.80439 1.90593 1.71961 1.40738 1.38963 1.21776 0.86284 0.96021 0.99758 0.88325 1.59028 1.62610 1.05904 1.06383 1.21640 1.00380 0.91347 1.00720 1.21538 0.91011 1.00666 1.00521 1.19119 0.96170 0.90541 0.95935 1.21273 0.92756 1.01586 1.39804 0.92670 1.25041 0.97856 0.96258 0.95489 1.69970 1.34769 1.07280 1.41674 0.86615 0.85917 0.78086 0.77507 1.20764 1.21321 1.19856 1.22734 1.00326 0.99201 0.95332 1.23065 0.98977 1.04067 0.96316 1.22993 1.03711 0.91079 1.02825 0.91887 0.88132 0.91782 0.87773 0.85109 0.92084 0.89544 0.91096 0.75688 0.83521 0.85033 0.91972 0.91903 0.91824 0.93720 0.96993 0.96801 0.93122 0.85629 0.88638 0.88326 0.88415 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.39 10.57 -39.26 -0.41 -3.81 16 3 C 0.47 4.83 7.26 36.00 0.26 5.09 16 4 O -0.50 -5.84 11.37 -18.75 -0.21 -6.05 16 5 C -0.13 -1.24 4.79 -27.88 -0.13 -1.37 16 6 C 0.22 2.26 0.60 -131.82 -0.08 2.18 16 7 C -0.17 -2.06 8.02 37.16 0.30 -1.76 16 8 N -0.72 -7.27 4.84 -47.61 -0.23 -7.50 16 9 C 0.49 5.93 6.47 -10.99 -0.07 5.86 16 10 O -0.54 -7.78 12.49 5.56 0.07 -7.71 16 11 C 0.08 0.99 3.15 -68.86 -0.22 0.77 16 12 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 13 N -0.81 -10.41 8.44 -5.65 -0.05 -10.45 16 14 C -0.10 -1.64 4.84 -26.73 -0.13 -1.77 16 15 C -0.10 -2.00 5.04 -26.73 -0.13 -2.13 16 16 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 17 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 21 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 25 C -0.16 -1.43 4.49 -90.62 -0.41 -1.84 16 26 C -0.19 -1.42 9.73 -26.69 -0.26 -1.68 16 27 C -0.17 -1.48 9.58 -26.69 -0.26 -1.73 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.13 1.48 5.96 -51.93 -0.31 1.18 16 33 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 34 H 0.09 1.07 5.52 -51.93 -0.29 0.79 16 35 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 36 H 0.40 3.49 5.57 -40.82 -0.23 3.26 16 37 H 0.35 4.71 8.58 -39.30 -0.34 4.37 16 38 H 0.34 3.68 9.06 -39.29 -0.36 3.32 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.13 1.25 6.01 -51.93 -0.31 0.94 16 47 H 0.10 0.66 5.88 -51.93 -0.31 0.36 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 0.95 8.00 -51.93 -0.42 0.53 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -32.63 396.12 -8.06 -40.69 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.30 Total: 8.84 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.61 Total: -10.30 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.46 Total: -44.48 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.56 Total: -17.57 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.63 -8.06 -40.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578800362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.453 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds