Wall clock time and date at job start Tue Mar 31 2020 15:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99908 * 2 1 4 4 O 1.20824 * 119.99592 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99973 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47071 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46896 * 59.99765 * 6 5 3 8 8 N 1.46494 * 109.46995 * 180.02562 * 6 5 3 9 9 C 1.34776 * 120.00123 * 300.86787 * 8 6 5 10 10 O 1.21274 * 119.99838 * 4.62859 * 9 8 6 11 11 C 1.50699 * 119.99763 * 184.62647 * 9 8 6 12 12 H 1.08991 * 109.47706 * 320.00098 * 11 9 8 13 13 N 1.46907 * 109.47019 * 199.99857 * 11 9 8 14 14 C 1.53008 * 109.47147 * 80.00574 * 11 9 8 15 15 C 1.52995 * 109.46852 * 184.99952 * 14 11 9 16 16 C 1.53009 * 109.47099 * 179.97438 * 15 14 11 17 17 C 1.50693 * 109.47060 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00579 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99859 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99810 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00351 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47105 * 89.99500 * 21 19 17 23 23 H 1.48500 * 109.47023 * 209.99832 * 21 19 17 24 24 H 1.48505 * 109.46850 * 329.99853 * 21 19 17 25 25 C 1.53001 * 109.47089 * 300.00277 * 6 5 3 26 26 C 1.53004 * 117.49871 * 254.80722 * 25 6 5 27 27 C 1.52999 * 117.49735 * 186.14872 * 25 6 5 28 28 H 1.09000 * 109.47491 * 60.00133 * 1 2 3 29 29 H 1.09001 * 109.46647 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46814 * 299.99561 * 1 2 3 31 31 H 1.09000 * 109.46913 * 60.00835 * 5 3 2 32 32 H 1.08998 * 109.47400 * 300.00001 * 5 3 2 33 33 H 1.09004 * 109.47062 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47295 * 300.00249 * 7 6 5 35 35 H 1.08998 * 109.46660 * 60.00227 * 7 6 5 36 36 H 0.97007 * 119.99921 * 120.59814 * 8 6 5 37 37 H 1.00893 * 110.99921 * 300.00416 * 13 11 9 38 38 H 1.00901 * 110.99455 * 63.95436 * 13 11 9 39 39 H 1.09003 * 109.46279 * 304.99346 * 14 11 9 40 40 H 1.08990 * 109.47313 * 64.99520 * 14 11 9 41 41 H 1.09004 * 109.47495 * 299.99554 * 15 14 11 42 42 H 1.08999 * 109.47737 * 59.99868 * 15 14 11 43 43 H 1.09003 * 109.46392 * 299.99614 * 16 15 14 44 44 H 1.08999 * 109.46697 * 59.99521 * 16 15 14 45 45 H 0.97000 * 120.00090 * 180.02562 * 20 19 17 46 46 H 1.09002 * 115.55393 * 40.47576 * 25 6 5 47 47 H 1.08998 * 117.49763 * 0.02562 * 26 25 6 48 48 H 1.09000 * 117.49676 * 145.01703 * 26 25 6 49 49 H 1.09000 * 117.50025 * 214.97571 * 27 25 6 50 50 H 1.08994 * 117.49987 * 0.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 6 3.4535 3.4349 1.2501 8 7 5.4630 2.8188 -0.0010 9 6 6.1682 2.2553 0.9998 10 8 5.5983 1.6132 1.8563 11 6 7.6648 2.4231 1.0544 12 1 8.0761 2.3463 0.0480 13 7 8.2448 1.3726 1.9019 14 6 8.0031 3.7956 1.6402 15 6 9.5159 4.0166 1.5807 16 6 9.8542 5.3893 2.1659 17 6 11.3442 5.6067 2.1078 18 1 11.9858 4.8423 1.6953 19 6 11.8885 6.7813 2.5824 20 7 11.1071 7.7120 3.0853 21 14 13.7356 7.0507 2.5111 22 1 14.0923 7.6965 1.2225 23 1 14.1518 7.9265 3.6358 24 1 14.4310 5.7429 2.6186 25 6 3.4525 3.4366 -1.2484 26 6 4.4390 3.7407 -2.3776 27 6 3.8968 4.8775 -1.5076 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9557 0.7811 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 3.7629 4.4801 1.2509 34 1 2.3650 3.3778 1.2505 35 1 3.8436 2.9402 2.1396 36 1 5.9244 3.2718 -0.7242 37 1 7.8791 1.4227 2.8409 38 1 8.0904 0.4592 1.5020 39 1 7.4996 4.5710 1.0629 40 1 7.6699 3.8402 2.6770 41 1 10.0194 3.2411 2.1579 42 1 9.8491 3.9719 0.5439 43 1 9.3507 6.1645 1.5883 44 1 9.5208 5.4343 3.2027 45 1 11.4900 8.5385 3.4189 46 1 2.4345 3.1656 -1.5287 47 1 5.4780 3.4458 -2.2313 48 1 4.0699 3.6702 -3.4008 49 1 3.1714 5.5544 -1.9588 50 1 4.5796 5.3306 -0.7889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578800362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:07 Heat of formation + Delta-G solvation = -126.686218 kcal Electronic energy + Delta-G solvation = -28808.813536 eV Core-core repulsion = 24835.895370 eV Total energy + Delta-G solvation = -3972.918166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25381 -41.11072 -39.25628 -37.50127 -37.11206 -35.32387 -35.11383 -33.15855 -32.87094 -29.98710 -29.49226 -27.98861 -26.81859 -25.02985 -24.00336 -23.22198 -22.32927 -21.82929 -21.36408 -20.39526 -18.85894 -18.51440 -18.41679 -17.60994 -17.34678 -17.21021 -16.62418 -16.48579 -16.16123 -16.05213 -15.49574 -15.34400 -15.07426 -14.64430 -14.51192 -14.31504 -14.23492 -14.13617 -13.79558 -13.54866 -13.11533 -12.98376 -12.92395 -12.77554 -12.51937 -12.43989 -12.42245 -12.32085 -12.24159 -12.10519 -11.78034 -11.55475 -11.38368 -11.26438 -11.19797 -11.15087 -11.10831 -10.83932 -10.50694 -10.18609 -9.61011 -8.15949 -6.26257 1.09709 1.41919 1.43535 1.46592 1.54789 1.60100 2.23976 2.44305 2.81124 3.17064 3.39097 3.48676 3.58852 3.80242 3.87644 3.92156 4.03087 4.07977 4.17027 4.19683 4.27537 4.31206 4.41046 4.54364 4.57499 4.61645 4.67823 4.69095 4.72113 4.78967 4.84001 4.95312 5.05277 5.12392 5.16538 5.20901 5.23316 5.29713 5.36501 5.38002 5.54074 5.62563 5.86406 5.95604 6.09155 6.31954 6.45655 6.55668 6.67076 6.91879 7.13561 7.42719 8.95748 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.002359 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.129500 B =11865.888769 C =12469.880875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.470 3.530 4 O -0.518 6.518 5 C -0.122 4.122 6 C 0.223 3.777 7 C -0.165 4.165 8 N -0.711 5.711 9 C 0.490 3.510 10 O -0.565 6.565 11 C 0.087 3.913 12 H 0.123 0.877 13 N -0.818 5.818 14 C -0.094 4.094 15 C -0.083 4.083 16 C 0.021 3.979 17 C -0.537 4.537 18 H 0.061 0.939 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.263 1.263 25 C -0.162 4.162 26 C -0.170 4.170 27 C -0.178 4.178 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.413 0.587 37 H 0.346 0.654 38 H 0.351 0.649 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.056 0.944 43 H -0.009 1.009 44 H -0.018 1.018 45 H 0.262 0.738 46 H 0.120 0.880 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.636 -15.934 -12.949 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.314 3.686 4 O -0.407 6.407 5 C -0.160 4.160 6 C 0.137 3.863 7 C -0.223 4.223 8 N -0.367 5.367 9 C 0.276 3.724 10 O -0.445 6.445 11 C -0.029 4.029 12 H 0.141 0.859 13 N -0.347 5.347 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.016 4.016 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.187 1.187 25 C -0.181 4.181 26 C -0.207 4.207 27 C -0.215 4.215 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.254 0.746 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.009 0.991 44 H 0.001 0.999 45 H 0.071 0.929 46 H 0.138 0.862 47 H 0.124 0.876 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.543 -15.578 -12.406 28.611 hybrid contribution -0.333 0.620 0.302 0.766 sum -20.876 -14.958 -12.104 28.392 Atomic orbital electron populations 1.23546 0.74669 1.05645 1.02629 1.86510 1.25124 1.32979 1.83750 1.23655 0.92154 0.81311 0.71501 1.90600 1.67745 1.36351 1.46051 1.21793 0.87619 0.99035 1.07570 1.19328 0.79568 0.92247 0.95155 1.22310 1.02815 1.00257 0.96917 1.46445 1.06071 1.57598 1.26567 1.22401 0.91907 0.77581 0.80532 1.90603 1.72195 1.41818 1.39843 1.21614 0.86846 0.93915 1.00493 0.85930 1.59023 1.62642 1.06750 1.06295 1.21440 0.97516 0.94007 1.00248 1.21278 0.93747 0.96704 1.00360 1.19057 0.94982 0.93402 0.94128 1.21732 0.94181 1.01892 1.39720 0.92121 1.26009 1.03210 0.95997 0.94983 1.70108 1.37104 1.07858 1.42570 0.85466 0.79512 0.78356 0.77835 1.19605 1.21042 1.18745 1.22581 1.00506 0.99432 0.95539 1.23176 0.99030 1.02025 0.96439 1.23018 1.03994 0.91182 1.03305 0.91460 0.85315 0.92182 0.85774 0.86519 0.92667 0.90058 0.93139 0.74584 0.84070 0.83574 0.91229 0.93688 0.92481 0.92524 0.99055 0.99921 0.92949 0.86224 0.87628 0.86841 0.87901 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.37 -6.54 10.57 -51.43 -0.54 -7.09 16 3 C 0.47 9.38 7.26 71.24 0.52 9.90 16 4 O -0.52 -11.97 11.37 21.97 0.25 -11.72 16 5 C -0.12 -2.27 4.79 29.85 0.14 -2.13 16 6 C 0.22 4.37 0.60 3.61 0.00 4.38 16 7 C -0.17 -4.06 8.02 71.98 0.58 -3.48 16 8 N -0.71 -13.22 4.84 -422.93 -2.05 -15.27 16 9 C 0.49 11.38 6.47 87.66 0.57 11.95 16 10 O -0.57 -15.92 12.49 -3.01 -0.04 -15.96 16 11 C 0.09 2.07 3.15 44.17 0.14 2.21 16 12 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 13 N -0.82 -19.93 8.44 -171.79 -1.45 -21.38 16 14 C -0.09 -2.96 4.84 30.60 0.15 -2.81 16 15 C -0.08 -3.30 5.04 30.60 0.15 -3.15 16 16 C 0.02 1.13 4.97 29.85 0.15 1.28 16 17 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 20 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 21 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 C -0.16 -2.73 4.49 -10.79 -0.05 -2.78 16 26 C -0.17 -2.15 9.73 30.62 0.30 -1.85 16 27 C -0.18 -2.89 9.58 30.62 0.29 -2.59 16 28 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 2.60 5.96 -2.39 -0.01 2.58 16 33 H 0.05 1.38 7.73 -2.38 -0.02 1.36 16 34 H 0.08 2.08 5.52 -2.39 -0.01 2.06 16 35 H 0.05 1.44 6.40 -2.39 -0.02 1.42 16 36 H 0.41 6.17 5.57 -92.70 -0.52 5.65 16 37 H 0.35 9.13 8.58 -89.70 -0.77 8.36 16 38 H 0.35 7.00 9.06 -89.69 -0.81 6.19 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.34 7.75 -2.39 -0.02 2.32 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.12 2.24 6.01 -2.39 -0.01 2.23 16 47 H 0.11 1.12 5.88 -2.39 -0.01 1.11 16 48 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.09 1.65 8.00 -2.39 -0.02 1.63 16 Total: -1.00 -71.18 396.12 2.18 -68.99 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -1.13 Total: 31.15 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.83 Total: -17.96 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -3.21 Total: -94.14 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.33 Total: -34.77 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.18 2.18 -68.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578800362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.692 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds