Wall clock time and date at job start Tue Mar 31 2020 15:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 C 1.50709 * 109.46844 * 240.00382 * 2 1 3 5 5 O 1.20823 * 120.00179 * 24.05368 * 4 2 1 6 6 O 1.34229 * 119.99289 * 204.06140 * 4 2 1 7 7 N 1.46898 * 109.46947 * 120.00257 * 2 1 3 8 8 C 1.46897 * 111.00028 * 298.41113 * 7 2 1 9 9 C 1.53237 * 109.33917 * 187.25735 * 8 7 2 10 10 N 1.47078 * 108.52342 * 306.16929 * 9 8 7 11 11 C 1.34772 * 120.88569 * 231.18939 * 10 9 8 12 12 O 1.21285 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00202 * 179.97438 * 11 10 9 14 14 C 1.52999 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47067 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47325 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47324 * 179.97438 * 16 15 14 18 18 H 1.07991 * 119.99941 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99815 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99696 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46795 * 120.00011 * 21 19 17 24 24 H 1.48498 * 109.46958 * 239.99658 * 21 19 17 25 25 C 1.47083 * 118.23485 * 51.45874 * 10 9 8 26 26 C 1.46898 * 111.00054 * 62.71811 * 7 2 1 27 27 H 1.09000 * 109.46854 * 300.00019 * 1 2 3 28 28 H 1.09004 * 109.47079 * 59.99623 * 1 2 3 29 29 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46880 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47486 * 300.00128 * 3 2 1 32 32 H 1.09000 * 109.47307 * 60.00258 * 3 2 1 33 33 H 0.96704 * 116.99414 * 179.97438 * 6 4 2 34 34 H 1.08995 * 109.49297 * 67.29963 * 8 7 2 35 35 H 1.09001 * 109.49525 * 307.21571 * 8 7 2 36 36 H 1.09000 * 109.63185 * 186.46160 * 9 8 7 37 37 H 1.08999 * 109.63143 * 65.87925 * 9 8 7 38 38 H 1.09006 * 109.47366 * 299.99979 * 13 11 10 39 39 H 1.09001 * 109.47368 * 59.99840 * 13 11 10 40 40 H 1.09006 * 109.46947 * 299.99278 * 14 13 11 41 41 H 1.08992 * 109.47325 * 59.99731 * 14 13 11 42 42 H 1.09006 * 109.47105 * 299.99502 * 15 14 13 43 43 H 1.09001 * 109.47628 * 59.99362 * 15 14 13 44 44 H 1.09007 * 109.47255 * 299.99632 * 16 15 14 45 45 H 1.09001 * 109.47589 * 59.99492 * 16 15 14 46 46 H 0.97002 * 119.99788 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.63098 * 68.25136 * 25 10 9 48 48 H 1.08999 * 109.63072 * 188.83408 * 25 10 9 49 49 H 1.08995 * 109.49075 * 292.69977 * 26 7 2 50 50 H 1.09002 * 109.49309 * 52.78613 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3328 -0.7850 -2.2129 6 8 3.2568 -1.2603 -1.2351 7 7 2.0197 -0.6925 1.1994 8 6 1.5799 -0.0049 2.4207 9 6 2.2564 -0.6474 3.6364 10 7 1.9923 -2.0939 3.6078 11 6 1.4998 -2.7288 4.6898 12 8 1.2679 -2.1065 5.7047 13 6 1.2361 -4.2117 4.6384 14 6 0.6833 -4.6784 5.9865 15 6 0.4161 -6.1840 5.9344 16 6 -0.1360 -6.6509 7.2827 17 6 -0.3998 -8.1338 7.2312 18 1 -0.1945 -8.6877 6.3272 19 6 -0.9031 -8.7833 8.3384 20 7 -1.1526 -8.1089 9.4395 21 14 -1.2294 -10.6215 8.2748 22 1 -0.8674 -11.1424 6.9322 23 1 -0.4116 -11.3054 9.3086 24 1 -2.6690 -10.8780 8.5331 25 6 2.2856 -2.8305 2.3689 26 6 1.6025 -2.1010 1.2012 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.5350 -1.7056 -2.0472 34 1 0.4979 -0.0927 2.5180 35 1 1.8563 1.0480 2.3649 36 1 1.8482 -0.2187 4.5517 37 1 3.3311 -0.4705 3.5934 38 1 0.5090 -4.4245 3.8546 39 1 2.1658 -4.7389 4.4242 40 1 1.4101 -4.4657 6.7705 41 1 -0.2464 -4.1512 6.2002 42 1 -0.3105 -6.3972 5.1504 43 1 1.3461 -6.7110 5.7209 44 1 0.5909 -6.4379 8.0666 45 1 -1.0660 -6.1241 7.4967 46 1 -1.5071 -8.5657 10.2183 47 1 3.3630 -2.8594 2.2065 48 1 1.8967 -3.8459 2.4458 49 1 0.5201 -2.1596 1.3155 50 1 1.8952 -2.5683 0.2610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609650919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:27 Heat of formation + Delta-G solvation = -131.092726 kcal Electronic energy + Delta-G solvation = -28391.032228 eV Core-core repulsion = 24417.922981 eV Total energy + Delta-G solvation = -3973.109247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43710 -40.17211 -38.63993 -36.65062 -35.79823 -34.91649 -32.73856 -32.15611 -31.73432 -29.63903 -28.02686 -27.20340 -25.95495 -24.94729 -23.59251 -22.60707 -21.43234 -20.18994 -19.94273 -18.99534 -18.44511 -17.61167 -16.74125 -16.49312 -16.16876 -15.88962 -15.83043 -15.35420 -15.20086 -14.99343 -14.56748 -14.44104 -14.11985 -13.81892 -13.48135 -13.11048 -13.03589 -12.87377 -12.67861 -12.54631 -12.33412 -12.14138 -12.08120 -11.94162 -11.79164 -11.62322 -11.50895 -11.45410 -11.39893 -10.99223 -10.86174 -10.53525 -10.47581 -10.39452 -9.76451 -9.60648 -9.21440 -9.14078 -8.96256 -8.68345 -8.30150 -5.94710 -3.97075 1.65785 2.49418 2.66807 2.77441 3.15949 3.33463 3.40645 3.44570 4.07527 4.20727 4.30948 4.48490 4.50779 4.64136 4.71254 4.73435 4.85260 4.94172 4.98265 5.01505 5.11128 5.11541 5.21417 5.26953 5.32198 5.34907 5.40446 5.41305 5.48709 5.56490 5.57708 5.70895 5.85336 5.99849 6.14089 6.21770 6.27879 6.34750 6.41588 6.55870 6.84685 7.02092 7.20209 7.29514 7.44873 7.75208 7.90953 8.06862 8.19520 8.48709 9.10891 9.66543 11.16646 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002015 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.439933 B =13892.987069 C =14575.112309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 C -0.143 4.143 4 C 0.495 3.505 5 O -0.514 6.514 6 O -0.497 6.497 7 N -0.514 5.514 8 C 0.035 3.965 9 C 0.117 3.883 10 N -0.623 5.623 11 C 0.516 3.484 12 O -0.534 6.534 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.116 3.884 26 C 0.033 3.967 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.406 0.594 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.259 0.741 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.048 0.952 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.508 20.509 -23.652 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.028 3.972 3 C -0.200 4.200 4 C 0.336 3.664 5 O -0.402 6.402 6 O -0.307 6.307 7 N -0.240 5.240 8 C -0.093 4.093 9 C -0.005 4.005 10 N -0.359 5.359 11 C 0.305 3.695 12 O -0.410 6.410 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.007 4.007 26 C -0.095 4.095 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.066 0.934 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.513 21.001 -22.830 32.446 hybrid contribution -0.896 -1.384 -0.693 1.788 sum 8.617 19.617 -23.523 31.819 Atomic orbital electron populations 1.22404 0.93220 1.03750 1.04036 1.20940 0.94292 0.95167 0.86816 1.21943 1.03010 0.91534 1.03520 1.23182 0.78994 0.75198 0.89038 1.90749 1.57408 1.56206 1.35815 1.84669 1.33764 1.67077 1.45223 1.62202 1.59211 1.01961 1.00668 1.22687 0.98610 0.99059 0.88939 1.21622 1.00604 0.80370 0.97953 1.48269 1.65583 1.08716 1.13313 1.21115 0.75573 0.90640 0.82146 1.90697 1.51295 1.68287 1.30746 1.21824 1.03029 0.90773 1.02149 1.21458 1.01231 0.97626 0.93788 1.21645 0.99890 0.92114 1.01092 1.19103 0.96136 0.95620 0.90925 1.21318 1.42362 0.93865 0.98180 0.92714 1.25051 0.95819 0.98176 0.95603 1.69986 1.45113 1.35656 1.02700 0.86556 0.77829 0.85761 0.77963 1.19788 1.21052 1.21070 1.21878 1.01023 0.95570 0.82229 1.22707 0.98619 0.88449 0.99722 0.90508 0.90359 0.91572 0.90383 0.91175 0.90233 0.73557 0.93476 0.88764 0.88425 0.90772 0.89302 0.89108 0.91776 0.91864 0.93540 0.93468 0.96568 0.96615 0.93109 0.90170 0.88707 0.93420 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 7.32 37.16 0.27 -0.88 16 2 C 0.12 0.77 0.67 -132.75 -0.09 0.68 16 3 C -0.14 -0.69 8.19 37.16 0.30 -0.38 16 4 C 0.49 3.79 5.73 36.01 0.21 4.00 16 5 O -0.51 -5.39 16.84 -18.75 -0.32 -5.70 16 6 O -0.50 -2.87 12.42 -39.25 -0.49 -3.36 16 7 N -0.51 -3.52 4.23 -219.71 -0.93 -4.45 16 8 C 0.03 0.24 4.79 -3.70 -0.02 0.22 16 9 C 0.12 1.05 6.60 -3.60 -0.02 1.03 16 10 N -0.62 -6.50 3.00 -172.18 -0.52 -7.01 16 11 C 0.52 7.20 7.71 -10.99 -0.08 7.11 16 12 O -0.53 -9.61 15.43 5.55 0.09 -9.53 16 13 C -0.14 -1.83 4.06 -27.88 -0.11 -1.95 16 14 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 15 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 21 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.12 0.90 6.53 -3.36 -0.02 0.88 16 26 C 0.03 0.24 4.81 -3.46 -0.02 0.23 16 27 H 0.08 0.44 6.60 -51.93 -0.34 0.10 16 28 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 29 H 0.07 0.49 6.63 -51.93 -0.34 0.15 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.29 6.22 -51.93 -0.32 -0.03 16 33 H 0.41 0.76 9.10 45.56 0.41 1.17 16 34 H 0.05 0.36 6.74 -51.93 -0.35 0.01 16 35 H 0.09 0.47 5.90 -51.93 -0.31 0.16 16 36 H 0.10 1.02 7.06 -51.93 -0.37 0.65 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.02 7.67 -51.93 -0.40 0.62 16 39 H 0.09 1.05 7.99 -51.93 -0.41 0.63 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.66 6.02 -51.93 -0.31 0.35 16 49 H 0.05 0.38 6.76 -51.93 -0.35 0.03 16 50 H 0.08 0.57 6.28 -51.93 -0.33 0.25 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -36.25 389.93 -8.56 -44.81 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.60 Total: -3.85 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.39 Total: -6.85 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.71 Total: -38.32 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.72 Total: -18.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.25 -8.56 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609650919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.278 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds