Wall clock time and date at job start Tue Mar 31 2020 15:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 C 1.50709 * 109.46844 * 240.00382 * 2 1 3 5 5 O 1.20823 * 120.00179 * 24.05368 * 4 2 1 6 6 O 1.34229 * 119.99289 * 204.06140 * 4 2 1 7 7 N 1.46898 * 109.46947 * 120.00257 * 2 1 3 8 8 C 1.46897 * 111.00028 * 298.41113 * 7 2 1 9 9 C 1.53237 * 109.33917 * 187.25735 * 8 7 2 10 10 N 1.47078 * 108.52342 * 306.16929 * 9 8 7 11 11 C 1.34772 * 120.88569 * 231.18939 * 10 9 8 12 12 O 1.21285 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00202 * 179.97438 * 11 10 9 14 14 C 1.52999 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47067 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47325 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47324 * 179.97438 * 16 15 14 18 18 H 1.07991 * 119.99941 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99815 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99696 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46795 * 120.00011 * 21 19 17 24 24 H 1.48498 * 109.46958 * 239.99658 * 21 19 17 25 25 C 1.47083 * 118.23485 * 51.45874 * 10 9 8 26 26 C 1.46898 * 111.00054 * 62.71811 * 7 2 1 27 27 H 1.09000 * 109.46854 * 300.00019 * 1 2 3 28 28 H 1.09004 * 109.47079 * 59.99623 * 1 2 3 29 29 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46880 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47486 * 300.00128 * 3 2 1 32 32 H 1.09000 * 109.47307 * 60.00258 * 3 2 1 33 33 H 0.96704 * 116.99414 * 179.97438 * 6 4 2 34 34 H 1.08995 * 109.49297 * 67.29963 * 8 7 2 35 35 H 1.09001 * 109.49525 * 307.21571 * 8 7 2 36 36 H 1.09000 * 109.63185 * 186.46160 * 9 8 7 37 37 H 1.08999 * 109.63143 * 65.87925 * 9 8 7 38 38 H 1.09006 * 109.47366 * 299.99979 * 13 11 10 39 39 H 1.09001 * 109.47368 * 59.99840 * 13 11 10 40 40 H 1.09006 * 109.46947 * 299.99278 * 14 13 11 41 41 H 1.08992 * 109.47325 * 59.99731 * 14 13 11 42 42 H 1.09006 * 109.47105 * 299.99502 * 15 14 13 43 43 H 1.09001 * 109.47628 * 59.99362 * 15 14 13 44 44 H 1.09007 * 109.47255 * 299.99632 * 16 15 14 45 45 H 1.09001 * 109.47589 * 59.99492 * 16 15 14 46 46 H 0.97002 * 119.99788 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.63098 * 68.25136 * 25 10 9 48 48 H 1.08999 * 109.63072 * 188.83408 * 25 10 9 49 49 H 1.08995 * 109.49075 * 292.69977 * 26 7 2 50 50 H 1.09002 * 109.49309 * 52.78613 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3328 -0.7850 -2.2129 6 8 3.2568 -1.2603 -1.2351 7 7 2.0197 -0.6925 1.1994 8 6 1.5799 -0.0049 2.4207 9 6 2.2564 -0.6474 3.6364 10 7 1.9923 -2.0939 3.6078 11 6 1.4998 -2.7288 4.6898 12 8 1.2679 -2.1065 5.7047 13 6 1.2361 -4.2117 4.6384 14 6 0.6833 -4.6784 5.9865 15 6 0.4161 -6.1840 5.9344 16 6 -0.1360 -6.6509 7.2827 17 6 -0.3998 -8.1338 7.2312 18 1 -0.1945 -8.6877 6.3272 19 6 -0.9031 -8.7833 8.3384 20 7 -1.1526 -8.1089 9.4395 21 14 -1.2294 -10.6215 8.2748 22 1 -0.8674 -11.1424 6.9322 23 1 -0.4116 -11.3054 9.3086 24 1 -2.6690 -10.8780 8.5331 25 6 2.2856 -2.8305 2.3689 26 6 1.6025 -2.1010 1.2012 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.5350 -1.7056 -2.0472 34 1 0.4979 -0.0927 2.5180 35 1 1.8563 1.0480 2.3649 36 1 1.8482 -0.2187 4.5517 37 1 3.3311 -0.4705 3.5934 38 1 0.5090 -4.4245 3.8546 39 1 2.1658 -4.7389 4.4242 40 1 1.4101 -4.4657 6.7705 41 1 -0.2464 -4.1512 6.2002 42 1 -0.3105 -6.3972 5.1504 43 1 1.3461 -6.7110 5.7209 44 1 0.5909 -6.4379 8.0666 45 1 -1.0660 -6.1241 7.4967 46 1 -1.5071 -8.5657 10.2183 47 1 3.3630 -2.8594 2.2065 48 1 1.8967 -3.8459 2.4458 49 1 0.5201 -2.1596 1.3155 50 1 1.8952 -2.5683 0.2610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609650919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:26 Heat of formation + Delta-G solvation = -156.574995 kcal Electronic energy + Delta-G solvation = -28392.137222 eV Core-core repulsion = 24417.922981 eV Total energy + Delta-G solvation = -3974.214241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02833 -41.05359 -39.40249 -37.20463 -36.74161 -36.47498 -34.64328 -32.89442 -32.52370 -31.21783 -28.48755 -28.14686 -27.24144 -25.91525 -24.34119 -23.99646 -22.39557 -21.70625 -20.73518 -19.73733 -19.12156 -18.44144 -18.26911 -17.50528 -17.21273 -16.94454 -16.72337 -16.45077 -15.96857 -15.83398 -15.69389 -15.50139 -14.84285 -14.77235 -14.53510 -14.33990 -13.89422 -13.64863 -13.59113 -13.50064 -13.43296 -13.31030 -13.05124 -12.84614 -12.80632 -12.60343 -12.48865 -12.33657 -12.28132 -12.15748 -12.11506 -12.04279 -12.01359 -11.45222 -11.37760 -11.32253 -11.11590 -10.70884 -10.55462 -9.87457 -9.37101 -8.18504 -6.30456 1.09028 1.40619 1.41517 1.54982 1.61813 1.94957 2.04055 2.42049 2.58186 3.14258 3.52241 3.60711 3.71249 3.85169 3.95605 4.04202 4.12088 4.12848 4.24819 4.27643 4.35429 4.43412 4.52503 4.57138 4.60944 4.65890 4.67216 4.73329 4.80163 4.82703 4.85510 4.87830 4.90009 4.98869 5.10640 5.19048 5.20750 5.32963 5.37562 5.48475 5.54412 5.57580 5.76625 5.78651 5.84659 5.88636 6.25766 6.36904 6.88262 7.00023 7.17252 7.39097 8.93946 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002015 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.439933 B =13892.987069 C =14575.112309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 C -0.141 4.141 4 C 0.499 3.501 5 O -0.548 6.548 6 O -0.495 6.495 7 N -0.512 5.512 8 C 0.042 3.958 9 C 0.114 3.886 10 N -0.615 5.615 11 C 0.512 3.488 12 O -0.587 6.587 13 C -0.128 4.128 14 C -0.094 4.094 15 C -0.095 4.095 16 C 0.018 3.982 17 C -0.539 4.539 18 H 0.066 0.934 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.279 1.279 24 H -0.279 1.279 25 C 0.113 3.887 26 C 0.035 3.965 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.423 0.577 34 H 0.040 0.960 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.061 0.939 44 H -0.015 1.015 45 H -0.016 1.016 46 H 0.263 0.737 47 H 0.093 0.907 48 H 0.108 0.892 49 H 0.041 0.959 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 19.843 -26.068 34.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.027 3.973 3 C -0.198 4.198 4 C 0.342 3.658 5 O -0.438 6.438 6 O -0.307 6.307 7 N -0.238 5.238 8 C -0.085 4.085 9 C -0.008 4.008 10 N -0.348 5.348 11 C 0.303 3.697 12 O -0.467 6.467 13 C -0.167 4.167 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.019 4.019 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.009 4.009 26 C -0.094 4.094 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.284 0.716 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.003 0.997 45 H 0.002 0.998 46 H 0.071 0.929 47 H 0.111 0.889 48 H 0.126 0.874 49 H 0.059 0.941 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.617 20.337 -25.312 34.161 hybrid contribution -1.174 -1.133 0.037 1.632 sum 9.443 19.204 -25.275 33.117 Atomic orbital electron populations 1.22377 0.93453 1.03078 1.04227 1.21005 0.94138 0.95993 0.86165 1.21960 1.03092 0.90369 1.04359 1.23344 0.79047 0.74626 0.88807 1.90742 1.58377 1.57578 1.37073 1.84630 1.32773 1.66788 1.46466 1.62207 1.59076 1.01825 1.00705 1.22638 0.97880 1.00051 0.87978 1.21724 1.01372 0.79503 0.98225 1.48303 1.63821 1.09522 1.13170 1.21177 0.75471 0.90823 0.82279 1.90684 1.53890 1.69237 1.32871 1.21701 1.04719 0.90696 0.99622 1.21238 0.99987 0.95706 0.96333 1.21440 1.00430 0.93759 0.97596 1.19065 0.94126 0.95091 0.93629 1.21778 1.42294 0.94920 0.98728 0.91560 1.26104 0.95419 1.03910 0.95099 1.70139 1.45992 1.38096 1.03620 0.85330 0.77750 0.78822 0.78714 1.18069 1.20478 1.20523 1.22113 1.01955 0.95938 0.80885 1.22692 0.98163 0.88781 0.99739 0.89682 0.90770 0.92686 0.90204 0.90901 0.88906 0.71592 0.94225 0.86519 0.90290 0.89656 0.86725 0.86419 0.93856 0.93987 0.92132 0.92002 0.99686 0.99768 0.92873 0.88910 0.87435 0.94126 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 7.32 71.98 0.53 -1.53 16 2 C 0.12 1.31 0.67 2.79 0.00 1.31 16 3 C -0.14 -1.03 8.19 71.98 0.59 -0.44 16 4 C 0.50 6.79 5.73 71.24 0.41 7.20 16 5 O -0.55 -10.92 16.84 21.97 0.37 -10.55 16 6 O -0.49 -4.56 12.42 -51.40 -0.64 -5.20 16 7 N -0.51 -5.84 4.23 -849.04 -3.59 -9.43 16 8 C 0.04 0.50 4.79 86.38 0.41 0.91 16 9 C 0.11 1.90 6.60 86.35 0.57 2.47 16 10 N -0.61 -11.82 3.00 -817.05 -2.45 -14.27 16 11 C 0.51 13.96 7.71 87.66 0.68 14.63 16 12 O -0.59 -21.70 15.43 -3.05 -0.05 -21.75 16 13 C -0.13 -3.17 4.06 29.85 0.12 -3.05 16 14 C -0.09 -3.42 4.50 30.59 0.14 -3.28 16 15 C -0.09 -3.86 5.15 30.59 0.16 -3.70 16 16 C 0.02 0.99 4.97 29.85 0.15 1.14 16 17 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 18 H 0.07 3.61 7.74 -2.92 -0.02 3.59 16 19 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 20 N -0.94 -59.20 13.29 21.45 0.28 -58.92 16 21 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 C 0.11 1.44 6.53 86.50 0.57 2.00 16 26 C 0.03 0.42 4.81 86.54 0.42 0.84 16 27 H 0.08 0.85 6.60 -2.39 -0.02 0.83 16 28 H 0.07 0.95 7.88 -2.38 -0.02 0.93 16 29 H 0.05 0.78 6.63 -2.39 -0.02 0.76 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.43 6.22 -2.39 -0.01 0.41 16 33 H 0.42 0.64 9.10 -74.05 -0.67 -0.03 16 34 H 0.04 0.54 6.74 -2.39 -0.02 0.53 16 35 H 0.12 0.86 5.90 -2.39 -0.01 0.84 16 36 H 0.08 1.65 7.06 -2.39 -0.02 1.63 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 2.28 7.67 -2.38 -0.02 2.27 16 39 H 0.12 2.32 7.99 -2.39 -0.02 2.30 16 40 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 41 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 42 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 45 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 46 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.11 1.11 6.02 -2.39 -0.01 1.09 16 49 H 0.04 0.57 6.76 -2.39 -0.02 0.55 16 50 H 0.09 1.01 6.28 -2.39 -0.01 1.00 16 Total: -1.00 -80.98 389.93 1.64 -79.34 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.26 Total: 6.46 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.43 Total: -12.61 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -5.76 Total: -82.62 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.32 Total: -37.50 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -80.98 1.64 -79.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609650919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.237 kcal (2) G-P(sol) polarization free energy of solvation -80.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds