Wall clock time and date at job start Tue Mar 31 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 H 1.09005 * 109.47167 * 54.99668 * 3 2 1 5 5 C 1.52993 * 109.47448 * 175.00007 * 3 2 1 6 6 O 1.42907 * 109.46787 * 295.00200 * 3 2 1 7 7 C 1.42897 * 114.00214 * 150.00102 * 6 3 2 8 8 C 1.50689 * 109.47244 * 179.97438 * 7 6 3 9 9 O 1.21287 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00096 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00073 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46978 * 180.02562 * 11 10 8 13 13 H 1.09001 * 110.26633 * 304.38107 * 12 11 10 14 14 C 1.55013 * 110.38167 * 182.25519 * 12 11 10 15 15 C 1.55482 * 101.04633 * 204.99825 * 14 12 11 16 16 C 1.53666 * 101.96795 * 33.48818 * 15 14 12 17 17 C 1.52694 * 115.26892 * 206.90015 * 16 15 14 18 18 N 1.47212 * 87.79750 * 219.25119 * 17 16 15 19 19 C 1.36929 * 135.97518 * 206.45765 * 18 17 16 20 20 H 1.08004 * 119.99690 * 7.81059 * 19 18 17 21 21 C 1.38806 * 120.00254 * 187.80786 * 19 18 17 22 22 N 1.31623 * 120.00448 * 195.31964 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 15.31965 * 21 19 18 24 24 H 1.48504 * 109.47294 * 270.00540 * 23 21 19 25 25 H 1.48492 * 109.47337 * 150.00011 * 23 21 19 26 26 H 1.48506 * 109.47040 * 29.99991 * 23 21 19 27 27 C 1.47216 * 88.05142 * 26.71314 * 18 17 16 28 28 O 1.42393 * 108.52854 * 339.13460 * 16 15 14 29 29 H 1.09007 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47571 * 299.99757 * 1 2 3 31 31 H 1.08995 * 109.47713 * 60.00202 * 1 2 3 32 32 H 1.08996 * 109.47429 * 239.99541 * 2 1 3 33 33 H 1.09003 * 109.47384 * 119.99261 * 2 1 3 34 34 H 1.08997 * 109.47592 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47065 * 299.99694 * 5 3 2 36 36 H 1.09005 * 109.47213 * 59.99690 * 5 3 2 37 37 H 1.08994 * 109.47083 * 59.99301 * 7 6 3 38 38 H 1.09005 * 109.46539 * 299.99663 * 7 6 3 39 39 H 0.97004 * 119.99924 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.47246 * 59.99657 * 11 10 8 41 41 H 1.09001 * 109.46500 * 299.99841 * 11 10 8 42 42 H 1.08996 * 111.10774 * 322.95020 * 14 12 11 43 43 H 1.09004 * 111.10206 * 87.01484 * 14 12 11 44 44 H 1.08993 * 110.93454 * 275.32536 * 15 14 12 45 45 H 1.09004 * 110.93292 * 151.65443 * 15 14 12 46 46 H 1.09002 * 113.49387 * 104.51958 * 17 16 15 47 47 H 1.09000 * 113.56007 * 333.99672 * 17 16 15 48 48 H 0.97000 * 119.99832 * 354.91549 * 22 21 19 49 49 H 1.08997 * 113.49599 * 88.02095 * 27 18 17 50 50 H 1.09000 * 113.49758 * 218.55452 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.4558 3.4903 -1.1005 8 6 1.0637 4.0572 -2.4405 9 8 0.9703 3.3267 -3.4042 10 7 0.8167 5.3760 -2.5681 11 6 0.4349 5.9271 -3.8708 12 6 0.2144 7.4356 -3.7415 13 1 -0.5229 7.6443 -2.9664 14 6 -0.2458 8.0319 -5.0963 15 6 0.2209 9.5074 -4.9462 16 6 1.5016 9.3532 -4.1111 17 6 1.8695 10.5614 -3.2529 18 7 3.2767 10.3121 -3.6059 19 6 4.4948 10.5619 -3.0324 20 1 4.5484 10.9489 -2.0255 21 6 5.6607 10.3177 -3.7451 22 7 6.8165 10.2641 -3.1178 23 14 5.5893 10.0653 -5.5946 24 1 5.4008 8.6222 -5.8903 25 1 6.8577 10.5347 -6.2076 26 1 4.4523 10.8382 -6.1561 27 6 2.8011 9.6823 -4.8486 28 8 1.4562 8.0978 -3.4408 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.9281 2.4720 0.1253 35 1 3.8531 0.9572 1.0572 36 1 3.9994 0.9054 -0.7161 37 1 2.3767 3.9644 -0.7611 38 1 0.6616 3.6807 -0.3785 39 1 0.8917 5.9603 -1.7974 40 1 -0.4858 5.4526 -4.2103 41 1 1.2293 5.7368 -4.5925 42 1 0.2573 7.5440 -5.9311 43 1 -1.3288 7.9712 -5.2042 44 1 -0.5230 10.0988 -4.4125 45 1 0.4410 9.9472 -5.9190 46 1 1.6561 10.4226 -2.1930 47 1 1.4846 11.5046 -3.6406 48 1 6.8642 10.4677 -2.1706 49 1 2.6684 10.3869 -5.6696 50 1 3.3746 8.8012 -5.1365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:13 Heat of formation + Delta-G solvation = -71.262571 kcal Electronic energy + Delta-G solvation = -28390.025327 eV Core-core repulsion = 24419.510510 eV Total energy + Delta-G solvation = -3970.514817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.33123 -39.72232 -38.35133 -36.86876 -34.54639 -34.01227 -32.35824 -32.08211 -30.30455 -29.91508 -28.10516 -26.56281 -25.41760 -24.01689 -23.57463 -21.56342 -21.29565 -21.13076 -20.48466 -19.31625 -17.51254 -17.38838 -17.28886 -16.72210 -16.20322 -15.69823 -15.66247 -14.93532 -14.67841 -14.38066 -14.11943 -14.02164 -13.79569 -13.64668 -13.52323 -13.25917 -13.18677 -13.08280 -12.92318 -12.52801 -12.25511 -12.13126 -11.90281 -11.67678 -11.63552 -11.59083 -11.33388 -11.28309 -10.82598 -10.82050 -10.71683 -10.32728 -10.18671 -9.85861 -9.84271 -9.79847 -9.23446 -9.12376 -8.83695 -8.67834 -7.14791 -6.26816 -3.17469 2.56298 2.69687 3.44501 3.48909 3.64050 3.67935 3.86383 4.44768 4.47083 4.63344 4.65598 4.68877 4.71702 4.78552 4.83874 4.89279 4.90888 4.96173 5.04200 5.04974 5.11619 5.28381 5.34456 5.36576 5.43607 5.45427 5.48977 5.55899 5.66199 5.70630 5.71626 5.85158 5.88795 5.92589 5.95181 6.05843 6.06327 6.17963 6.25566 6.32394 6.35654 6.43407 6.51934 6.89166 7.15809 7.43484 7.47241 8.17346 8.27052 9.01100 9.54946 10.40930 11.23528 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002853 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.725837 B = 9812.412733 C =11261.724688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.178 4.178 6 O -0.355 6.355 7 C 0.044 3.956 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.722 5.722 11 C 0.126 3.874 12 C 0.063 3.937 13 H 0.076 0.924 14 C -0.146 4.146 15 C -0.137 4.137 16 C 0.071 3.929 17 C 0.113 3.887 18 N -0.617 5.617 19 C -0.300 4.300 20 H 0.081 0.919 21 C -0.024 4.024 22 N -0.933 5.933 23 Si 1.062 2.938 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.283 1.283 27 C 0.097 3.903 28 O -0.332 6.332 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.406 0.594 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.260 0.740 49 H 0.055 0.945 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.274 -13.530 4.494 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.236 4.236 6 O -0.273 6.273 7 C -0.036 4.036 8 C 0.300 3.700 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.002 3.998 12 C 0.004 3.996 13 H 0.094 0.906 14 C -0.184 4.184 15 C -0.176 4.176 16 C 0.030 3.970 17 C -0.014 4.014 18 N -0.345 5.345 19 C -0.427 4.427 20 H 0.098 0.902 21 C -0.223 4.223 22 N -0.575 5.575 23 Si 0.893 3.107 24 H -0.220 1.220 25 H -0.223 1.223 26 H -0.209 1.209 27 C -0.029 4.029 28 O -0.250 6.250 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.240 0.760 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.012 -14.565 2.553 22.540 hybrid contribution -0.853 1.133 1.901 2.372 sum -17.865 -13.432 4.454 22.791 Atomic orbital electron populations 1.21744 0.95383 1.01635 1.02211 1.21622 0.96632 0.94696 1.02789 1.22240 0.94494 0.94099 0.86664 0.92059 1.22322 0.95891 1.02817 1.02563 1.88048 1.89396 1.17821 1.32031 1.22219 1.01741 0.84263 0.95413 1.20211 0.77354 0.82162 0.90316 1.90722 1.50406 1.58734 1.40092 1.45771 1.70907 1.08050 1.12820 1.21538 1.01341 0.91382 0.85515 1.23302 0.87830 0.91459 0.96981 0.90648 1.23219 1.01812 0.96097 0.97258 1.22905 0.97057 0.96369 1.01256 1.23171 0.94322 0.85579 0.93953 1.22659 0.86651 0.93832 0.98237 1.46050 1.00890 1.67976 1.19545 1.20080 0.80800 1.43784 0.98004 0.90165 1.25744 0.91079 0.99346 1.06135 1.70902 1.25328 1.49501 1.11811 0.83778 0.74725 0.76324 0.75825 1.22046 1.22281 1.20945 1.23035 0.91964 0.96433 0.91444 1.88444 1.35986 1.30811 1.69769 0.92746 0.93126 0.91776 0.90877 0.90696 0.92175 0.91537 0.91515 0.90036 0.90411 0.75967 0.90257 0.90482 0.89886 0.89888 0.90276 0.89643 0.93228 0.93688 0.92928 0.92748 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.81 37.15 0.36 -0.84 16 2 C -0.12 -0.97 5.64 -26.73 -0.15 -1.12 16 3 C 0.08 0.76 2.72 -26.73 -0.07 0.68 16 4 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 5 C -0.18 -1.56 9.53 37.15 0.35 -1.21 16 6 O -0.35 -4.42 9.06 -55.14 -0.50 -4.92 16 7 C 0.04 0.47 6.23 36.00 0.22 0.70 16 8 C 0.51 7.13 7.91 -10.99 -0.09 7.04 16 9 O -0.52 -9.45 16.50 -14.36 -0.24 -9.69 16 10 N -0.72 -8.79 5.54 -60.29 -0.33 -9.12 16 11 C 0.13 1.55 5.39 -4.04 -0.02 1.53 16 12 C 0.06 0.75 3.48 -25.67 -0.09 0.66 16 13 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.15 -1.50 6.58 -24.35 -0.16 -1.66 16 15 C -0.14 -1.66 6.39 -25.07 -0.16 -1.82 16 16 C 0.07 1.22 1.75 -90.43 -0.16 1.06 16 17 C 0.11 2.22 8.20 -8.07 -0.07 2.16 16 18 N -0.62 -15.55 3.63 -184.60 -0.67 -16.22 16 19 C -0.30 -8.87 11.03 -15.07 -0.17 -9.04 16 20 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 21 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 22 N -0.93 -30.09 13.70 55.49 0.76 -29.33 16 23 Si 1.06 27.33 25.51 -169.99 -4.34 22.99 16 24 H -0.29 -7.37 6.97 56.52 0.39 -6.97 16 25 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.28 -6.64 5.65 56.52 0.32 -6.32 16 27 C 0.10 2.08 5.09 -7.91 -0.04 2.04 16 28 O -0.33 -5.72 10.84 -35.23 -0.38 -6.10 16 29 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 38 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.41 4.23 8.47 -40.82 -0.35 3.88 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 45 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 48 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 49 H 0.06 1.10 6.79 -51.93 -0.35 0.75 16 50 H 0.06 1.33 6.28 -51.93 -0.33 1.00 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -37.43 399.19 -9.06 -46.49 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -9.06 Total: 0.53 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.33 Total: -0.65 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.24 Total: -54.67 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -1.12 Total: -20.71 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.34 Total: 22.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.43 -9.06 -46.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.773 kcal (2) G-P(sol) polarization free energy of solvation -37.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds