Wall clock time and date at job start Tue Mar 31 2020 15:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 H 1.09005 * 109.47167 * 54.99668 * 3 2 1 5 5 C 1.52993 * 109.47448 * 175.00007 * 3 2 1 6 6 O 1.42907 * 109.46787 * 295.00200 * 3 2 1 7 7 C 1.42897 * 114.00214 * 150.00102 * 6 3 2 8 8 C 1.50689 * 109.47244 * 179.97438 * 7 6 3 9 9 O 1.21287 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00096 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00073 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46978 * 180.02562 * 11 10 8 13 13 H 1.09001 * 110.26633 * 304.38107 * 12 11 10 14 14 C 1.55013 * 110.38167 * 182.25519 * 12 11 10 15 15 C 1.55482 * 101.04633 * 204.99825 * 14 12 11 16 16 C 1.53666 * 101.96795 * 33.48818 * 15 14 12 17 17 C 1.52694 * 115.26892 * 206.90015 * 16 15 14 18 18 N 1.47212 * 87.79750 * 219.25119 * 17 16 15 19 19 C 1.36929 * 135.97518 * 206.45765 * 18 17 16 20 20 H 1.08004 * 119.99690 * 7.81059 * 19 18 17 21 21 C 1.38806 * 120.00254 * 187.80786 * 19 18 17 22 22 N 1.31623 * 120.00448 * 195.31964 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 15.31965 * 21 19 18 24 24 H 1.48504 * 109.47294 * 270.00540 * 23 21 19 25 25 H 1.48492 * 109.47337 * 150.00011 * 23 21 19 26 26 H 1.48506 * 109.47040 * 29.99991 * 23 21 19 27 27 C 1.47216 * 88.05142 * 26.71314 * 18 17 16 28 28 O 1.42393 * 108.52854 * 339.13460 * 16 15 14 29 29 H 1.09007 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47571 * 299.99757 * 1 2 3 31 31 H 1.08995 * 109.47713 * 60.00202 * 1 2 3 32 32 H 1.08996 * 109.47429 * 239.99541 * 2 1 3 33 33 H 1.09003 * 109.47384 * 119.99261 * 2 1 3 34 34 H 1.08997 * 109.47592 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47065 * 299.99694 * 5 3 2 36 36 H 1.09005 * 109.47213 * 59.99690 * 5 3 2 37 37 H 1.08994 * 109.47083 * 59.99301 * 7 6 3 38 38 H 1.09005 * 109.46539 * 299.99663 * 7 6 3 39 39 H 0.97004 * 119.99924 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.47246 * 59.99657 * 11 10 8 41 41 H 1.09001 * 109.46500 * 299.99841 * 11 10 8 42 42 H 1.08996 * 111.10774 * 322.95020 * 14 12 11 43 43 H 1.09004 * 111.10206 * 87.01484 * 14 12 11 44 44 H 1.08993 * 110.93454 * 275.32536 * 15 14 12 45 45 H 1.09004 * 110.93292 * 151.65443 * 15 14 12 46 46 H 1.09002 * 113.49387 * 104.51958 * 17 16 15 47 47 H 1.09000 * 113.56007 * 333.99672 * 17 16 15 48 48 H 0.97000 * 119.99832 * 354.91549 * 22 21 19 49 49 H 1.08997 * 113.49599 * 88.02095 * 27 18 17 50 50 H 1.09000 * 113.49758 * 218.55452 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.4558 3.4903 -1.1005 8 6 1.0637 4.0572 -2.4405 9 8 0.9703 3.3267 -3.4042 10 7 0.8167 5.3760 -2.5681 11 6 0.4349 5.9271 -3.8708 12 6 0.2144 7.4356 -3.7415 13 1 -0.5229 7.6443 -2.9664 14 6 -0.2458 8.0319 -5.0963 15 6 0.2209 9.5074 -4.9462 16 6 1.5016 9.3532 -4.1111 17 6 1.8695 10.5614 -3.2529 18 7 3.2767 10.3121 -3.6059 19 6 4.4948 10.5619 -3.0324 20 1 4.5484 10.9489 -2.0255 21 6 5.6607 10.3177 -3.7451 22 7 6.8165 10.2641 -3.1178 23 14 5.5893 10.0653 -5.5946 24 1 5.4008 8.6222 -5.8903 25 1 6.8577 10.5347 -6.2076 26 1 4.4523 10.8382 -6.1561 27 6 2.8011 9.6823 -4.8486 28 8 1.4562 8.0978 -3.4408 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.9281 2.4720 0.1253 35 1 3.8531 0.9572 1.0572 36 1 3.9994 0.9054 -0.7161 37 1 2.3767 3.9644 -0.7611 38 1 0.6616 3.6807 -0.3785 39 1 0.8917 5.9603 -1.7974 40 1 -0.4858 5.4526 -4.2103 41 1 1.2293 5.7368 -4.5925 42 1 0.2573 7.5440 -5.9311 43 1 -1.3288 7.9712 -5.2042 44 1 -0.5230 10.0988 -4.4125 45 1 0.4410 9.9472 -5.9190 46 1 1.6561 10.4226 -2.1930 47 1 1.4846 11.5046 -3.6406 48 1 6.8642 10.4677 -2.1706 49 1 2.6684 10.3869 -5.6696 50 1 3.3746 8.8012 -5.1365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755054018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:12 Heat of formation + Delta-G solvation = -99.400195 kcal Electronic energy + Delta-G solvation = -28391.245466 eV Core-core repulsion = 24419.510510 eV Total energy + Delta-G solvation = -3971.734956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.58190 -40.81223 -39.23216 -38.29098 -35.72456 -34.75211 -34.48547 -33.15297 -31.36820 -30.78688 -29.46786 -27.89237 -27.05106 -25.05012 -24.47723 -22.77707 -22.55180 -21.99772 -21.51779 -20.80080 -19.55788 -18.36079 -18.19371 -17.79573 -17.27729 -17.12180 -16.66212 -16.16420 -15.82291 -15.68066 -15.47497 -15.22276 -15.11743 -14.81997 -14.76599 -14.45139 -14.29858 -14.19260 -13.73477 -13.65479 -13.39311 -13.26326 -12.98386 -12.68040 -12.60932 -12.58797 -12.38739 -12.28932 -12.23490 -11.92811 -11.82822 -11.70755 -11.49581 -11.40608 -11.30185 -10.91114 -10.85126 -10.63695 -10.25746 -10.17463 -9.24665 -8.63539 -5.45501 1.35297 1.46247 1.50433 1.61727 1.79841 2.52282 2.59201 2.98624 3.05728 3.15174 3.49553 3.61502 3.67239 3.77348 3.88959 3.92024 4.03278 4.14172 4.15526 4.17641 4.26296 4.41504 4.43181 4.47924 4.54398 4.59992 4.64479 4.67457 4.70198 4.75602 4.78068 4.83506 4.93997 4.96077 5.03733 5.05091 5.09256 5.13709 5.20298 5.23466 5.25431 5.30120 5.35462 5.42594 5.94325 6.12650 6.26991 6.47896 6.69208 7.14964 7.33624 8.28771 8.88648 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002853 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.725837 B = 9812.412733 C =11261.724688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.077 3.923 4 H 0.083 0.917 5 C -0.178 4.178 6 O -0.386 6.386 7 C 0.045 3.955 8 C 0.509 3.491 9 O -0.574 6.574 10 N -0.714 5.714 11 C 0.125 3.875 12 C 0.061 3.939 13 H 0.104 0.896 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.089 3.911 17 C 0.110 3.890 18 N -0.655 5.655 19 C -0.285 4.285 20 H 0.047 0.953 21 C -0.088 4.088 22 N -0.972 5.972 23 Si 1.101 2.899 24 H -0.290 1.290 25 H -0.301 1.301 26 H -0.245 1.245 27 C 0.085 3.915 28 O -0.367 6.367 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.415 0.585 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.246 0.754 49 H 0.077 0.923 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.911 -13.488 4.112 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.020 3.980 4 H 0.101 0.899 5 C -0.235 4.235 6 O -0.305 6.305 7 C -0.035 4.035 8 C 0.295 3.705 9 O -0.453 6.453 10 N -0.368 5.368 11 C 0.002 3.998 12 C 0.004 3.996 13 H 0.121 0.879 14 C -0.176 4.176 15 C -0.165 4.165 16 C 0.048 3.952 17 C -0.015 4.015 18 N -0.383 5.383 19 C -0.413 4.413 20 H 0.065 0.935 21 C -0.280 4.280 22 N -0.618 5.618 23 Si 0.927 3.073 24 H -0.217 1.217 25 H -0.229 1.229 26 H -0.169 1.169 27 C -0.040 4.040 28 O -0.286 6.286 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.251 0.749 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.055 0.945 49 H 0.094 0.906 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.730 -14.491 2.196 25.388 hybrid contribution 0.194 1.095 2.154 2.424 sum -20.536 -13.396 4.350 24.902 Atomic orbital electron populations 1.21716 0.95211 1.02103 1.01670 1.21661 0.96777 0.94168 1.03104 1.22469 0.94656 0.94655 0.86236 0.89921 1.22330 0.95822 1.02351 1.03021 1.88023 1.89733 1.18597 1.34146 1.22316 1.03235 0.83753 0.94146 1.20831 0.76401 0.82280 0.90954 1.90692 1.52820 1.59937 1.41894 1.45794 1.69942 1.07785 1.13251 1.21571 1.01100 0.92222 0.84940 1.23576 0.86428 0.90364 0.99205 0.87869 1.23267 1.04153 0.94417 0.95716 1.22923 0.94477 0.98010 1.01106 1.22864 0.94872 0.84688 0.92777 1.22947 0.83369 0.96431 0.98746 1.46158 1.01454 1.69050 1.21679 1.19941 0.83372 1.41201 0.96810 0.93500 1.27046 0.90831 1.00133 1.09944 1.71011 1.26820 1.52869 1.11057 0.83325 0.75739 0.76907 0.71324 1.21720 1.22862 1.16927 1.23347 0.93928 0.95715 0.90991 1.88414 1.39006 1.31127 1.70077 0.91835 0.91756 0.94114 0.92524 0.88375 0.92907 0.89360 0.93098 0.89188 0.86924 0.74867 0.88391 0.93407 0.90308 0.85998 0.87470 0.88260 0.93818 0.90781 0.94520 0.90593 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.81 71.98 0.71 -1.49 16 2 C -0.12 -1.81 5.64 30.59 0.17 -1.63 16 3 C 0.08 1.32 2.72 30.59 0.08 1.40 16 4 H 0.08 1.05 7.79 -2.38 -0.02 1.03 16 5 C -0.18 -3.00 9.53 71.98 0.69 -2.31 16 6 O -0.39 -9.56 9.06 -129.94 -1.18 -10.74 16 7 C 0.04 0.93 6.23 71.23 0.44 1.37 16 8 C 0.51 13.98 7.91 87.65 0.69 14.67 16 9 O -0.57 -21.18 16.50 15.99 0.26 -20.91 16 10 N -0.71 -16.61 5.54 -463.05 -2.56 -19.17 16 11 C 0.13 2.88 5.39 86.38 0.47 3.35 16 12 C 0.06 1.27 3.48 31.28 0.11 1.38 16 13 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 14 C -0.14 -2.17 6.58 32.14 0.21 -1.96 16 15 C -0.13 -2.39 6.39 31.67 0.20 -2.19 16 16 C 0.09 2.81 1.75 -10.67 -0.02 2.79 16 17 C 0.11 4.09 8.20 83.38 0.68 4.77 16 18 N -0.66 -32.65 3.63 -739.01 -2.68 -35.33 16 19 C -0.29 -17.31 11.03 84.03 0.93 -16.39 16 20 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 21 C -0.09 -5.50 5.50 84.86 0.47 -5.03 16 22 N -0.97 -65.35 13.70 21.65 0.30 -65.06 16 23 Si 1.10 55.74 25.51 68.60 1.75 57.49 16 24 H -0.29 -14.35 6.97 99.48 0.69 -13.66 16 25 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.25 -10.70 5.65 99.48 0.56 -10.14 16 27 C 0.09 3.48 5.09 83.48 0.43 3.90 16 28 O -0.37 -11.93 10.84 -148.98 -1.62 -13.54 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.04 0.78 7.82 -2.39 -0.02 0.76 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 1.68 7.87 -2.39 -0.02 1.67 16 38 H 0.11 1.49 8.09 -2.38 -0.02 1.47 16 39 H 0.42 7.99 8.47 -92.71 -0.79 7.21 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.35 8.05 -2.39 -0.02 1.33 16 43 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 45 H 0.10 1.68 7.81 -2.38 -0.02 1.66 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 48 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 49 H 0.08 2.78 6.79 -2.39 -0.02 2.77 16 50 H 0.03 1.54 6.28 -2.39 -0.01 1.53 16 Total: -1.00 -87.47 399.19 0.46 -87.01 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.07 Total: 17.62 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 6.26 Total: 2.64 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.95 Total: -119.56 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -2.53 Total: -45.20 kcal Atomic # 14 Polarization: 55.74 SS G_CDS: 1.75 Total: 57.49 kcal Total: -87.47 0.46 -87.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.391 kcal (2) G-P(sol) polarization free energy of solvation -87.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds