Wall clock time and date at job start Tue Mar 31 2020 15:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46778 * 2 1 4 4 H 1.08989 * 109.47508 * 305.00130 * 3 2 1 5 5 C 1.53001 * 109.47027 * 184.99904 * 3 2 1 6 6 O 1.42902 * 109.46898 * 65.00383 * 3 2 1 7 7 C 1.42900 * 113.99815 * 209.99646 * 6 3 2 8 8 C 1.50701 * 109.47028 * 179.97438 * 7 6 3 9 9 O 1.21278 * 120.00021 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99914 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00031 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47211 * 180.02562 * 11 10 8 13 13 H 1.09009 * 110.36731 * 57.81957 * 12 11 10 14 14 C 1.54554 * 110.32347 * 180.02562 * 12 11 10 15 15 C 1.54764 * 104.07718 * 142.49191 * 14 12 11 16 16 C 1.53351 * 103.67363 * 359.13808 * 15 14 12 17 17 C 1.52309 * 116.12516 * 108.91406 * 16 15 14 18 18 N 1.47283 * 87.68829 * 91.18323 * 17 16 15 19 19 C 1.36939 * 135.92487 * 206.12362 * 18 17 16 20 20 H 1.07996 * 119.99885 * 7.80043 * 19 18 17 21 21 C 1.38809 * 119.99898 * 187.79262 * 19 18 17 22 22 N 1.31617 * 120.00402 * 195.40118 * 21 19 18 23 23 Si 1.86800 * 119.99807 * 15.40559 * 21 19 18 24 24 H 1.48503 * 109.47067 * 269.99657 * 23 21 19 25 25 H 1.48498 * 109.47303 * 29.99611 * 23 21 19 26 26 H 1.48501 * 109.47329 * 149.99776 * 23 21 19 27 27 C 1.47285 * 88.14337 * 26.37639 * 18 17 16 28 28 O 1.43097 * 106.44379 * 337.45019 * 16 15 14 29 29 H 1.09000 * 109.47353 * 299.99601 * 1 2 3 30 30 H 1.08998 * 109.47271 * 60.00124 * 1 2 3 31 31 H 1.09005 * 109.46839 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47353 * 240.00399 * 2 1 3 33 33 H 1.08998 * 109.47008 * 120.00358 * 2 1 3 34 34 H 1.09002 * 109.47092 * 59.99971 * 5 3 2 35 35 H 1.08993 * 109.47445 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47021 * 300.00399 * 5 3 2 37 37 H 1.09001 * 109.46916 * 60.00374 * 7 6 3 38 38 H 1.09000 * 109.47142 * 299.99741 * 7 6 3 39 39 H 0.96998 * 119.99765 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.47025 * 59.99950 * 11 10 8 41 41 H 1.09000 * 109.47025 * 300.00213 * 11 10 8 42 42 H 1.09002 * 110.51015 * 23.84044 * 14 12 11 43 43 H 1.09004 * 110.62508 * 261.19607 * 14 12 11 44 44 H 1.08997 * 110.58448 * 240.58760 * 15 14 12 45 45 H 1.09000 * 110.71220 * 117.74392 * 15 14 12 46 46 H 1.09002 * 113.51861 * 336.47282 * 17 16 15 47 47 H 1.09007 * 113.57613 * 205.89569 * 17 16 15 48 48 H 0.97002 * 119.99818 * 354.91741 * 22 21 19 49 49 H 1.08997 * 113.51348 * 88.32384 * 27 18 17 50 50 H 1.09000 * 113.51515 * 218.91328 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 1.4558 3.4903 1.1004 8 6 1.0626 4.0570 2.4403 9 8 0.9685 3.3264 3.4037 10 7 0.8164 5.3759 2.5681 11 6 0.4346 5.9270 3.8707 12 6 0.2139 7.4354 3.7415 13 1 -0.5516 7.6442 2.9940 14 6 -0.1896 8.0378 5.1064 15 6 0.5248 9.4103 5.1381 16 6 1.2835 9.4549 3.8062 17 6 0.7462 10.4232 2.7604 18 7 1.6613 11.4357 3.3143 19 6 1.6936 12.8032 3.3772 20 1 0.8384 13.3789 3.0552 21 6 2.8253 13.4495 3.8549 22 7 2.7619 14.7175 4.2020 23 14 4.4385 12.5197 4.0049 24 1 4.5286 11.8987 5.3509 25 1 4.4976 11.4602 2.9661 26 1 5.5717 13.4608 3.8171 27 6 2.5296 10.3348 3.7654 28 8 1.4519 8.0962 3.3902 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8532 0.9571 -1.0571 35 1 3.9281 2.4720 -0.1252 36 1 3.9994 0.9054 0.7161 37 1 0.6617 3.6807 0.3785 38 1 2.3768 3.9644 0.7611 39 1 0.8920 5.9603 1.7976 40 1 1.2286 5.7361 4.5927 41 1 -0.4865 5.4531 4.2098 42 1 0.1617 7.4054 5.9218 43 1 -1.2703 8.1683 5.1641 44 1 1.2193 9.4616 5.9767 45 1 -0.2011 10.2216 5.1930 46 1 -0.3072 10.6686 2.8954 47 1 0.9846 10.1353 1.7365 48 1 1.9454 15.2202 4.0554 49 1 3.2586 10.0218 3.0180 50 1 2.9755 10.5061 4.7452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:17 Heat of formation + Delta-G solvation = -74.390295 kcal Electronic energy + Delta-G solvation = -28055.987616 eV Core-core repulsion = 24085.337171 eV Total energy + Delta-G solvation = -3970.650445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43568 -39.85188 -38.48058 -36.96033 -34.68030 -34.12684 -32.37456 -32.08637 -30.38725 -29.94611 -28.12831 -26.73693 -25.55001 -24.10649 -23.58794 -21.56049 -21.42793 -21.33912 -20.59077 -19.14901 -17.58695 -17.47799 -17.36711 -16.60538 -16.33499 -15.80453 -15.72151 -15.17871 -14.78737 -14.63918 -14.46634 -14.17644 -13.73908 -13.72302 -13.59608 -13.41799 -13.15646 -13.06861 -12.87569 -12.44826 -12.27640 -12.00985 -11.98966 -11.71632 -11.63417 -11.54243 -11.38720 -11.27439 -10.96206 -10.93930 -10.70883 -10.49511 -10.35866 -9.99119 -9.93061 -9.75610 -9.36314 -9.25763 -9.06874 -8.76229 -7.25262 -6.36221 -3.29062 2.43277 2.55955 3.40027 3.47060 3.59983 3.62677 3.85414 4.34165 4.52446 4.55494 4.56111 4.59700 4.65221 4.71694 4.77545 4.81803 4.87943 4.89891 4.94859 4.98075 5.15458 5.16950 5.24887 5.29890 5.34328 5.36968 5.45692 5.56205 5.56371 5.61356 5.74955 5.76894 5.80379 5.89763 5.97556 6.13478 6.15122 6.20383 6.23410 6.25633 6.32517 6.34306 6.51979 6.76189 7.02252 7.22216 7.30591 8.03899 8.18026 8.91232 9.44142 10.29349 11.13730 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.002216 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.419281 B =12631.390021 C =13383.029989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.178 4.178 6 O -0.355 6.355 7 C 0.044 3.956 8 C 0.513 3.487 9 O -0.523 6.523 10 N -0.723 5.723 11 C 0.130 3.870 12 C 0.063 3.937 13 H 0.075 0.925 14 C -0.145 4.145 15 C -0.113 4.113 16 C 0.061 3.939 17 C 0.106 3.894 18 N -0.615 5.615 19 C -0.305 4.305 20 H 0.083 0.917 21 C -0.021 4.021 22 N -0.928 5.928 23 Si 1.059 2.941 24 H -0.292 1.292 25 H -0.281 1.281 26 H -0.294 1.294 27 C 0.117 3.883 28 O -0.355 6.355 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.406 0.594 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.262 0.738 49 H 0.054 0.946 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 -26.470 -8.173 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.235 4.235 6 O -0.273 6.273 7 C -0.036 4.036 8 C 0.298 3.702 9 O -0.398 6.398 10 N -0.377 5.377 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.093 0.907 14 C -0.184 4.184 15 C -0.151 4.151 16 C 0.020 3.980 17 C -0.021 4.021 18 N -0.345 5.345 19 C -0.431 4.431 20 H 0.101 0.899 21 C -0.221 4.221 22 N -0.570 5.570 23 Si 0.890 3.110 24 H -0.220 1.220 25 H -0.207 1.207 26 H -0.221 1.221 27 C -0.009 4.009 28 O -0.273 6.273 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.240 0.760 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.819 -26.803 -6.871 27.932 hybrid contribution -1.573 0.565 -1.281 2.106 sum -5.392 -26.238 -8.152 28.000 Atomic orbital electron populations 1.21747 0.95305 1.01722 1.02248 1.21626 0.96716 0.94617 1.02801 1.22244 0.94422 0.94192 0.86661 0.92008 1.22317 0.95955 1.02632 1.02607 1.88054 1.89402 1.17802 1.32039 1.22221 1.01654 0.84288 0.95462 1.20224 0.77469 0.82158 0.90301 1.90730 1.50352 1.58667 1.40097 1.45800 1.70929 1.08027 1.12911 1.21490 1.01443 0.91107 0.85274 1.23212 0.88218 0.91375 0.96773 0.90720 1.22949 1.01303 0.97203 0.96916 1.22324 0.99535 0.96479 0.96765 1.23593 0.99286 0.80702 0.94412 1.22702 0.95657 0.88271 0.95448 1.45965 1.23245 1.00388 1.64896 1.20078 1.01891 0.77397 1.43718 0.89917 1.25782 1.01117 0.97247 0.97932 1.70911 1.31297 1.08759 1.46038 0.83828 0.76205 0.74527 0.76465 1.21964 1.20675 1.22103 1.22606 0.93035 0.86187 0.99052 1.88938 1.34411 1.21655 1.82298 0.91759 0.93088 0.92690 0.90671 0.90878 0.91502 0.92316 0.91536 0.90334 0.90188 0.75971 0.90469 0.90158 0.90410 0.90304 0.90359 0.89653 0.93497 0.94091 0.92793 0.92849 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.12 -0.81 5.64 -26.73 -0.15 -0.96 16 3 C 0.08 0.61 2.72 -26.73 -0.07 0.54 16 4 H 0.06 0.37 7.79 -51.93 -0.40 -0.04 16 5 C -0.18 -1.19 9.53 37.16 0.35 -0.83 16 6 O -0.35 -3.78 9.06 -55.14 -0.50 -4.28 16 7 C 0.04 0.38 6.23 36.01 0.22 0.61 16 8 C 0.51 6.07 7.91 -10.98 -0.09 5.99 16 9 O -0.52 -8.48 16.50 -14.35 -0.24 -8.72 16 10 N -0.72 -7.36 5.51 -60.30 -0.33 -7.69 16 11 C 0.13 1.41 5.28 -4.04 -0.02 1.39 16 12 C 0.06 0.72 3.35 -25.92 -0.09 0.63 16 13 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 14 C -0.15 -1.63 6.65 -24.99 -0.17 -1.80 16 15 C -0.11 -1.70 6.50 -25.62 -0.17 -1.87 16 16 C 0.06 1.05 1.39 -91.01 -0.13 0.93 16 17 C 0.11 2.05 8.18 -7.85 -0.06 1.99 16 18 N -0.61 -14.87 3.61 -184.87 -0.67 -15.54 16 19 C -0.30 -8.62 11.03 -15.06 -0.17 -8.79 16 20 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 21 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 22 N -0.93 -28.90 13.70 55.49 0.76 -28.14 16 23 Si 1.06 26.44 25.51 -169.99 -4.34 22.10 16 24 H -0.29 -6.99 6.97 56.52 0.39 -6.60 16 25 H -0.28 -6.56 5.64 56.52 0.32 -6.24 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C 0.12 2.49 5.19 -7.70 -0.04 2.45 16 28 O -0.36 -5.38 11.12 -35.23 -0.39 -5.77 16 29 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.08 0.56 7.87 -51.93 -0.41 0.16 16 39 H 0.41 3.37 8.47 -40.82 -0.35 3.02 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 45 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 46 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 47 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 48 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 49 H 0.05 1.15 6.97 -51.93 -0.36 0.79 16 50 H 0.06 1.26 6.28 -51.93 -0.33 0.94 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -34.85 399.12 -9.05 -43.90 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -9.06 Total: -0.73 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.30 Total: -1.14 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.24 Total: -51.37 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.13 Total: -18.77 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -4.34 Total: 22.10 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.85 -9.05 -43.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.495 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds